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Domain combinations for _gap_,49313,49313,_gap_,49313,49313,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

49313 - Cadherin-like
49313 - Cadherin-like
49313 - Cadherin-like
49313 - Cadherin-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Pongo_abelii_76_2   (Sumatran orangutan)   1
Microcebus_murinus_76_1   (Gray mouse lemur)   2
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   2
Ochotona_princeps_76   (American pika)   1
Tupaia_belangeri_76   (Northern tree shrew)   3
Vicugna_pacos_76_1   (Alpaca)   2
Felis_catus_76_6.2   (Domestic cat)   1
Sorex_araneus_76_1   (European shrew)   2
Erinaceus_europaeus_76   (Western European hedgehog)   4
Procavia_capensis_76_1   (Cape rock hyrax)   2
Echinops_telfairi_76   (Small Madagascar hedgehog)   2
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   1
Macropus_eugenii_76_1.0   (Tammar wallaby)   0
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   1
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   1
Latimeria_chalumnae_76_1   (Coelacanth)   1
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   0
Poecilia_formosa_76   (Amazon molly)   1
Astyanax_mexicanus_76   (Mexican tetra)   1
Crassostrea_gigas_22   (Pacific oyster)   0
Lottia_gigantea_   (Owl limpet)   0
Linepithema_humile_v1.1   (Argentine ant)   0
Anopheles_gambiae_49_3j   (African malaria mosquito)   0
Tetranychus_urticae_   (Two-spotted spider mite)   0
Caenorhabditis_brenneri_ 0
Caenorhabditis_elegans_76_235   (Roundworm)   0
Caenorhabditis_briggsae_2 0
Trichinella_spiralis_22 0
Hymenolepis_microstoma_ 0
Echinococcus_granulosus_ 1
Schistosoma_mansoni_ 0
Nematostella_vectensis_1.0   (Starlet sea anemone)   0
Proterospongia_sp._ATCC_50818_ 1
Solitalea_canadensis_DSM_3403 0
Candidatus_Solibacter_usitatus_Ellin6076 0
Acidobacterium_capsulatum_ATCC_51196 1
Methylobacterium_extorquens_AM1 0

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   1
Thalassolituus_oleivorans_MIL-1 0

Longest transcript per gene
Genome     Number
Pongo_abelii_69_2   (Sumatran orangutan)   1
Microcebus_murinus_69_1   (Gray mouse lemur)   2
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   2
Ochotona_princeps_69   (American pika)   1
Tupaia_belangeri_69   (Northern tree shrew)   3
Vicugna_pacos_69_1   (Alpaca)   2
Felis_catus_69   (Domestic cat)   2
Sorex_araneus_69_1   (European shrew)   2
Erinaceus_europaeus_69   (Western European hedgehog)   4
Procavia_capensis_69_1   (Cape rock hyrax)   2
Echinops_telfairi_69   (Small Madagascar hedgehog)   2
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   2
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   1
Macropus_eugenii_69_1.0   (Tammar wallaby)   0
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   1
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   1
Latimeria_chalumnae_69_1   (Coelacanth)   1
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   0

Others
Genome     Number
NCBI_plasmid_sequences_(Plasmids) 0
STRING_v9.0.5_(STRING) 6
NCBI_2017_08_genome 45
Uniprot_2018_03_genome 748

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