SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

  Home > SCOP hierarchy > Domain combination - _gap_,49313,_gap_

Domain combinations for _gap_,49313,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

49313 - Cadherin-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

Jump to [ Top of page · Domain combinations in individual genomes ]

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   4
Pan_troglodytes_76_2.1.4   (Chimpanzee)   0
Gorilla_gorilla_76_3.1   (Western gorilla)   0
Pongo_abelii_76_2   (Sumatran orangutan)   2
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   0
Papio_anubis_76   (Olive baboon)   0
Macaca_mulatta_76_1   (Rhesus monkey)   2
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   1
Otolemur_garnettii_76_3   (Small-eared galago)   0
Microcebus_murinus_76_1   (Gray mouse lemur)   0
Rattus_norvegicus_76_5.0   (Norway rat)   1
Mus_musculus_76_38   (House mouse)   2
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   0
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   0
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   0
Cavia_porcellus_76_3   (Domestic guinea pig)   0
Oryctolagus_cuniculus_76_2   (Rabbit)   1
Ochotona_princeps_76   (American pika)   1
Tupaia_belangeri_76   (Northern tree shrew)   1
Sus_scrofa_76_10.2   (Pig)   0
Bos_taurus_76_3.1   (Cattle)   0
Ovis_aries_76_3.1   (Sheep)   0
Vicugna_pacos_76_1   (Alpaca)   0
Tursiops_truncatus_76_1   (Bottlenose dolphin)   0
Mustela_putorius_furo_76_1.0   (Domestic ferret)   1
Ailuropoda_melanoleuca_76_1   (Giant panda)   0
Canis_familiaris_76_3.1   (Dog)   1
Felis_catus_76_6.2   (Domestic cat)   0
Equus_caballus_76_2   (Horse)   0
Myotis_lucifugus_76_2.0   (Little brown bat)   0
Pteropus_vampyrus_76_1   (Large flying fox)   0
Sorex_araneus_76_1   (European shrew)   1
Erinaceus_europaeus_76   (Western European hedgehog)   0
Procavia_capensis_76_1   (Cape rock hyrax)   0
Loxodonta_africana_76_3   (African savanna elephant)   0
Echinops_telfairi_76   (Small Madagascar hedgehog)   1
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   0
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   2
Macropus_eugenii_76_1.0   (Tammar wallaby)   0
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   1
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   1
Ornithorhynchus_anatinus_76_5   (Platypus)   1
Saccoglossus_kowalevskii_v3.0 0
Petromyzon_marinus_76_7.0   (Sea lamprey)   0
Meleagris_gallopavo_76_2   (Turkey)   2
Gallus_gallus_76_4   (Chicken)   0
Anas_platyrhynchos_76_1.0   (Mallard)   0
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   0
Ficedula_albicollis_76_1.0   (Collared flycatcher)   0
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   0
Anolis_carolinensis_76_2.0   (Green anole)   1
Xenopus_laevis_   (African clawed frog)   0
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   0
Latimeria_chalumnae_76_1   (Coelacanth)   1
Lepisosteus_oculatus_76   (Spotted gar)   2
Gadus_morhua_76_1   (Atlantic cod)   1
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   0
Takifugu_rubripes_76_4   (Torafugu)   0
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   1
Oryzias_latipes_76_1   (Japanese medaka)   2
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   1
Poecilia_formosa_76   (Amazon molly)   1
Oreochromis_niloticus_76_1.0   (Nile tilapia)   0
Astyanax_mexicanus_76   (Mexican tetra)   1
Danio_rerio_76_9   (Zebrafish)   0
Oikopleura_dioica 1
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   0
Ciona_intestinalis_76   (Vase tunicate)   0
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   0
Adineta_vaga 1
Octopus_bimaculoides_280 3
Crassostrea_gigas_22   (Pacific oyster)   4
Lottia_gigantea_   (Owl limpet)   2
Helobdella_robusta_ 5
Capitella_sp._I_ 5
Danaus_plexippus_OGS1.0   (Monarch butterfly)   0
Heliconius_melpomene_   (Postman butterfly)   1
Bombyx_mori_   (Domestic silkworm)   1
Nasonia_vitripennis_   (Jewel wasp)   0
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   0
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   1
Linepithema_humile_v1.1   (Argentine ant)   0
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   1
Solenopsis_invicta_v.2.2.3   (Red fire ant)   0
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   0
Atta_cephalotes_v1.1 1
Camponotus_floridanus_v3.3   (Florida carpenter ant)   0
Lucilia_cuprina   (Australian sheep blowfly)   0
Drosophila_grimshawi_1.3 0
Drosophila_willistoni_1.3 0
Drosophila_pseudoobscura_2.13 0
Drosophila_persimilis_1.3 0
Drosophila_suzukii 1
Drosophila_yakuba_1.3 0
Drosophila_simulans_1.3 0
Drosophila_sechellia_1.3 2
Drosophila_melanogaster_76_5   (Fruit fly)   0
Drosophila_erecta_1.3 0
Drosophila_ananassae_1.3 0
Drosophila_virilis_1.2 0
Drosophila_mojavensis_1.3 0
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   1
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   2
Anopheles_darlingi_22   (American malaria mosquito)   1
Anopheles_gambiae_49_3j   (African malaria mosquito)   2
Tribolium_castaneum_3.0   (Red flour beetle)   1
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   0
Acyrthosiphon_pisum_   (Pea aphid)   1
Rhodnius_prolixus_22 0
Daphnia_pulex_   (Common water flea)   2
Strigamia_maritima_22 0
Sarcoptes_scabiei 0
Tetranychus_urticae_   (Two-spotted spider mite)   0
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   1
Pristionchus_pacificus_ 3
Meloidogyne_incognita_   (Southern root-knot nematode)   2
Meloidogyne_hapla_ 3
Onchocerca_volvulus_22 3
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   4
Caenorhabditis_japonica_ 4
Caenorhabditis_brenneri_ 3
Caenorhabditis_remanei_ 3
Caenorhabditis_elegans_76_235   (Roundworm)   3
Caenorhabditis_briggsae_2 2
Trichinella_spiralis_22 3
Hymenolepis_microstoma_ 2
Echinococcus_multilocularis_ 1
Echinococcus_granulosus_ 1
Taenia_solium_   (Pork tapeworm)   3
Schistosoma_mansoni_ 2
Mnemiopsis_leidyi   (Sea walnut)   0
Acropora_digitifera_v1.0 1
Nematostella_vectensis_1.0   (Starlet sea anemone)   1
Hydra_vulgaris 2
Amphimedon_queenslandica 0
Trichoplax_adhaerens_ 2
Proterospongia_sp._ATCC_50818_ 1
Monosiga_brevicollis_ 1
Capsaspora_owczarzaki_ATCC_30864_ 1
Mortierella_verticillata_NRRL_6337_ 1
Malassezia_globosa_CBS_7966_ 2
Sporisorium_reilianum_22 1
Ustilago_maydis_ 1
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 1
Melampsora_laricis-populina_ 0
Rhodotorula_graminis_WP1_v1.0 0
Microbotryum_violaceum_22 0
Sphaerobolus_stellatus_v1.0 2
Coniophora_puteana 1
Hydnomerulius_pinastri_v2.0 1
Paxillus_rubicundulus_Ve08.2h10_v1.0 1
Pisolithus_microcarpus_441_v1.0 1
Pisolithus_tinctorius_Marx_270_v1.0 1
Scleroderma_citrinum_Foug_A_v1.0 1
Coprinopsis_cinerea_okayama7_130_v3 1
Pleurotus_ostreatus_   (Oyster mushroom)   1
Amanita_thiersii_Skay4041_v1.0 1
Amanita_muscaria_Koide_v1.0   (Fly agaric)   1
Galerina_marginata_v1.0 0
Hebeloma_cylindrosporum_h7_v2.0 1
Laccaria_bicolor_S238N-H82_ 1
Agaricus_bisporus_var._bisporus_ 1
Gloeophyllum_trabeumv1.0 1
Punctularia_strigosozonata_v1.0 1
Fomitiporia_mediterranea_v1.0 1
Tulasnella_calospora_AL13/4D_v1.0 3
Fomitopsis_pinicolav1.0 1
Fomitopsis_pinicola_FP-58527_SS1_v3.0 1
Phanerochaete_chrysosporium_RP-78_2.1 1
Dichomitus_squalens 1
Trametes_versicolor_v1.0 1
Tremella_mesenterica_   (Witches' butter)   0
Aspergillus_nidulans_FGSC_A4_ 0
Aspergillus_sydowii_v1.0 0
Aspergillus_versicolor_v1.0 0
Aspergillus_glaucus 0
Aspergillus_clavatus_NRRL_1_ 0
Dekkera_bruxellensis_CBS_2499_v2.0 0
Candida_tanzawaensis_NRRL_Y-17324__v1.0 0
Candida_parapsilosis_ 0
Babjeviella_inositovora_NRRL_Y-12698_v1.0 0
Pichia_stipitis_CBS_6054_ 0
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 0
Wickerhamomyces_anomalus 0
Pichia_pastoris_GS115_ 0
Yarrowia_lipolytica_CLIB122 0
Candida_lusitaniae_ATCC_42720_ 0
Vanderwaltozyma_polyspora_DSM_70294_ 0
Candida_glabrata_CBS138 0
Kluyveromyces_thermotolerans_CBS_6340 0
Lachancea_kluyveri_ 0
Kluyveromyces_waltii 0
Ashbya_gossypii_ATCC_10895_ 0
Zygosaccharomyces_rouxii_ 0
Saccharomyces_mikatae_MIT 0
Saccharomyces_paradoxus_MIT 0
Saccharomyces_cerevisiae_76   (Baker's yeast)   0
Saccharomyces_bayanus_MIT 0
Kluyveromyces_lactis 0
Allomyces_macrogynus_ATCC_38327_ 1
Dictyostelium_discoideum 0
Solanum_lycopersicum_v.2.3   (Tomato)   1
Thecamonas_trahens_ATCC_50062_ 0
Albugo_laibachii_22 0
Pythium_iwayamai_DAOM_BR242034_22 0
Pythium_ultimum_v1.7-2 0
Tetrahymena_thermophila_SB210_1_ 0
Ichthyophthirius_multifiliis_strain_G5_ 0
Symbiodinium_minutum_clade_B1_v1.2 0
Naegleria_gruberi_ 0
Trichomonas_vaginalis_ 1
Guillardia_theta_CCMP2712_v1.0_ 2
Leptolyngbya_sp._PCC_7376 0
Synechococcus_sp._PCC_7502 0
Trichodesmium_erythraeum_IMS101 0
Halothece_sp._PCC_7418 1
Rivularia_sp._PCC_7116 0
Nostoc_sp._PCC_7524 0
Eggerthella_sp._YY7918 1
Catenulispora_acidiphila_DSM_44928 1
Amycolatopsis_mediterranei_U32 0
Verrucosispora_maris_AB-18-032 1
Micromonospora_sp._L5 1
Micromonospora_aurantiaca_ATCC_27029 1
Actinoplanes_sp._SE50/110 1
Actinoplanes_missouriensis_431 0
Corynebacterium_resistens_DSM_45100 1
Tropheryma_whipplei_TW08/27 1
Microbacterium_testaceum_StLB037 1
[Cellvibrio]_gilvus_ATCC_13127 0
Arthrobacter_aurescens_TC1 0
Arthrobacter_sp._Rue61a 0
Mobiluncus_curtisii_ATCC_43063 1
Caldilinea_aerophila_DSM_14535_=_NBRC_104270 1
Herpetosiphon_aurantiacus_DSM_785 0
Deinococcus_deserti_VCD115 1
Deinococcus_geothermalis_DSM_11300 1
Deinococcus_radiodurans_R1 1
Desulfotomaculum_reducens_MI-1 1
Acetobacterium_woodii_DSM_1030 0
Eubacterium_limosum_KIST612 0
Clostridium_sticklandii_DSM_519 0
Syntrophomonas_wolfei_subsp._wolfei_str._Goettingen 1
Alkaliphilus_metalliredigens_QYMF 1
Clostridium_ljungdahlii_DSM_13528 0
Mahella_australiensis_50-1_BON 0
Caldicellulosiruptor_saccharolyticus_DSM_8903 0
Aerococcus_urinae_ACS-120-V-Col10a 1
Brevibacillus_brevis_NBRC_100599 0
Paenibacillus_sp._JDR-2 0
Paenibacillus_polymyxa_M1 1
Solibacillus_silvestris_StLB046 1
Macrococcus_caseolyticus_JCSC5402 0
Melioribacter_roseus_P3M 0
Chlorobium_luteolum_DSM_273 0
Chlorobium_chlorochromatii_CaD3 1
Haliscomenobacter_hydrossis_DSM_1100 1
Chitinophaga_pinensis_DSM_2588 1
Salinibacter_ruber_M8 1
Fibrella_aestuarina 1
Dyadobacter_fermentans_DSM_18053 1
Spirosoma_linguale_DSM_74 0
Pedobacter_saltans_DSM_12145 0
Solitalea_canadensis_DSM_3403 0
Pedobacter_heparinus_DSM_2366 0
Maribacter_sp._HTCC2170 0
Zobellia_galactanivorans 0
Flavobacterium_indicum_GPTSA100-9 1
Fibrobacter_succinogenes_subsp._succinogenes_S85 0
Isosphaera_pallida_ATCC_43644 1
Rhodopirellula_baltica_SH_1 1
Pirellula_staleyi_DSM_6068 2
Opitutus_terrae_PB90-1 1
Leptospira_interrogans_serovar_Lai_str._IPAV 2
Treponema_azotonutricium_ZAS-9 1
Denitrovibrio_acetiphilus_DSM_12809 0
Candidatus_Solibacter_usitatus_Ellin6076 1
Granulicella_tundricola_MP5ACTX9 0
Granulicella_mallensis_MP5ACTX8 0
Candidatus_Koribacter_versatilis_Ellin345 2
Terriglobus_saanensis_SP1PR4 1
Terriglobus_roseus_DSM_18391 0
Acidobacterium_capsulatum_ATCC_51196 0
Candidatus_Nitrospira_defluvii 0
Bacteriovorax_marinus_SJ 1
Bdellovibrio_bacteriovorus_HD100 1
Arcobacter_sp._L 0
Arcobacter_nitrofigilis_DSM_7299 1
Arcobacter_butzleri_RM4018 0
Syntrophus_aciditrophicus_SB 0
Desulfomonile_tiedjei_DSM_6799 0
Desulfotalea_psychrophila_LSv54 1
Desulfatibacillum_alkenivorans_AK-01 0
Desulfococcus_oleovorans_Hxd3 0
Desulfovibrio_piezophilus 0
Desulfovibrio_aespoeensis_Aspo-2 0
Geobacter_daltonii_FRC-32 0
Geobacter_uraniireducens_Rf4 0
Geobacter_bemidjiensis_Bem 1
Stigmatella_aurantiaca_DW4/3-1 1
Corallococcus_coralloides_DSM_2259 0
Myxococcus_xanthus_DK_1622 1
Myxococcus_fulvus_HW-1 1
beta_proteobacterium_CB 1
Rubrivivax_gelatinosus_IL144 1
Burkholderia_gladioli_BSR3 1
Burkholderia_glumae_BGR1 1
Alicycliphilus_denitrificans_K601 1
Delftia_sp._Cs1-4 1
Rhodoferax_ferrireducens_T118 1
Collimonas_fungivorans_Ter331 0
Bordetella_parapertussis_12822 0
Bordetella_bronchiseptica_RB50 0
Achromobacter_xylosoxidans_A8 0
Magnetococcus_marinus_MC-1 1
Caulobacter_sp._K31 0
Sphingobium_chlorophenolicum_L-1 1
Dinoroseobacter_shibae_DFL_12 0
Pseudovibrio_sp._FO-BEG1 0
Rhodobacter_sphaeroides_ATCC_17029 0
Rhodospirillum_photometricum_DSM_122 0
Tistrella_mobilis_KA081020-065 0
Magnetospirillum_magneticum_AMB-1 0
Rhodospirillum_centenum_SW 0
Azospirillum_lipoferum_4B 0
Azospirillum_brasilense_Sp245 0
Candidatus_Puniceispirillum_marinum_IMCC1322 0
Methylobacterium_extorquens_AM1 0
Genome_sequence_of_Rhizobium_sp._strain_IRBG74 0
Rhizobium_etli_CIAT_652 0
Rhizobium_leguminosarum_bv._viciae_3841 0
Agrobacterium_sp._H13-3 0
Agrobacterium_vitis_S4 0
Nitrobacter_hamburgensis_X14 0
Saccharophagus_degradans_2-40 0
Teredinibacter_turnerae_T7901 0
Cellvibrio_japonicus_Ueda107 0
Oceanimonas_sp._GK1 0
Vibrio_sp._Ex25 0
Vibrio_parahaemolyticus_RIMD_2210633 2
Vibrio_furnissii_NCTC_11218 0
Vibrio_vulnificus_MO6-24/O 0
Psychromonas_ingrahamii_37 1
Ferrimonas_balearica_DSM_9799 1
Shewanella_piezotolerans_WP3 2
Shewanella_loihica_PV-4 0
Shewanella_halifaxensis_HAW-EB4 1
Shewanella_denitrificans_OS217 0
Shewanella_pealeana_ATCC_700345 1
Shewanella_oneidensis_MR-1 1
Shewanella_baltica_OS185 0
Shewanella_woodyi_ATCC_51908 0
Shewanella_amazonensis_SB2B 0
Shewanella_violacea_DSS12 0
Shewanella_frigidimarina_NCIMB_400 0
Shewanella_putrefaciens_CN-32 0
Marinobacter_adhaerens_HP15 1
Kangiella_koreensis_DSM_16069 0
Hahella_chejuensis_KCTC_2396 1
Marinomonas_posidonica_IVIA-Po-181 0
Marinomonas_sp._MWYL1 0
Marinomonas_mediterranea_MMB-1 0
Allochromatium_vinosum_DSM_180 0
Thiocystis_violascens_DSM_198 0
Nitrosococcus_watsonii_C-113 1
gamma_proteobacterium_HdN1 0
Pectobacterium_wasabiae_WPP163 0
Pectobacterium_sp._SCC3193 0
Pectobacterium_atrosepticum_SCRI1043 0
Pectobacterium_carotovorum_subsp._carotovorum_PC1 0
Pantoea_sp._At-9b 0
Pseudomonas_protegens_Pf-5 0
Pseudomonas_sp._VLB120 0
Psychrobacter_sp._PRwf-1 0
Cenarchaeum_symbiosum_A 1
Candidatus_Nitrosopumilus_sp._AR2 1
Nitrosopumilus_maritimus_SCM1 1
Candidatus_Korarchaeum_cryptofilum_OPF8 1
Methanococcoides_burtonii_DSM_6242 1
Methanosarcina_acetivorans_C2A 0
Thermoplasmatales_archaeon_BRNA1 1
Haloquadratum_walsbyi_DSM_16790 0
Haloferax_volcanii_DS2 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   0
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   0
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   2
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   2
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   1
Saccharomyces_cerevisiae_UC5 0
Saccharomyces_cerevisiae_PW5 0
Saccharomyces_cerevisiae_CLIB324 0
Saccharomyces_cerevisiae_CBS7960 0
Saccharomyces_cerevisiae_T7 0
Saccharomyces_cerevisiae_FostersB 0
Saccharomyces_cerevisiae_FostersO 0
Saccharomyces_cerevisiae_Vin13 0
Saccharomyces_cerevisiae_LalvinQA23 0
Saccharomyces_cerevisiae_Sigma1278b 0
Saccharomyces_cerevisiae_W303 0
Saccharomyces_cerevisiae_JAY291 0
Saccharomyces_cerevisiae_AWRI1631 0
Saccharomyces_cerevisiae_YPS163 0
Saccharomyces_cerevisiae_T73 0
Saccharomyces_cerevisiae_YJM789_ 0
Saccharomyces_cerevisiae_YJM789 0
Saccharomyces_cerevisiae_RM11-1a 0
Saccharomyces_cerevisiae_RM11-1a_ 0
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   0
Dactylococcopsis_salina_PCC_8305 0
Oscillatoria_nigro-viridis_PCC_7112 0
Oscillatoria_acuminata_PCC_6304 0
Cyanothece_sp._PCC_7822 0
Calothrix_parietina_Calothrix_sp._PCC_6303 0
Frankia_sp._EuI1c 0
Amycolatopsis_mediterranei_RB 0
Amycolatopsis_mediterranei_S699 0
Amycolatopsis_mediterranei_S699 0
Mycobacterium_gilvum_Spyr1 1
Corynebacterium_callunae_DSM_20147 1
Tropheryma_whipplei_str._Twist 1
Leifsonia_xyli_subsp._cynodontis_DSM_46306 1
[Clostridium]_stercorarium_Clostridiu_subsp._stercorarium_DSM_8532 1
Desulfitobacterium_dichloroeliminans_LMG_P-21439 0
Clostridium_autoethanogenum_DSM_10061 0
Lactobacillus_reuteri_JCM_1112 1
Paenibacillus_sp._Y412MC10 0
Paenibacillus_mucilaginosus_K02 1
Paenibacillus_polymyxa_SC2 1
Bacillus_infantis_NRRL_B-14911 0
Bacillus_megaterium_WSH-002 0
Salinibacter_ruber_DSM_13855 1
Fibrobacter_succinogenes_subsp._succinogenes_S85 0
Chlamydia_trachomatis_J/6276tet1 0
Chlamydia_trachomatis_RC-J(s)/122 0
Chlamydia_trachomatis_RC-F(s)/342 0
Chlamydia_trachomatis_RC-Fs852 0
Singulisphaera_acidiphila_DSM_18658 1
Leptospira_interrogans_serovar_Lai_str._56601 2
Leptospira_interrogans_serovar_Copenhageni_str._Fiocruz_L1-130 1
Bdellovibrio_bacteriovorus_str._Tiberius 1
Arcobacter_butzleri_ED-1 0
Desulfocapsa_sulfexigens_DSM_10523 1
Geobacter_sp._M18 0
Myxococcus_stipitatus_DSM_14675 1
Burkholderia_sp._CCGE1003 1
Burkholderia_sp._KJ006 1
Candidatus_Symbiobacter_mobilis_Comamonadaceae_bacterium_CR 0
Alicycliphilus_denitrificans_BC 1
Bordetella_parapertussis_Bpp5 0
Bordetella_bronchiseptica_MO149 0
Bordetella_bronchiseptica_253 0
Rhodobacter_sphaeroides_KD131 0
Magnetospirillum_gryphiswaldense_MSR-1_v2 4
Rhizobium_etli_CFN_42 0
Rhizobium_etli_bv._mimosae_str._Mim1 0
Rhizobium_leguminosarum_bv._trifolii_WSM2304 0
Rhizobium_leguminosarum_bv._trifolii_WSM1325 0
Rhodopseudomonas_palustris_HaA2 1
Bradyrhizobium_oligotrophicum_S58 0
Bradyrhizobium_japonicum_USDA_6 0
Simiduia_agarivorans_SA1_=_DSM_21679 0
Vibrio_sp._EJY3 0
Vibrio_nigripulchritudo_VibrioScope 0
Shewanella_sp._W3-18-1 0
Shewanella_baltica_OS678 0
Shewanella_baltica_OS223 0
Shewanella_baltica_OS195 0
Shewanella_putrefaciens_200 0
Thalassolituus_oleivorans_MIL-1 1
Stenotrophomonas_maltophilia_JV3 0
Dickeya_dadantii_3937 0
Pseudomonas_denitrificans_ATCC_13867 0
Pseudomonas_protegens_CHA0 0
Pseudomonas_resinovorans_NBRC_106553 0
Pseudomonas_mendocina_NK-01 0
Candidatus_Nitrosoarchaeum_koreensis_Candidatus_Nitrosopumilus_koreensis_AR1 1
Haloquadratum_walsbyi_C23 0
Natronomonas_moolapensis_8.8.11 0

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   0
Pan_troglodytes_69_2.1.4   (Chimpanzee)   0
Gorilla_gorilla_69_3.1   (Western gorilla)   0
Pongo_abelii_69_2   (Sumatran orangutan)   2
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   0
Macaca_mulatta_69_1   (Rhesus monkey)   1
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   0
Otolemur_garnettii_69_3   (Small-eared galago)   0
Microcebus_murinus_69_1   (Gray mouse lemur)   0
Rattus_norvegicus_69_3.4   (Norway rat)   0
Mus_musculus_69_38   (House mouse)   0
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   0
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   0
Cavia_porcellus_69_3   (Domestic guinea pig)   0
Oryctolagus_cuniculus_69_2   (Rabbit)   1
Ochotona_princeps_69   (American pika)   1
Tupaia_belangeri_69   (Northern tree shrew)   1
Sus_scrofa_69_10.2   (Pig)   0
Bos_taurus_69_3.1   (Cattle)   0
Vicugna_pacos_69_1   (Alpaca)   0
Tursiops_truncatus_69_1   (Bottlenose dolphin)   0
Mustela_putorius_furo_69_1.0   (Domestic ferret)   1
Ailuropoda_melanoleuca_69_1   (Giant panda)   0
Canis_familiaris_69_3.1   (Dog)   0
Felis_catus_69   (Domestic cat)   4
Equus_caballus_69_2   (Horse)   0
Myotis_lucifugus_69_2.0   (Little brown bat)   0
Pteropus_vampyrus_69_1   (Large flying fox)   0
Sorex_araneus_69_1   (European shrew)   1
Erinaceus_europaeus_69   (Western European hedgehog)   0
Procavia_capensis_69_1   (Cape rock hyrax)   0
Loxodonta_africana_69_3   (African savanna elephant)   0
Echinops_telfairi_69   (Small Madagascar hedgehog)   1
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   1
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   2
Macropus_eugenii_69_1.0   (Tammar wallaby)   0
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   1
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   1
Ornithorhynchus_anatinus_69_5   (Platypus)   1
Petromyzon_marinus_69_7.0   (Sea lamprey)   0
Meleagris_gallopavo_69_2   (Turkey)   0
Gallus_gallus_69_2   (Chicken)   0
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   0
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   0
Anolis_carolinensis_69_2.0   (Green anole)   1
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   0
Latimeria_chalumnae_69_1   (Coelacanth)   1
Gadus_morhua_69_1   (Atlantic cod)   1
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   0
Takifugu_rubripes_69_4   (Torafugu)   0
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   1
Oryzias_latipes_69_1   (Japanese medaka)   1
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   1
Oreochromis_niloticus_69_1.0   (Nile tilapia)   0
Danio_rerio_69_9   (Zebrafish)   0
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   0
Ciona_intestinalis_69   (Vase tunicate)   0
Drosophila_melanogaster_69_5   (Fruit fly)   0
Caenorhabditis_elegans_69_215   (Roundworm)   1
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   0

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   3
Homo_sapiens__(NCBI_version)   (Human)   0
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   0
Loa_loa_v3.3_(Request)   (Eye worm)   1
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   0
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   0
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   1
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   1
NCBI_plasmid_sequences_(Plasmids) 1
STRING_v9.0.5_(STRING) 87
NCBI_2017_08_genome 1875
Uniprot_2018_03_genome 10525
TargetDB__(Targets) 3
Protozoadb_2010_08_(Protozoadb) 2

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

Please send feedback, comments or questions to superfamily@cs.bris.ac.uk or use the feedback form.

© Copyright 2013 The SUPERFAMILY authors and Julian Gough.