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Domain combinations for _gap_,49313,_gap_,49313,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

49313 - Cadherin-like
49313 - Cadherin-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Microcebus_murinus_76_1   (Gray mouse lemur)   0
Ochotona_princeps_76   (American pika)   0
Tupaia_belangeri_76   (Northern tree shrew)   2
Vicugna_pacos_76_1   (Alpaca)   1
Sorex_araneus_76_1   (European shrew)   1
Erinaceus_europaeus_76   (Western European hedgehog)   1
Procavia_capensis_76_1   (Cape rock hyrax)   0
Loxodonta_africana_76_3   (African savanna elephant)   1
Echinops_telfairi_76   (Small Madagascar hedgehog)   0
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   0
Macropus_eugenii_76_1.0   (Tammar wallaby)   3
Saccoglossus_kowalevskii_v3.0 0
Crassostrea_gigas_22   (Pacific oyster)   1
Lottia_gigantea_   (Owl limpet)   2
Helobdella_robusta_ 1
Capitella_sp._I_ 1
Danaus_plexippus_OGS1.0   (Monarch butterfly)   1
Heliconius_melpomene_   (Postman butterfly)   2
Nasonia_vitripennis_   (Jewel wasp)   0
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   0
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   0
Linepithema_humile_v1.1   (Argentine ant)   0
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   0
Solenopsis_invicta_v.2.2.3   (Red fire ant)   0
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   0
Atta_cephalotes_v1.1 0
Camponotus_floridanus_v3.3   (Florida carpenter ant)   0
Lucilia_cuprina   (Australian sheep blowfly)   2
Drosophila_grimshawi_1.3 1
Drosophila_willistoni_1.3 1
Drosophila_pseudoobscura_2.13 1
Drosophila_persimilis_1.3 1
Drosophila_suzukii 1
Drosophila_yakuba_1.3 1
Drosophila_sechellia_1.3 1
Drosophila_melanogaster_76_5   (Fruit fly)   4
Drosophila_erecta_1.3 1
Drosophila_ananassae_1.3 1
Drosophila_virilis_1.2 1
Drosophila_mojavensis_1.3 1
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   1
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   1
Anopheles_darlingi_22   (American malaria mosquito)   1
Anopheles_gambiae_49_3j   (African malaria mosquito)   2
Tribolium_castaneum_3.0   (Red flour beetle)   0
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   0
Acyrthosiphon_pisum_   (Pea aphid)   0
Rhodnius_prolixus_22 0
Daphnia_pulex_   (Common water flea)   0
Strigamia_maritima_22 1
Sarcoptes_scabiei 1
Tetranychus_urticae_   (Two-spotted spider mite)   1
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   1
Meloidogyne_hapla_ 1
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   0
Caenorhabditis_japonica_ 1
Caenorhabditis_briggsae_2 0
Hymenolepis_microstoma_ 0
Echinococcus_multilocularis_ 0
Echinococcus_granulosus_ 0
Taenia_solium_   (Pork tapeworm)   1
Schistosoma_mansoni_ 0
Acropora_digitifera_v1.0 0
Nematostella_vectensis_1.0   (Starlet sea anemone)   0
Hydra_vulgaris 0
Amphimedon_queenslandica 0
Trichoplax_adhaerens_ 0
Proterospongia_sp._ATCC_50818_ 0
Capsaspora_owczarzaki_ATCC_30864_ 1
Mortierella_verticillata_NRRL_6337_ 0
Allomyces_macrogynus_ATCC_38327_ 2
Thecamonas_trahens_ATCC_50062_ 0
Pythium_iwayamai_DAOM_BR242034_22 0
Tetrahymena_thermophila_SB210_1_ 0
Rivularia_sp._PCC_7116 0
Nostoc_sp._PCC_7524 0
Tropheryma_whipplei_TW08/27 2
[Cellvibrio]_gilvus_ATCC_13127 0
Arthrobacter_aurescens_TC1 1
Arthrobacter_sp._Rue61a 1
Clostridium_sticklandii_DSM_519 0
Clostridium_ljungdahlii_DSM_13528 0
Chitinophaga_pinensis_DSM_2588 0
Fibrella_aestuarina 0
Rhodopirellula_baltica_SH_1 0
Pirellula_staleyi_DSM_6068 0
Candidatus_Solibacter_usitatus_Ellin6076 0
Candidatus_Nitrospira_defluvii 0
Arcobacter_sp._L 0
Desulfomonile_tiedjei_DSM_6799 0
Desulfovibrio_piezophilus 0
Desulfovibrio_aespoeensis_Aspo-2 0
Delftia_sp._Cs1-4 0
Bordetella_parapertussis_12822 0
Bordetella_bronchiseptica_RB50 0
Achromobacter_xylosoxidans_A8 0
Magnetococcus_marinus_MC-1 0
Caulobacter_sp._K31 0
Rhodobacter_sphaeroides_ATCC_17029 0
Tistrella_mobilis_KA081020-065 0
Magnetospirillum_magneticum_AMB-1 1
Rhodospirillum_centenum_SW 0
Candidatus_Puniceispirillum_marinum_IMCC1322 1
Genome_sequence_of_Rhizobium_sp._strain_IRBG74 0
Rhizobium_etli_CIAT_652 0
Rhizobium_leguminosarum_bv._viciae_3841 0
Agrobacterium_sp._H13-3 0
Nitrobacter_hamburgensis_X14 0
Saccharophagus_degradans_2-40 0
Shewanella_putrefaciens_CN-32 0
Hahella_chejuensis_KCTC_2396 0
Pantoea_sp._At-9b 0
Pseudomonas_protegens_Pf-5 0
Pseudomonas_sp._VLB120 0

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Strains
Genome     Number
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   3
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   2
Dactylococcopsis_salina_PCC_8305 1
Tropheryma_whipplei_str._Twist 2
Clostridium_autoethanogenum_DSM_10061 0
Bacillus_infantis_NRRL_B-14911 1
Bacillus_megaterium_WSH-002 0
Chlamydia_trachomatis_J/6276tet1 0
Chlamydia_trachomatis_RC-J(s)/122 0
Chlamydia_trachomatis_RC-F(s)/342 0
Chlamydia_trachomatis_RC-Fs852 0
Desulfocapsa_sulfexigens_DSM_10523 0
Geobacter_sp._M18 1
Candidatus_Symbiobacter_mobilis_Comamonadaceae_bacterium_CR 0
Bordetella_parapertussis_Bpp5 0
Bordetella_bronchiseptica_MO149 0
Bordetella_bronchiseptica_253 0
Rhodobacter_sphaeroides_KD131 0
Magnetospirillum_gryphiswaldense_MSR-1_v2 0
Rhizobium_etli_CFN_42 0
Rhizobium_etli_bv._mimosae_str._Mim1 0
Rhizobium_leguminosarum_bv._trifolii_WSM2304 0
Rhizobium_leguminosarum_bv._trifolii_WSM1325 0
Bradyrhizobium_oligotrophicum_S58 0
Vibrio_sp._EJY3 0
Shewanella_sp._W3-18-1 0
Shewanella_putrefaciens_200 0
Thalassolituus_oleivorans_MIL-1 0
Dickeya_dadantii_3937 1
Pseudomonas_protegens_CHA0 0
Pseudomonas_mendocina_NK-01 0

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Longest transcript per gene
Genome     Number
Microcebus_murinus_69_1   (Gray mouse lemur)   0
Ochotona_princeps_69   (American pika)   0
Tupaia_belangeri_69   (Northern tree shrew)   2
Vicugna_pacos_69_1   (Alpaca)   1
Felis_catus_69   (Domestic cat)   0
Sorex_araneus_69_1   (European shrew)   1
Erinaceus_europaeus_69   (Western European hedgehog)   1
Procavia_capensis_69_1   (Cape rock hyrax)   0
Loxodonta_africana_69_3   (African savanna elephant)   0
Echinops_telfairi_69   (Small Madagascar hedgehog)   0
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   1
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   0
Macropus_eugenii_69_1.0   (Tammar wallaby)   3
Drosophila_melanogaster_69_5   (Fruit fly)   1

Others
Genome     Number
NCBI_plasmid_sequences_(Plasmids) 0
TargetDB__(Targets) 1
STRING_v9.0.5_(STRING) 21
NCBI_2017_08_genome 268
Uniprot_2018_03_genome 4248

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