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Domain combinations for _gap_,49562,48350,50729,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
48350 - GTPase activation domain, GAP
50729 - PH domain-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Gorilla_gorilla_76_3.1   (Western gorilla)   1
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   0
Ochotona_princeps_76   (American pika)   1
Tupaia_belangeri_76   (Northern tree shrew)   1
Sus_scrofa_76_10.2   (Pig)   1
Tursiops_truncatus_76_1   (Bottlenose dolphin)   0
Pteropus_vampyrus_76_1   (Large flying fox)   1
Meleagris_gallopavo_76_2   (Turkey)   0
Xenopus_laevis_   (African clawed frog)   2
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   0
Ciona_intestinalis_76   (Vase tunicate)   0
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   1
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   0
Anopheles_darlingi_22   (American malaria mosquito)   0
Anopheles_gambiae_49_3j   (African malaria mosquito)   0
Mnemiopsis_leidyi   (Sea walnut)   0
Acropora_digitifera_v1.0 1

Strains
Genome     Number
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   0

Longest transcript per gene
Genome     Number
Gorilla_gorilla_69_3.1   (Western gorilla)   1
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   0
Ochotona_princeps_69   (American pika)   1
Tupaia_belangeri_69   (Northern tree shrew)   1
Sus_scrofa_69_10.2   (Pig)   1
Tursiops_truncatus_69_1   (Bottlenose dolphin)   0
Pteropus_vampyrus_69_1   (Large flying fox)   1
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   0
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   0
Ciona_intestinalis_69   (Vase tunicate)   0

Others
Genome     Number
STRING_v9.0.5_(STRING) 1
NCBI_2017_08_genome 26
Uniprot_2018_03_genome 196

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