SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

  Home > SCOP hierarchy > Domain combination - _gap_,49599,54695,_gap_

Domain combinations for _gap_,49599,54695,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

49599 - TRAF domain-like
54695 - POZ domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

Jump to [ Top of page · Domain combinations in individual genomes ]

Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Ovis_aries_76_3.1   (Sheep)   1
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   1
Oikopleura_dioica 1
Adineta_vaga 5
Crassostrea_gigas_22   (Pacific oyster)   0
Capitella_sp._I_ 0
Heliconius_melpomene_   (Postman butterfly)   1
Nasonia_vitripennis_   (Jewel wasp)   5
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   1
Drosophila_grimshawi_1.3 1
Drosophila_willistoni_1.3 1
Drosophila_pseudoobscura_2.13 2
Drosophila_persimilis_1.3 1
Drosophila_yakuba_1.3 1
Drosophila_simulans_1.3 1
Drosophila_sechellia_1.3 1
Drosophila_melanogaster_76_5   (Fruit fly)   4
Drosophila_erecta_1.3 1
Drosophila_ananassae_1.3 1
Drosophila_virilis_1.2 1
Drosophila_mojavensis_1.3 1
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   1
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   4
Anopheles_gambiae_49_3j   (African malaria mosquito)   1
Tribolium_castaneum_3.0   (Red flour beetle)   1
Acyrthosiphon_pisum_   (Pea aphid)   1
Pristionchus_pacificus_ 4
Meloidogyne_incognita_   (Southern root-knot nematode)   4
Meloidogyne_hapla_ 2
Onchocerca_volvulus_22 4
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   3
Caenorhabditis_japonica_ 2
Caenorhabditis_brenneri_ 5
Caenorhabditis_remanei_ 28
Caenorhabditis_elegans_76_235   (Roundworm)   3
Caenorhabditis_briggsae_2 5
Trichinella_spiralis_22 1
Schistosoma_mansoni_ 1
Mixia_osmundae_IAM_14324_v1.0 1
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 1
Microbotryum_violaceum_22 1
Pinus_taeda   (Loblolly pine)   1
Theobroma_cacao_B97-61/B2_v1   (Cacao)   1
Glycine_max_v109   (Soybean)   3
Actinidia_chinensis_Hongyang_ 1
Triticum_urartu_22 4
Triticum_aestivum_22   (Bread wheat)   2
Aegilops_tauschii_22 22
Brachypodium_distachyon_   (Stiff brome)   3
Oryza_barthii_22   (African wild rice)   2
Oryza_meridionalis_22 4
Oryza_glumaepatula_22 0
Oryza_glaberrima   (African rice)   1
Oryza_punctata_22 3
Oryza_nivara_22 3
Oryza_brachyantha_22   (Malo sina)   2
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   1
Oryza_sativa_v193   (Rice)   1
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   2
Panicum_virgatum_v202   (Switchgrass)   5
Setaria_italica_v164   (Foxtail millet)   5
Zea_mays_subsp._mays_   (Maize)   1
Zea_mays_v181   (Maize)   1
Sorghum_bicolor_   (Sorghum)   4
Fragilariopsis_cylindrus 1
Neospora_caninum 1
Symbiodinium_minutum_clade_B1_v1.2 2
Guillardia_theta_CCMP2712_v1.0_ 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   4
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   2
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   3
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   3
Hordeum_vulgare_22   (Domesticated barley)   2
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   7
Neospora_caninum_Nc-Liverpool_6.2 1

Longest transcript per gene
Genome     Number
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   1
Drosophila_melanogaster_69_5   (Fruit fly)   1
Caenorhabditis_elegans_69_215   (Roundworm)   2

Others
Genome     Number
Loa_loa_v3.3_(Request)   (Eye worm)   3
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   3
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   2
Lotus_japonicus__(Early_assembly) 1
Nicotiana_benthamiana_0.4.4_(Early_draft) 1
TargetDB__(Targets) 2
STRING_v9.0.5_(STRING) 76
NCBI_2017_08_genome 426
Uniprot_2018_03_genome 6228

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

Please send feedback, comments or questions to superfamily@cs.bris.ac.uk or use the feedback form.

© Copyright 2013 The SUPERFAMILY authors and Julian Gough.