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  Home > SCOP hierarchy > Domain combination - _gap_,49695

Domain combinations for _gap_,49695 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

49695 - gamma-Crystallin-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   3
Pan_troglodytes_76_2.1.4   (Chimpanzee)   2
Gorilla_gorilla_76_3.1   (Western gorilla)   4
Pongo_abelii_76_2   (Sumatran orangutan)   3
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   1
Papio_anubis_76   (Olive baboon)   1
Macaca_mulatta_76_1   (Rhesus monkey)   1
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   3
Otolemur_garnettii_76_3   (Small-eared galago)   1
Microcebus_murinus_76_1   (Gray mouse lemur)   2
Rattus_norvegicus_76_5.0   (Norway rat)   1
Mus_musculus_76_38   (House mouse)   1
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   2
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   2
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   3
Cavia_porcellus_76_3   (Domestic guinea pig)   2
Oryctolagus_cuniculus_76_2   (Rabbit)   0
Ochotona_princeps_76   (American pika)   2
Tupaia_belangeri_76   (Northern tree shrew)   1
Sus_scrofa_76_10.2   (Pig)   2
Bos_taurus_76_3.1   (Cattle)   1
Ovis_aries_76_3.1   (Sheep)   1
Vicugna_pacos_76_1   (Alpaca)   0
Tursiops_truncatus_76_1   (Bottlenose dolphin)   1
Mustela_putorius_furo_76_1.0   (Domestic ferret)   0
Ailuropoda_melanoleuca_76_1   (Giant panda)   2
Canis_familiaris_76_3.1   (Dog)   2
Felis_catus_76_6.2   (Domestic cat)   2
Equus_caballus_76_2   (Horse)   1
Myotis_lucifugus_76_2.0   (Little brown bat)   3
Pteropus_vampyrus_76_1   (Large flying fox)   2
Sorex_araneus_76_1   (European shrew)   0
Erinaceus_europaeus_76   (Western European hedgehog)   0
Procavia_capensis_76_1   (Cape rock hyrax)   2
Loxodonta_africana_76_3   (African savanna elephant)   1
Echinops_telfairi_76   (Small Madagascar hedgehog)   2
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   1
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   1
Macropus_eugenii_76_1.0   (Tammar wallaby)   1
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   1
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   2
Ornithorhynchus_anatinus_76_5   (Platypus)   2
Petromyzon_marinus_76_7.0   (Sea lamprey)   0
Meleagris_gallopavo_76_2   (Turkey)   2
Gallus_gallus_76_4   (Chicken)   1
Anas_platyrhynchos_76_1.0   (Mallard)   2
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   0
Ficedula_albicollis_76_1.0   (Collared flycatcher)   1
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   2
Anolis_carolinensis_76_2.0   (Green anole)   1
Xenopus_laevis_   (African clawed frog)   0
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   0
Latimeria_chalumnae_76_1   (Coelacanth)   1
Lepisosteus_oculatus_76   (Spotted gar)   2
Gadus_morhua_76_1   (Atlantic cod)   3
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   0
Takifugu_rubripes_76_4   (Torafugu)   6
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   5
Oryzias_latipes_76_1   (Japanese medaka)   1
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   2
Poecilia_formosa_76   (Amazon molly)   0
Oreochromis_niloticus_76_1.0   (Nile tilapia)   3
Astyanax_mexicanus_76   (Mexican tetra)   2
Danio_rerio_76_9   (Zebrafish)   5
Capitella_sp._I_ 0
Daphnia_pulex_   (Common water flea)   0
Pristionchus_pacificus_ 0
Schistosoma_mansoni_ 0
Mnemiopsis_leidyi   (Sea walnut)   1
Acropora_digitifera_v1.0 2
Nematostella_vectensis_1.0   (Starlet sea anemone)   1
Mortierella_verticillata_NRRL_6337_ 1
Heterobasidion_annosum_ 1
Magnaporthe_grisea_70-15_ 0
Podospora_anserina_ 1
Chaetomium_globosum_CBS_148.51_ 1
Fusarium_graminearum_ 0
Paracoccidioides_brasiliensis_Pb18_ 1
Pinus_taeda   (Loblolly pine)   1
Ostreococcus_lucimarinus_CCE9901_ 0
Cyanophora_paradoxa_ 0
Paramecium_tetraurelia_ 25
Tetrahymena_thermophila_SB210_1_ 10
Ichthyophthirius_multifiliis_strain_G5_ 3
Microcystis_aeruginosa_NIES-843 1
Nostoc_sp._PCC_7524 0
Streptomyces_flavogriseus_ATCC_33331 2
Streptomyces_bingchenggensis_BCW-1 0
Streptomyces_scabiei_87.22 0
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 1
Kribbella_flavida_DSM_17836 2
Arthrobacter_chlorophenolicus_A6 1
Caldilinea_aerophila_DSM_14535_=_NBRC_104270 0
Dehalococcoides_ethenogenes_195 1
Dehalogenimonas_lykanthroporepellens_BL-DC-9 2
Anaerolinea_thermophila_UNI-1 0
Roseiflexus_castenholzii_DSM_13941 1
Clostridium_beijerinckii_NCIMB_8052 0
Chlorobium_chlorochromatii_CaD3 0
Niastella_koreensis_GR20-10 0
Chitinophaga_pinensis_DSM_2588 0
Bacteroides_fragilis_YCH46 1
Zobellia_galactanivorans 1
Flavobacterium_johnsoniae_UW101 0
Dictyoglomus_thermophilum_H-6-12 0
Granulicella_mallensis_MP5ACTX8 1
Desulfococcus_oleovorans_Hxd3 0
Haliangium_ochraceum_DSM_14365 1
Stigmatella_aurantiaca_DW4/3-1 1
Corallococcus_coralloides_DSM_2259 1
Myxococcus_fulvus_HW-1 0
Azoarcus_sp._KH32C 0
Rhodoferax_ferrireducens_T118 0
Nitrosospira_multiformis_ATCC_25196 1
Brevundimonas_subvibrioides_ATCC_15264 1
Caulobacter_crescentus_NA1000 2
Caulobacter_segnis_ATCC_21756 1
Maricaulis_maris_MCS10 0
Hyphomonas_neptunium_ATCC_15444 0
Rhodospirillum_centenum_SW 0
Cellvibrio_japonicus_Ueda107 0
Aeromonas_hydrophila_subsp._hydrophila_ATCC_7966 1
Vibrio_fischeri_MJ11 1
Vibrio_cholerae_O395 0
Photobacterium_profundum_SS9 0
Psychromonas_ingrahamii_37 0
Marinomonas_posidonica_IVIA-Po-181 0
Edwardsiella_ictaluri_93-146 1
Edwardsiella_tarda_EIB202 1
Rahnella_sp._Y9602 0
Yersinia_pestis_Pestoides_F 0
Methanosaeta_thermophila_PT 1

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   0
Paracoccidioides_brasiliensis_Pb01_ 1
Dactylococcopsis_salina_PCC_8305 0
Streptomyces_davawensis_JCM_4913 0
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 1
Amycolatopsis_orientalis_HCCB10007 1
Dehalococcoides_mccartyi_GY50 1
Dehalococcoides_sp._VS 1
Bacillus_thuringiensis_MC28 1
Myxococcus_stipitatus_DSM_14675 0
Variovorax_paradoxus_B4 1
Variovorax_paradoxus_EPS 1
Caulobacter_crescentus_CB15 2
Aeromonas_hydrophila_ML09-119 1
Vibrio_fischeri_ES114 1
Vibrio_cholerae_M66-2 0
Vibrio_cholerae_O395 0
Vibrio_cholerae_IEC224 0
Vibrio_cholerae_O1_str._2010EL-1786 0
Vibrio_cholerae_MJ-1236 0
Morganella_morganii_subsp._morganii_KT 1
Edwardsiella_tarda_C07-087 1
Edwardsiella_tarda_FL6-60 1
Rahnella_aquatilis_HX2 0
Yersinia_pseudotuberculosis_PB1/+ 0
Yersinia_pseudotuberculosis_YPIII 0
Yersinia_pseudotuberculosis_IP_32953 0
Yersinia_pestis_biovar_Microtus_str._91001 0
Yersinia_pestis_A1122 0
Yersinia_pestis_Z176003 0
Yersinia_pestis_D182038 0
Yersinia_pestis_D106004 0
Yersinia_pestis_biovar_Medievalis_str._Harbin_35 0
Yersinia_pestis_Nepal516 0
Yersinia_pestis_Antiqua 0
Yersinia_pestis_Angola 0
Yersinia_pestis_CO92 0
Yersinia_pestis_KIM10+ 0

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   1
Pan_troglodytes_69_2.1.4   (Chimpanzee)   2
Gorilla_gorilla_69_3.1   (Western gorilla)   2
Pongo_abelii_69_2   (Sumatran orangutan)   3
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   1
Macaca_mulatta_69_1   (Rhesus monkey)   0
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   2
Otolemur_garnettii_69_3   (Small-eared galago)   1
Microcebus_murinus_69_1   (Gray mouse lemur)   2
Rattus_norvegicus_69_3.4   (Norway rat)   1
Mus_musculus_69_38   (House mouse)   1
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   2
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   2
Cavia_porcellus_69_3   (Domestic guinea pig)   1
Oryctolagus_cuniculus_69_2   (Rabbit)   0
Ochotona_princeps_69   (American pika)   2
Tupaia_belangeri_69   (Northern tree shrew)   1
Sus_scrofa_69_10.2   (Pig)   1
Bos_taurus_69_3.1   (Cattle)   1
Vicugna_pacos_69_1   (Alpaca)   0
Tursiops_truncatus_69_1   (Bottlenose dolphin)   1
Mustela_putorius_furo_69_1.0   (Domestic ferret)   0
Ailuropoda_melanoleuca_69_1   (Giant panda)   2
Canis_familiaris_69_3.1   (Dog)   1
Felis_catus_69   (Domestic cat)   1
Equus_caballus_69_2   (Horse)   1
Myotis_lucifugus_69_2.0   (Little brown bat)   2
Pteropus_vampyrus_69_1   (Large flying fox)   2
Sorex_araneus_69_1   (European shrew)   0
Erinaceus_europaeus_69   (Western European hedgehog)   0
Procavia_capensis_69_1   (Cape rock hyrax)   2
Loxodonta_africana_69_3   (African savanna elephant)   1
Echinops_telfairi_69   (Small Madagascar hedgehog)   2
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   0
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   1
Macropus_eugenii_69_1.0   (Tammar wallaby)   1
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   1
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   2
Ornithorhynchus_anatinus_69_5   (Platypus)   2
Petromyzon_marinus_69_7.0   (Sea lamprey)   0
Meleagris_gallopavo_69_2   (Turkey)   2
Gallus_gallus_69_2   (Chicken)   1
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   0
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   2
Anolis_carolinensis_69_2.0   (Green anole)   1
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   0
Latimeria_chalumnae_69_1   (Coelacanth)   1
Gadus_morhua_69_1   (Atlantic cod)   2
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   0
Takifugu_rubripes_69_4   (Torafugu)   4
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   4
Oryzias_latipes_69_1   (Japanese medaka)   1
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   2
Oreochromis_niloticus_69_1.0   (Nile tilapia)   3
Danio_rerio_69_9   (Zebrafish)   2

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   3
Homo_sapiens__(NCBI_version)   (Human)   1
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   1
NCBI_plasmid_sequences_(Plasmids) 19
Protein_Data_Bank_(all_PDB_sequenc) 3
STRING_v9.0.5_(STRING) 62
UniProt__viral_sequences_(Viral) 2
Uniprot_2018_03_genome 2676
NCBI_2017_08_genome 1377
PDB_chains_(SCOP_1.75)_(PDB) 0
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 2
NCBI_viral_sequences_(Viral) 2
TargetDB__(Targets) 0

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.