SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

  Home > SCOP hierarchy > Domain combination - _gap_,49695,_gap_

Domain combinations for _gap_,49695,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

49695 - gamma-Crystallin-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

Jump to [ Top of page · Domain combinations in individual genomes ]

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   8
Pan_troglodytes_76_2.1.4   (Chimpanzee)   6
Gorilla_gorilla_76_3.1   (Western gorilla)   7
Pongo_abelii_76_2   (Sumatran orangutan)   4
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   6
Papio_anubis_76   (Olive baboon)   6
Macaca_mulatta_76_1   (Rhesus monkey)   8
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   7
Otolemur_garnettii_76_3   (Small-eared galago)   6
Microcebus_murinus_76_1   (Gray mouse lemur)   2
Rattus_norvegicus_76_5.0   (Norway rat)   6
Mus_musculus_76_38   (House mouse)   15
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   2
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   6
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   5
Cavia_porcellus_76_3   (Domestic guinea pig)   8
Oryctolagus_cuniculus_76_2   (Rabbit)   9
Ochotona_princeps_76   (American pika)   4
Tupaia_belangeri_76   (Northern tree shrew)   1
Sus_scrofa_76_10.2   (Pig)   5
Bos_taurus_76_3.1   (Cattle)   7
Ovis_aries_76_3.1   (Sheep)   8
Vicugna_pacos_76_1   (Alpaca)   1
Tursiops_truncatus_76_1   (Bottlenose dolphin)   5
Mustela_putorius_furo_76_1.0   (Domestic ferret)   8
Ailuropoda_melanoleuca_76_1   (Giant panda)   7
Canis_familiaris_76_3.1   (Dog)   9
Felis_catus_76_6.2   (Domestic cat)   9
Equus_caballus_76_2   (Horse)   4
Myotis_lucifugus_76_2.0   (Little brown bat)   2
Pteropus_vampyrus_76_1   (Large flying fox)   4
Sorex_araneus_76_1   (European shrew)   1
Erinaceus_europaeus_76   (Western European hedgehog)   3
Procavia_capensis_76_1   (Cape rock hyrax)   4
Loxodonta_africana_76_3   (African savanna elephant)   7
Echinops_telfairi_76   (Small Madagascar hedgehog)   2
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   7
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   1
Macropus_eugenii_76_1.0   (Tammar wallaby)   2
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   9
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   7
Ornithorhynchus_anatinus_76_5   (Platypus)   4
Petromyzon_marinus_76_7.0   (Sea lamprey)   4
Meleagris_gallopavo_76_2   (Turkey)   9
Gallus_gallus_76_4   (Chicken)   7
Anas_platyrhynchos_76_1.0   (Mallard)   3
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   3
Ficedula_albicollis_76_1.0   (Collared flycatcher)   7
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   7
Anolis_carolinensis_76_2.0   (Green anole)   3
Xenopus_laevis_   (African clawed frog)   23
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   13
Latimeria_chalumnae_76_1   (Coelacanth)   14
Lepisosteus_oculatus_76   (Spotted gar)   22
Gadus_morhua_76_1   (Atlantic cod)   14
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   19
Takifugu_rubripes_76_4   (Torafugu)   53
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   27
Oryzias_latipes_76_1   (Japanese medaka)   33
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   15
Poecilia_formosa_76   (Amazon molly)   26
Oreochromis_niloticus_76_1.0   (Nile tilapia)   28
Astyanax_mexicanus_76   (Mexican tetra)   18
Danio_rerio_76_9   (Zebrafish)   27
Daphnia_pulex_   (Common water flea)   1
Pristionchus_pacificus_ 0
Schistosoma_mansoni_ 1
Mnemiopsis_leidyi   (Sea walnut)   3
Ostreococcus_lucimarinus_CCE9901_ 0
Cyanophora_paradoxa_ 1
Paramecium_tetraurelia_ 0
Tetrahymena_thermophila_SB210_1_ 1
Nostoc_sp._PCC_7524 0
Anaerolinea_thermophila_UNI-1 0
Clostridium_beijerinckii_NCIMB_8052 1
Chlorobium_chlorochromatii_CaD3 1
Niastella_koreensis_GR20-10 2
Chitinophaga_pinensis_DSM_2588 2
Desulfococcus_oleovorans_Hxd3 1
Azoarcus_sp._KH32C 1
Rhodoferax_ferrireducens_T118 1
Maricaulis_maris_MCS10 0
Hyphomonas_neptunium_ATCC_15444 1
Rhodospirillum_centenum_SW 1
Cellvibrio_japonicus_Ueda107 0
Vibrio_cholerae_O395 1
Psychromonas_ingrahamii_37 0
Rahnella_sp._Y9602 0
Yersinia_pestis_Pestoides_F 0

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   20
Dactylococcopsis_salina_PCC_8305 0
Amycolatopsis_orientalis_HCCB10007 1
Vibrio_cholerae_M66-2 0
Vibrio_cholerae_O395 1
Vibrio_cholerae_IEC224 0
Vibrio_cholerae_O1_str._2010EL-1786 0
Vibrio_cholerae_MJ-1236 0
Yersinia_pseudotuberculosis_PB1/+ 0
Yersinia_pseudotuberculosis_YPIII 0
Yersinia_pseudotuberculosis_IP_32953 0
Yersinia_pestis_biovar_Microtus_str._91001 0
Yersinia_pestis_A1122 0
Yersinia_pestis_Z176003 0
Yersinia_pestis_D182038 0
Yersinia_pestis_D106004 0
Yersinia_pestis_biovar_Medievalis_str._Harbin_35 0
Yersinia_pestis_Nepal516 0
Yersinia_pestis_Antiqua 0
Yersinia_pestis_Angola 0
Yersinia_pestis_CO92 0
Yersinia_pestis_KIM10+ 0

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   7
Pan_troglodytes_69_2.1.4   (Chimpanzee)   6
Gorilla_gorilla_69_3.1   (Western gorilla)   5
Pongo_abelii_69_2   (Sumatran orangutan)   4
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   6
Macaca_mulatta_69_1   (Rhesus monkey)   7
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   5
Otolemur_garnettii_69_3   (Small-eared galago)   6
Microcebus_murinus_69_1   (Gray mouse lemur)   2
Rattus_norvegicus_69_3.4   (Norway rat)   3
Mus_musculus_69_38   (House mouse)   7
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   2
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   6
Cavia_porcellus_69_3   (Domestic guinea pig)   7
Oryctolagus_cuniculus_69_2   (Rabbit)   8
Ochotona_princeps_69   (American pika)   4
Tupaia_belangeri_69   (Northern tree shrew)   1
Sus_scrofa_69_10.2   (Pig)   5
Bos_taurus_69_3.1   (Cattle)   7
Vicugna_pacos_69_1   (Alpaca)   1
Tursiops_truncatus_69_1   (Bottlenose dolphin)   5
Mustela_putorius_furo_69_1.0   (Domestic ferret)   8
Ailuropoda_melanoleuca_69_1   (Giant panda)   5
Canis_familiaris_69_3.1   (Dog)   8
Felis_catus_69   (Domestic cat)   3
Equus_caballus_69_2   (Horse)   4
Myotis_lucifugus_69_2.0   (Little brown bat)   2
Pteropus_vampyrus_69_1   (Large flying fox)   4
Sorex_araneus_69_1   (European shrew)   1
Erinaceus_europaeus_69   (Western European hedgehog)   3
Procavia_capensis_69_1   (Cape rock hyrax)   4
Loxodonta_africana_69_3   (African savanna elephant)   7
Echinops_telfairi_69   (Small Madagascar hedgehog)   2
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   2
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   1
Macropus_eugenii_69_1.0   (Tammar wallaby)   2
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   7
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   6
Ornithorhynchus_anatinus_69_5   (Platypus)   4
Petromyzon_marinus_69_7.0   (Sea lamprey)   4
Meleagris_gallopavo_69_2   (Turkey)   6
Gallus_gallus_69_2   (Chicken)   6
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   3
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   6
Anolis_carolinensis_69_2.0   (Green anole)   3
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   12
Latimeria_chalumnae_69_1   (Coelacanth)   14
Gadus_morhua_69_1   (Atlantic cod)   14
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   19
Takifugu_rubripes_69_4   (Torafugu)   20
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   18
Oryzias_latipes_69_1   (Japanese medaka)   17
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   15
Oreochromis_niloticus_69_1.0   (Nile tilapia)   26
Danio_rerio_69_9   (Zebrafish)   19

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   8
Homo_sapiens__(NCBI_version)   (Human)   9
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   7
NCBI_plasmid_sequences_(Plasmids) 1
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 1
STRING_v9.0.5_(STRING) 207
Uniprot_2018_03_genome 7610
TargetDB__(Targets) 1
NCBI_2017_08_genome 3106
NCBI_viral_sequences_(Viral) 1
PDB_chains_(SCOP_1.75)_(PDB) 3

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

Please send feedback, comments or questions to superfamily@cs.bris.ac.uk or use the feedback form.

© Copyright 2013 The SUPERFAMILY authors and Julian Gough.