SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain combinations for _gap_,49785,51445,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

49785 - Galactose-binding domain-like
51445 - (Trans)glycosidases

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


Jump to [ Top of page · Domain combinations in individual genomes ]

Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Oikopleura_dioica 0
Lucilia_cuprina   (Australian sheep blowfly)   0
Proterospongia_sp._ATCC_50818_ 1
Sporisorium_reilianum_22 1
Sphaerobolus_stellatus_v1.0 2
Amanita_thiersii_Skay4041_v1.0 1
Daldinia_eschscholzii_EC12_v1.0 1
Thielavia_terrestris_NRRL_8126_ 1
Mycosphaerella_graminicola_IPO323_ 1
Mycosphaerella_fijiensis_CIRAD86_ 1
Selaginella_moellendorffii_ 1
Eucalyptus_grandis_v201   (Rose gum)   1
Gossypium_raimondii_v221 3
Citrus_clementina_v165 1
Thellungiella_halophila_v173 2
Carica_papaya_   (Papaya)   1
Medicago_truncatula_   (Barrel medic)   2
Fragaria_vesca_   (Wild strawberry)   0
Prunus_persica_v139   (Peach)   1
Linum_usitatissimum_v200   (Flax)   2
Mimulus_guttatus_v140   (Spotted monkey flower)   1
Solanum_lycopersicum_v.2.3   (Tomato)   2
Triticum_urartu_22 1
Brachypodium_distachyon_   (Stiff brome)   3
Oryza_barthii_22   (African wild rice)   2
Oryza_meridionalis_22 1
Oryza_glumaepatula_22 1
Oryza_glaberrima   (African rice)   2
Oryza_punctata_22 2
Oryza_nivara_22 1
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   4
Oryza_sativa_v193   (Rice)   4
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   1
Panicum_virgatum_v202   (Switchgrass)   5
Setaria_italica_v164   (Foxtail millet)   5
Zea_mays_subsp._mays_   (Maize)   5
Zea_mays_v181   (Maize)   5
Sorghum_bicolor_   (Sorghum)   1
Musa_balbisiana   (Balbis banana)   1
Physcomitrella_patens 1
Chlorella_variabilis_sp._NC64A_ 1
Volvox_carteri_f._nagariensis_ 0
Streptomyces_avermitilis_MA-4680 1
Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382 1
Xylanimonas_cellulosilytica_DSM_15894 0
Arthrobacter_phenanthrenivorans_Sphe3 1
Coprococcus_sp._ART55/1 0
Roseburia_intestinalis 0
Paenibacillus_terrae_HPL-003 0
Paenibacillus_polymyxa_M1 0
Tannerella_forsythia_ATCC_43037 0
Owenweeksia_hongkongensis_DSM_17368 1
Fibrobacter_succinogenes_subsp._succinogenes_S85 1
Opitutus_terrae_PB90-1 2
Sphaerochaeta_coccoides_DSM_17374 1
Granulicella_mallensis_MP5ACTX8 1
Candidatus_Koribacter_versatilis_Ellin345 2
Terriglobus_roseus_DSM_18391 1
Acidobacterium_capsulatum_ATCC_51196 2

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   2
Clavibacter_michiganensis_subsp._nebraskensis_NCPPB_2581 1
Chthonomonas_calidirosea_T49 1
Roseburia_intestinalis_XB6B4 0
Paenibacillus_polymyxa_CR1 0
Paenibacillus_polymyxa_SC2 0
Paenibacillus_polymyxa_E681 0
Fibrobacter_succinogenes_subsp._succinogenes_S85 1

Others
Genome     Number
Nicotiana_benthamiana_0.4.4_(Early_draft) 1
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   2
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   2
NCBI_2017_08_genome 367
STRING_v9.0.5_(STRING) 17
Uniprot_2018_03_genome 3411

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]