SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for _gap_,49785,57196,57196,57196,50242 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

49785 - Galactose-binding domain-like
57196 - EGF/Laminin
57196 - EGF/Laminin
57196 - EGF/Laminin
50242 - TIMP-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Xenopus_laevis_   (African clawed frog)   3
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   3
Takifugu_rubripes_76_4   (Torafugu)   2
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   1

Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   2

Longest transcript per gene
Genome     Number
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   2

Others
Genome     Number
Uniprot_2018_03_genome 144
NCBI_2017_08_genome 10

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