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  Home > SCOP hierarchy > Domain combination - _gap_,49785,63446

Domain combinations for _gap_,49785,63446 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

49785 - Galactose-binding domain-like
63446 - Type I dockerin domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Clostridium_clariflavum_DSM_19732 1
Clostridium_cellulolyticum_H10 0
Clostridium_thermocellum_ATCC_27405 0
Ruminococcus_albus_7 1
Clostridium_sp._BNL1100 0
Lactobacillus_casei_ATCC_334 0
Desulfatibacillum_alkenivorans_AK-01 1
Methanosphaerula_palustris_E1-9c 2

Strains
Genome     Number
Clostridium_thermocellum_DSM_1313 0
Ruminococcus_champanellensis_18P13 0

Others
Genome     Number
NCBI_plasmid_sequences_(Plasmids) 1
STRING_v9.0.5_(STRING) 3
Uniprot_2018_03_genome 108
NCBI_2017_08_genome 18

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.