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  Home > SCOP hierarchy > Domain combination - _gap_,49785,_gap_

Domain combinations for _gap_,49785,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

49785 - Galactose-binding domain-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   5
Pan_troglodytes_76_2.1.4   (Chimpanzee)   2
Gorilla_gorilla_76_3.1   (Western gorilla)   2
Pongo_abelii_76_2   (Sumatran orangutan)   1
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   1
Papio_anubis_76   (Olive baboon)   2
Macaca_mulatta_76_1   (Rhesus monkey)   3
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   4
Otolemur_garnettii_76_3   (Small-eared galago)   1
Microcebus_murinus_76_1   (Gray mouse lemur)   2
Rattus_norvegicus_76_5.0   (Norway rat)   1
Mus_musculus_76_38   (House mouse)   3
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   1
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   3
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   1
Cavia_porcellus_76_3   (Domestic guinea pig)   1
Oryctolagus_cuniculus_76_2   (Rabbit)   1
Ochotona_princeps_76   (American pika)   1
Tupaia_belangeri_76   (Northern tree shrew)   2
Sus_scrofa_76_10.2   (Pig)   4
Bos_taurus_76_3.1   (Cattle)   1
Ovis_aries_76_3.1   (Sheep)   1
Vicugna_pacos_76_1   (Alpaca)   1
Tursiops_truncatus_76_1   (Bottlenose dolphin)   1
Mustela_putorius_furo_76_1.0   (Domestic ferret)   3
Ailuropoda_melanoleuca_76_1   (Giant panda)   3
Canis_familiaris_76_3.1   (Dog)   1
Felis_catus_76_6.2   (Domestic cat)   1
Equus_caballus_76_2   (Horse)   1
Myotis_lucifugus_76_2.0   (Little brown bat)   1
Pteropus_vampyrus_76_1   (Large flying fox)   0
Sorex_araneus_76_1   (European shrew)   1
Erinaceus_europaeus_76   (Western European hedgehog)   1
Procavia_capensis_76_1   (Cape rock hyrax)   1
Loxodonta_africana_76_3   (African savanna elephant)   0
Echinops_telfairi_76   (Small Madagascar hedgehog)   0
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   1
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   1
Macropus_eugenii_76_1.0   (Tammar wallaby)   0
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   3
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   2
Ornithorhynchus_anatinus_76_5   (Platypus)   2
Saccoglossus_kowalevskii_v3.0 1
Petromyzon_marinus_76_7.0   (Sea lamprey)   0
Meleagris_gallopavo_76_2   (Turkey)   1
Gallus_gallus_76_4   (Chicken)   1
Anas_platyrhynchos_76_1.0   (Mallard)   1
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   1
Ficedula_albicollis_76_1.0   (Collared flycatcher)   1
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   1
Anolis_carolinensis_76_2.0   (Green anole)   1
Xenopus_laevis_   (African clawed frog)   0
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   1
Latimeria_chalumnae_76_1   (Coelacanth)   2
Lepisosteus_oculatus_76   (Spotted gar)   0
Gadus_morhua_76_1   (Atlantic cod)   0
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   1
Takifugu_rubripes_76_4   (Torafugu)   0
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   0
Oryzias_latipes_76_1   (Japanese medaka)   0
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   0
Poecilia_formosa_76   (Amazon molly)   0
Oreochromis_niloticus_76_1.0   (Nile tilapia)   0
Astyanax_mexicanus_76   (Mexican tetra)   0
Danio_rerio_76_9   (Zebrafish)   1
Oikopleura_dioica 2
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   0
Ciona_intestinalis_76   (Vase tunicate)   0
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   3
Adineta_vaga 0
Octopus_bimaculoides_280 6
Crassostrea_gigas_22   (Pacific oyster)   13
Lottia_gigantea_   (Owl limpet)   7
Helobdella_robusta_ 40
Capitella_sp._I_ 18
Danaus_plexippus_OGS1.0   (Monarch butterfly)   0
Heliconius_melpomene_   (Postman butterfly)   1
Bombyx_mori_   (Domestic silkworm)   1
Nasonia_vitripennis_   (Jewel wasp)   0
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   0
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   1
Linepithema_humile_v1.1   (Argentine ant)   0
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   1
Solenopsis_invicta_v.2.2.3   (Red fire ant)   0
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   1
Atta_cephalotes_v1.1 1
Camponotus_floridanus_v3.3   (Florida carpenter ant)   1
Lucilia_cuprina   (Australian sheep blowfly)   0
Drosophila_grimshawi_1.3 1
Drosophila_willistoni_1.3 1
Drosophila_pseudoobscura_2.13 1
Drosophila_persimilis_1.3 1
Drosophila_suzukii 1
Drosophila_yakuba_1.3 2
Drosophila_simulans_1.3 1
Drosophila_sechellia_1.3 1
Drosophila_melanogaster_76_5   (Fruit fly)   6
Drosophila_erecta_1.3 1
Drosophila_ananassae_1.3 1
Drosophila_virilis_1.2 1
Drosophila_mojavensis_1.3 1
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   1
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   1
Anopheles_gambiae_49_3j   (African malaria mosquito)   1
Tribolium_castaneum_3.0   (Red flour beetle)   1
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   0
Acyrthosiphon_pisum_   (Pea aphid)   0
Rhodnius_prolixus_22 0
Daphnia_pulex_   (Common water flea)   0
Strigamia_maritima_22 4
Tetranychus_urticae_   (Two-spotted spider mite)   3
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   1
Pristionchus_pacificus_ 1
Meloidogyne_incognita_   (Southern root-knot nematode)   0
Meloidogyne_hapla_ 1
Onchocerca_volvulus_22 0
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   2
Caenorhabditis_japonica_ 1
Caenorhabditis_brenneri_ 0
Caenorhabditis_remanei_ 1
Caenorhabditis_elegans_76_235   (Roundworm)   1
Caenorhabditis_briggsae_2 0
Trichinella_spiralis_22 0
Hymenolepis_microstoma_ 2
Echinococcus_multilocularis_ 1
Echinococcus_granulosus_ 1
Taenia_solium_   (Pork tapeworm)   1
Schistosoma_mansoni_ 4
Mnemiopsis_leidyi   (Sea walnut)   8
Acropora_digitifera_v1.0 3
Nematostella_vectensis_1.0   (Starlet sea anemone)   6
Hydra_vulgaris 2
Amphimedon_queenslandica 3
Trichoplax_adhaerens_ 2
Proterospongia_sp._ATCC_50818_ 1
Monosiga_brevicollis_ 2
Sphaeroforma_arctica_JP610_ 1
Capsaspora_owczarzaki_ATCC_30864_ 2
Conidiobolus_coronatus_NRRL28638_v1.0 1
Mortierella_verticillata_NRRL_6337_ 0
Phycomyces_blakesleeanus_ 0
Rhizopus_oryzae_RA_99-880_ 1
Rhizomucor_miehei_CAU432_ 1
Sporisorium_reilianum_22 0
Ustilago_maydis_ 0
Mixia_osmundae_IAM_14324_v1.0 1
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 0
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 0
Melampsora_laricis-populina_ 0
Sporobolomyces_roseus_IAM_13481_ 0
Microbotryum_violaceum_22 2
Wallemia_sebi_v1.0 1
Sphaerobolus_stellatus_v1.0 1
Piloderma_croceum_F_1598_v1.0 1
Coniophora_puteana 1
Hydnomerulius_pinastri_v2.0 1
Paxillus_rubicundulus_Ve08.2h10_v1.0 1
Coprinopsis_cinerea_okayama7_130_v3 1
Amanita_thiersii_Skay4041_v1.0 4
Amanita_muscaria_Koide_v1.0   (Fly agaric)   3
Galerina_marginata_v1.0 3
Heterobasidion_annosum_ 1
Sebacina_vermifera_MAFF_305830_v1.0 1
Tulasnella_calospora_AL13/4D_v1.0 1
Postia_placenta_ 1
Trametes_versicolor_v1.0 1
Daldinia_eschscholzii_EC12_v1.0 1
Apiospora_montagnei_NRRL_25634_v1.0 2
Magnaporthe_poae_ATCC_64411_22 1
Magnaporthe_grisea_70-15_ 1
Podospora_anserina_ 1
Thielavia_terrestris_NRRL_8126_ 1
Chaetomium_globosum_CBS_148.51_ 1
Neurospora_tetrasperma_ 1
Neurospora_discreta_FGSC_8579_ 1
Neurospora_crassa_OR74A_ 1
Cryphonectria_parasitica_   (Chestnut blight fungus)   2
Verticillium_albo-atrum_VaMs.102_ 1
Verticillium_dahliae_VdLs.17_ 1
Acremonium_alcalophilumv_1.0 2
Fusarium_graminearum_ 1
Nectria_haematococca_mpVI_ 3
Fusarium_oxysporum_f._sp._lycopersici_4286_ 2
Fusarium_verticillioides_7600_ 1
Trichoderma_asperellum_CBS_433.97_v1.0 1
Trichoderma_atroviride_ 0
Trichoderma_citrinoviride_v1.0 1
Trichoderma_reesei_1.2 2
Trichoderma_virens_Gv29-8_ 1
Trichoderma_harzianum_CBS_226.95_v1.0 1
Amorphotheca_resinae_v1.0   (Creosote fungus)   1
Botrytis_cinerea_B05.10_ 1
Sclerotinia_sclerotiorum_ 2
Blumeria_graminis_22 1
Didymella_exigua_CBS_183.55_v1.0 2
Leptosphaeria_maculans_22 3
Setosphaeria_turcica_v1.0 1
Cochliobolus_miyabeanus_ATCC_44560_v1.0 2
Cochliobolus_victoriae_FI3_v1.0 2
Cochliobolus_carbonum_26-R-13_v1.0 2
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   2
Cochliobolus_lunatus_m118_v2.0 2
Pyrenophora_teres_f._teres_22 1
Pyrenophora_tritici-repentis_ 3
Stagonospora_nodorum_ 3
Mycosphaerella_graminicola_IPO323_ 1
Zasmidium_cellare_ATCC_36951_v1.0 0
Septoria_musiva_v1.0 3
Paracoccidioides_brasiliensis_Pb18_ 3
Coccidioides_posadasii_RMSCC_3488_ 2
Coccidioides_immitis_RS_ 2
Ajellomyces_dermatitidis_SLH14081_ 3
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 2
Microsporum_canis_CBS_113480_ 2
Trichophyton_equinum_CBS_127.97_ 1
Trichophyton_verrucosum_HKI_0517_ 2
Arthroderma_benhamiae_CBS_112371_ 2
Trichophyton_tonsurans_CBS_112818_ 2
Trichophyton_rubrum_CBS_118892_ 2
Uncinocarpus_reesii_1704_ 1
Aspergillus_zonatus_v1.0 2
Penicillium_chrysogenum_Wisconsin_54-1255_ 4
Penicillium_chrysogenum_v1.0 3
Aspergillus_acidus_v1.0 2
Aspergillus_fumigatus_Af293 2
Aspergillus_brasiliensis_v1.0 3
Aspergillus_nidulans_FGSC_A4_ 2
Aspergillus_sydowii_v1.0 2
Aspergillus_versicolor_v1.0 2
Aspergillus_glaucus 2
Aspergillus_carbonarius_ITEM_5010_ 3
Neosartorya_fischeri_NRRL_181_ 2
Aspergillus_terreus_NIH2624_ 2
Aspergillus_tubingensis_v1.0 3
Aspergillus_wentii_v1.0 2
Aspergillus_oryzae_RIB40_ 1
Aspergillus_niger_22 2
Aspergillus_niger_ATCC_1015_ 2
Aspergillus_flavus_NRRL3357_ 2
Aspergillus_clavatus_NRRL_1_ 3
Penicillium_marneffei_ATCC_18224_ 2
Tuber_melanosporum_Vittad_   (Perigord truffle)   1
Dekkera_bruxellensis_CBS_2499_v2.0 1
Candida_tanzawaensis_NRRL_Y-17324__v1.0 3
Candida_dubliniensis_CD36_ 2
Candida_tropicalis_MYA-3404_ 2
Candida_parapsilosis_ 2
Candida_albicans_SC5314 2
Lodderomyces_elongisporus_NRRL_YB-4239_ 2
Babjeviella_inositovora_NRRL_Y-12698_v1.0 1
Pichia_stipitis_CBS_6054_ 2
Candida_guilliermondii_ATCC_6260_ 2
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 2
Debaromyces_hansenii 2
Pichia_pastoris_GS115_ 1
Yarrowia_lipolytica_CLIB122 1
Candida_lusitaniae_ATCC_42720_ 2
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 2
Vanderwaltozyma_polyspora_DSM_70294_ 1
Kluyveromyces_thermotolerans_CBS_6340 1
Lachancea_kluyveri_ 1
Kluyveromyces_waltii 1
Ashbya_gossypii_ATCC_10895_ 1
Saccharomyces_paradoxus_MIT 1
Saccharomyces_cerevisiae_76   (Baker's yeast)   1
Kluyveromyces_lactis 1
Schizosaccharomyces_japonicus_yFS275_ 1
Catenaria_anguillulae_PL171_v1.0 0
Spizellomyces_punctatus_DAOM_BR117_ 2
Dictyostelium_discoideum 1
Dictyostelium_purpureum_ 1
Entamoeba_dispar_1.2 1
Entamoeba_invadens_1.2 4
Entamoeba_histolytica_1 1
Selaginella_moellendorffii_ 6
Pinus_taeda   (Loblolly pine)   0
Picea_abies   (Norway spruce)   3
Eucalyptus_grandis_v201   (Rose gum)   5
Theobroma_cacao_B97-61/B2_v1   (Cacao)   3
Gossypium_raimondii_v221 6
Citrus_clementina_v165 2
Citrus_sinensis_v154   (Sweet orange)   6
Thellungiella_halophila_v173 7
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   4
Capsella_rubella_v183 5
Arabidopsis_lyrata_   (Lyrate rockcress)   4
Arabidopsis_thaliana_10   (Thale cress)   6
Carica_papaya_   (Papaya)   3
Medicago_truncatula_   (Barrel medic)   4
Phaseolus_vulgaris_v186   (French bean)   3
Glycine_max_v109   (Soybean)   7
Cucumis_sativus_v122   (Cucumber)   6
Fragaria_vesca_   (Wild strawberry)   5
Malus_domestica_v196   (Apple)   9
Prunus_persica_v139   (Peach)   3
Linum_usitatissimum_v200   (Flax)   5
Manihot_esculenta_v147   (Cassava)   5
Populus_trichocarpa_v156   (Black cottonwood)   4
Vitis_vinifera_   (Wine grape)   2
Mimulus_guttatus_v140   (Spotted monkey flower)   1
Solanum_lycopersicum_v.2.3   (Tomato)   1
Solanum_tuberosum_   (Potato)   6
Actinidia_chinensis_Hongyang_ 3
Aquilegia_coerulea_v195 4
Triticum_urartu_22 3
Triticum_aestivum_22   (Bread wheat)   4
Aegilops_tauschii_22 5
Brachypodium_distachyon_   (Stiff brome)   2
Oryza_barthii_22   (African wild rice)   3
Oryza_meridionalis_22 2
Oryza_glumaepatula_22 5
Oryza_glaberrima   (African rice)   1
Oryza_punctata_22 2
Oryza_nivara_22 2
Oryza_brachyantha_22   (Malo sina)   4
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   2
Oryza_sativa_v193   (Rice)   2
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   6
Panicum_virgatum_v202   (Switchgrass)   7
Setaria_italica_v164   (Foxtail millet)   5
Zea_mays_subsp._mays_   (Maize)   5
Zea_mays_v181   (Maize)   6
Sorghum_bicolor_   (Sorghum)   3
Musa_balbisiana   (Balbis banana)   4
Musa_acuminata_22   (Wild Malaysian banana)   3
Amborella_trichopoda_22 2
Physcomitrella_patens 2
Coccomyxa_subellipsoidea_sp._C-169_v2 0
Chlorella_variabilis_sp._NC64A_ 0
Chlorella_vulgaris_ 0
Volvox_carteri_f._nagariensis_ 8
Volvox_carteri_v199 6
Chlamydomonas_reinhardtii_4.0 4
Ostreococcus_sp._RCC809_ 2
Ostreococcus_lucimarinus_CCE9901_ 1
Bathycoccus_prasinos_ 2
Micromonas_sp._RCC299_ 4
Micromonas_pusilla_CCMP1545_v3.0 3
Cyanidioschyzon_merolae_strain_10D_22 1
Cyanidioschyzon_merolae 1
Porphyridium_purpureum_02_2012 2
Thecamonas_trahens_ATCC_50062_ 1
Bigelowiella_natans_CCMP2755_22 5
Cyanophora_paradoxa_ 5
Trypanosoma_brucei_gambiense_v4.1 1
Trypanosoma_brucei_TREU927_v4.1 1
Ectocarpus_siliculosus 3
Aureococcus_anophagefferens_ 1
Albugo_laibachii_22 1
Pythium_iwayamai_DAOM_BR242034_22 1
Pythium_arrhenomanes_ATCC_12531_22 1
Pythium_ultimum_v1.7-2 5
Pythium_aphanidermatum_DAOM_BR444_22 2
Pythium_irregulare_DAOM_BR486_22 3
Pythium_vexans_DAOM_BR484_22 3
Phytophthora_ramorum_1.1   (Sudden oak death agent)   1
Phytophthora_sojae_1.1 3
Phytophthora_infestans_T30-4_ 1
Phytophthora_capsici_ 4
Hyaloperonospora_arabidopsidis_22 2
Phaeodactylum_tricornutumCCAP_1055/1 2
Fragilariopsis_cylindrus 2
Thalassiosira_pseudonana_CCMP1335 5
Perkinsus_marinus_ATCC_50983_ 0
Paramecium_tetraurelia_ 2
Tetrahymena_thermophila_SB210_1_ 2
Ichthyophthirius_multifiliis_strain_G5_ 1
Cryptosporidium_hominis 0
Cryptosporidium_parvum_Iowa_II 0
Neospora_caninum 2
Toxoplasma_gondii_VEG 1
Toxoplasma_gondii_ME49 2
Toxoplasma_gondii_GT1 2
Plasmodium_falciparum_3D7_ 1
Plasmodium_vivax_SaI-1_7.0 1
Plasmodium_knowlesi_strain_H_ 1
Plasmodium_yoelii_ssp._yoelii_1_ 0
Plasmodium_chabaudi_ 0
Plasmodium_berghei_ANKA_ 0
Symbiodinium_minutum_clade_B1_v1.2 10
Naegleria_gruberi_ 4
Trichomonas_vaginalis_ 4
Guillardia_theta_CCMP2712_v1.0_ 3
Emiliania_huxleyi_CCMP1516_ 1
Thermobaculum_terrenum_ATCC_BAA-798 0
Leptolyngbya_sp._PCC_7376 1
Pseudanabaena_sp._PCC_7367 1
Trichodesmium_erythraeum_IMS101 0
Microcystis_aeruginosa_NIES-843 0
Calothrix_sp._PCC_7507 1
Nostoc_sp._PCC_7107 1
Anabaena_sp._90 0
Mycoplasma_crocodyli_MP145 0
Conexibacter_woesei_DSM_14684 0
Eggerthella_lenta_DSM_2243 0
Slackia_heliotrinireducens_DSM_20476 0
Atopobium_parvulum_DSM_20469 0
Rubrobacter_xylanophilus_DSM_9941 0
Ilumatobacter_coccineus 0
Geodermatophilus_obscurus_DSM_43160 0
Catenulispora_acidiphila_DSM_44928 1
Frankia_symbiont_of_Datisca_glomerata 0
Frankia_sp._EAN1pec 2
Frankia_alni_ACN14a 1
Thermobifida_fusca_YX 1
Nocardiopsis_dassonvillei_subsp._dassonvillei_DSM_43111 0
Thermomonospora_curvata_DSM_43183 1
Kitasatospora_setae_KM-6054 0
Streptomyces_coelicolor_A3(2) 0
Streptomyces_sp._PAMC26508 1
Streptomyces_flavogriseus_ATCC_33331 1
Streptomyces_sp._SirexAA-E 0
Streptomyces_griseus_subsp._griseus_NBRC_13350 1
Streptomyces_bingchenggensis_BCW-1 1
Streptomyces_violaceusniger_Tu_4113 2
Streptomyces_avermitilis_MA-4680 1
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 0
Streptomyces_scabiei_87.22 1
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 0
Actinosynnema_mirum_DSM_43827 0
Saccharomonospora_viridis_DSM_43017 0
Amycolatopsis_mediterranei_U32 1
Kribbella_flavida_DSM_17836 1
Nocardioides_sp._JS614 0
Salinispora_arenicola_CNS-205 1
Salinispora_tropica_CNB-440 1
Verrucosispora_maris_AB-18-032 1
Micromonospora_sp._L5 0
Micromonospora_aurantiaca_ATCC_27029 0
Actinoplanes_sp._N902-109 1
Actinoplanes_sp._SE50/110 0
Actinoplanes_missouriensis_431 0
Segniliparus_rotundus_DSM_44985 0
Tsukamurella_paurometabola_DSM_20162 0
Gordonia_sp._KTR9 1
Gordonia_polyisoprenivorans_VH2 0
Gordonia_bronchialis_DSM_43247 1
Rhodococcus_jostii_RHA1 0
Rhodococcus_equi_103S 0
Rhodococcus_opacus_B4 0
Rhodococcus_erythropolis_PR4 0
Nocardia_cyriacigeorgica_GUH-2 0
Nocardia_farcinica_IFM_10152 0
Amycolicicoccus_subflavus_DQS3-9A1 0
Mycobacterium_massiliense_str._GO_06 0
Mycobacterium_abscessus_ATCC_19977 2
Mycobacterium_sp._JLS 0
Mycobacterium_intracellulare_ATCC_13950 0
Mycobacterium_avium_104 0
Mycobacterium_vanbaalenii_PYR-1 1
Mycobacterium_canettii_CIPT_140010059 0
Mycobacterium_africanum_GM041182 0
Mycobacterium_tuberculosis_KZN_1435 0
Mycobacterium_tuberculosis 0
Mycobacterium_bovis_BCG_str._Pasteur_1173P2 0
Mycobacterium_rhodesiae_NBB3 1
Mycobacterium_ulcerans_Agy99 0
Mycobacterium_gilvum_PYR-GCK 0
Mycobacterium_chubuense_NBB4 2
Mycobacterium_marinum_M 1
Mycobacterium_smegmatis_str._MC2_155 0
Mycobacterium_leprae_Br4923 0
Corynebacterium_resistens_DSM_45100 1
Corynebacterium_urealyticum_DSM_7109 1
Sanguibacter_keddieii_DSM_10542 0
Beutenbergia_cavernae_DSM_12333 0
Microbacterium_testaceum_StLB037 0
Intrasporangium_calvum_DSM_43043 1
Brachybacterium_faecium_DSM_4810 0
Isoptericola_variabilis_225 0
Xylanimonas_cellulosilytica_DSM_15894 0
Cellulomonas_fimi_ATCC_484 0
[Cellvibrio]_gilvus_ATCC_13127 0
Arthrobacter_chlorophenolicus_A6 0
Renibacterium_salmoninarum_ATCC_33209 2
Bifidobacterium_longum_subsp._longum_JDM301 0
Bifidobacterium_animalis_subsp._lactis_Bl-04 1
Bifidobacterium_dentium_Bd1 0
Bifidobacterium_bifidum_S17 0
Arcanobacterium_haemolyticum_DSM_20595 0
Herpetosiphon_aurantiacus_DSM_785 2
Chloroflexus_sp._Y-400-fl 1
Chloroflexus_aurantiacus_J-10-fl 1
Truepera_radiovictrix_DSM_17093 1
Deinococcus_geothermalis_DSM_11300 0
Oceanithermus_profundus_DSM_14977 1
Anaerococcus_prevotii_DSM_20548 0
Erysipelothrix_rhusiopathiae_str._Fujisawa 1
Clostridiales_genomosp._BVAB3_str._UPII9-5 0
Faecalibacterium_prausnitzii 0
Ruminococcus_albus_7 1
Thermincola_potens_JR 0
Desulfotomaculum_kuznetsovii_DSM_6115 0
Eubacterium_limosum_KIST612 0
Clostridium_difficile_630 0
Clostridium_saccharolyticum_WM1 0
Clostridium_phytofermentans_ISDg 0
[Ruminococcus]_obeum 1
Coprococcus_sp._ART55/1 0
Roseburia_intestinalis 0
Butyrivibrio_proteoclasticus_B316 0
Butyrivibrio_fibrisolvens 1
Clostridium_sp._BNL1100 0
Clostridium_perfringens_ATCC_13124 0
Clostridium_cellulovorans_743B 1
Clostridium_botulinum_A_str._ATCC_3502 1
Clostridium_acetobutylicum_ATCC_824 0
Mahella_australiensis_50-1_BON 0
Caldicellulosiruptor_obsidiansis_OB47 1
Caldicellulosiruptor_kronotskyensis_2002 2
Caldicellulosiruptor_hydrothermalis_108 0
Caldicellulosiruptor_lactoaceticus_6A 0
Caldicellulosiruptor_bescii_DSM_6725 1
Thermoanaerobacter_wiegelii_Rt8.B1 0
Halanaerobium_praevalens_DSM_2228 1
Melissococcus_plutonius_DAT561 0
Streptococcus_intermedius_JTH08 1
Streptococcus_equi_subsp._equi_4047 0
Streptococcus_mitis_B6 0
Streptococcus_pneumoniae_P1031 2
Streptococcus_suis_P1/7 0
Streptococcus_oralis_Uo5 0
Alicyclobacillus_acidocaldarius_subsp._acidocaldarius_DSM_446 0
Brevibacillus_brevis_NBRC_100599 3
Paenibacillus_sp._JDR-2 0
Paenibacillus_mucilaginosus_3016 0
Listeria_welshimeri_serovar_6b_str._SLCC5334 0
Listeria_innocua_Clip11262 0
Listeria_monocytogenes_serotype_4b_str._CLIP_80459 0
Geobacillus_thermoglucosidasius_C56-YS93 1
Anoxybacillus_flavithermus_WK1 0
Geobacillus_kaustophilus_HTA426 0
Geobacillus_sp._GHH01 0
Bacillus_sp._JS 1
Bacillus_atrophaeus_1942 1
Bacillus_subtilis_subsp._subtilis_str._168 1
Bacillus_halodurans_C-125 1
Bacillus_weihenstephanensis_KBAB4 1
Bacillus_anthracis_str._A0248 2
Bacillus_clausii_KSM-K16 1
Bacillus_cellulosilyticus_DSM_2522 0
Bacillus_pumilus_SAFR-032 1
Staphylococcus_pseudintermedius_HKU10-03 1
Candidatus_Cloacamonas_acidaminovorans 2
Melioribacter_roseus_P3M 0
Ignavibacterium_album_JCM_16511 0
Chlorobium_luteolum_DSM_273 0
Chlorobium_limicola_DSM_245 1
Haliscomenobacter_hydrossis_DSM_1100 2
Saprospira_grandis_str._Lewin 0
Niastella_koreensis_GR20-10 2
Chitinophaga_pinensis_DSM_2588 0
Rhodothermus_marinus_DSM_4252 1
Cyclobacterium_marinum_DSM_745 1
Marivirga_tractuosa_DSM_4126 0
Fibrella_aestuarina 1
Leadbetterella_byssophila_DSM_17132 2
Dyadobacter_fermentans_DSM_18053 1
Cytophaga_hutchinsonii_ATCC_33406 2
Spirosoma_linguale_DSM_74 1
Runella_slithyformis_DSM_19594 2
Parabacteroides_distasonis_ATCC_8503 0
Paludibacter_propionicigenes_WB4 0
Prevotella_intermedia_17 0
Prevotella_ruminicola_23 1
Alistipes_finegoldii_DSM_17242 0
Bacteroides_helcogenes_P_36-108 1
Bacteroides_vulgatus_ATCC_8482 1
Bacteroides_thetaiotaomicron_VPI-5482 2
Bacteroides_fragilis_YCH46 1
Pedobacter_saltans_DSM_12145 0
Pedobacter_heparinus_DSM_2366 1
Sphingobacterium_sp._21 0
Fluviicola_taffensis_DSM_16823 0
Owenweeksia_hongkongensis_DSM_17368 0
Zunongwangia_profunda_SM-A87 0
Lacinutrix_sp._5H-3-7-4 0
Maribacter_sp._HTCC2170 0
Robiginitalea_biformata_HTCC2501 0
Croceibacter_atlanticus_HTCC2559 0
Aequorivita_sublithincola_DSM_14238 1
Zobellia_galactanivorans 4
Cellulophaga_algicola_DSM_14237 0
Cellulophaga_lytica_DSM_7489 1
Polaribacter_sp._MED152 0
Ornithobacterium_rhinotracheale_DSM_15997 1
Capnocytophaga_canimorsus_Cc5 1
Capnocytophaga_ochracea_DSM_7271 1
Flavobacterium_indicum_GPTSA100-9 0
Flavobacterium_branchiophilum_FL-15 1
Flavobacterium_columnare_ATCC_49512 1
Flavobacterium_johnsoniae_UW101 1
Fibrobacter_succinogenes_subsp._succinogenes_S85 0
Waddlia_chondrophila_WSU_86-1044 1
Planctomyces_brasiliensis_DSM_5305 1
Planctomyces_limnophilus_DSM_3776 0
Rhodopirellula_baltica_SH_1 0
Pirellula_staleyi_DSM_6068 0
Coraliomargarita_akajimensis_DSM_45221 1
Opitutus_terrae_PB90-1 1
Turneriella_parva_DSM_21527 2
Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._L550 1
Leptospira_interrogans_serovar_Lai_str._IPAV 1
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Paris)' 3
Spirochaeta_caldaria_DSM_7334 0
Treponema_azotonutricium_ZAS-9 0
Spirochaeta_thermophila_DSM_6192 1
Desulfurispirillum_indicum_S5 0
Deferribacter_desulfuricans_SSM1 0
Thermotoga_sp._RQ2 1
Thermotoga_petrophila_RKU-1 1
Thermotoga_maritima_MSB8 1
Candidatus_Solibacter_usitatus_Ellin6076 3
Granulicella_tundricola_MP5ACTX9 0
Granulicella_mallensis_MP5ACTX8 0
Candidatus_Koribacter_versatilis_Ellin345 0
Terriglobus_saanensis_SP1PR4 0
Terriglobus_roseus_DSM_18391 0
Acidobacterium_capsulatum_ATCC_51196 1
Candidatus_Saccharimonas_aalborgensis 1
Bdellovibrio_bacteriovorus_HD100 1
Nitratifractor_salsuginis_DSM_16511 1
Desulfarculus_baarsii_DSM_2075 2
Desulfatibacillum_alkenivorans_AK-01 1
Desulfococcus_oleovorans_Hxd3 1
Desulfomicrobium_baculatum_DSM_4028 0
Desulfovibrio_aespoeensis_Aspo-2 0
Desulfovibrio_alaskensis_G20 0
Desulfovibrio_salexigens_DSM_2638 1
Desulfovibrio_africanus_str._Walvis_Bay 1
Geobacter_daltonii_FRC-32 0
Geobacter_lovleyi_SZ 1
Geobacter_sulfurreducens_KN400 1
Haliangium_ochraceum_DSM_14365 0
Sorangium_cellulosum_'So_ce_56' 1
Anaeromyxobacter_sp._Fw109-5 1
Stigmatella_aurantiaca_DW4/3-1 0
Corallococcus_coralloides_DSM_2259 0
Myxococcus_xanthus_DK_1622 0
Myxococcus_fulvus_HW-1 0
Chromobacterium_violaceum_ATCC_12472 1
Burkholderia_phytofirmans_PsJN 0
Burkholderia_gladioli_BSR3 0
Burkholderia_glumae_BGR1 0
Delftia_acidovorans_SPH-1 0
Acidovorax_avenae_subsp._avenae_ATCC_19860 0
Asticcacaulis_excentricus_CB_48 0
Caulobacter_crescentus_NA1000 0
Caulobacter_segnis_ATCC_21756 0
Novosphingobium_aromaticivorans_DSM_12444 0
Zymomonas_mobilis_subsp._mobilis_NCIMB_11163 1
Pseudovibrio_sp._FO-BEG1 0
Azospirillum_brasilense_Sp245 1
Methylobacterium_sp._4-46 1
Methylobacterium_populi_BJ001 1
Methylocella_silvestris_BL2 1
Nitrobacter_hamburgensis_X14 1
Saccharophagus_degradans_2-40 3
Teredinibacter_turnerae_T7901 0
Cellvibrio_japonicus_Ueda107 0
Aeromonas_hydrophila_subsp._hydrophila_ATCC_7966 0
Psychromonas_ingrahamii_37 1
Pseudoalteromonas_atlantica_T6c 1
Glaciecola_sp._4H-3-7+YE-5 0
Hahella_chejuensis_KCTC_2396 1
Stenotrophomonas_maltophilia_K279a 1
Xylella_fastidiosa_M23 0
Xanthomonas_axonopodis_pv._citri_str._306 0
Xanthomonas_albilineans_GPE_PC73 0
Xanthomonas_oryzae_pv._oryzae_PXO99A 0
Xanthomonas_campestris_pv._campestris_str._B100 0
Allochromatium_vinosum_DSM_180 0
gamma_proteobacterium_HdN1 0
Xenorhabdus_nematophila_ATCC_19061 0
Serratia_proteamaculans_568 0
Dickeya_zeae_Ech1591 2
Pectobacterium_atrosepticum_SCRI1043 2
Pectobacterium_carotovorum_subsp._carotovorum_PC1 3
Pseudomonas_entomophila_L48 1
Methanosphaerula_palustris_E1-9c 0
Thermococcus_kodakarensis_KOD1 1
Halopiger_xanaduensis_SH-6 0
Haloterrigena_turkmenica_DSM_5511 0
Haloferax_mediterranei_ATCC_33500 0
Haloarcula_hispanica_ATCC_33960 0
Haloarcula_marismortui_ATCC_43049 1
Halalkalicoccus_jeotgali_B3 1

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   2
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   4
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   1
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   1
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   1
Paracoccidioides_brasiliensis_Pb01_ 3
Paracoccidioides_brasiliensis_Pb03_ 2
Coccidioides_posadasii_str._Silveira_ 2
Coccidioides_immitis_RMSCC_3703_ 2
Coccidioides_immitis_RMSCC_2394_ 2
Coccidioides_immitis_H538.4_ 2
Ajellomyces_dermatitidis_ER-3_ 3
Histoplasma_capsulatum_H88 2
Histoplasma_capsulatum_G186AR 1
Aspergillus_fumigatus_A1163_ 2
Candida_albicans_WO-1_ 1
Saccharomyces_cerevisiae_CBS7960 1
Saccharomyces_cerevisiae_YJM269 1
Saccharomyces_cerevisiae_T7 1
Saccharomyces_cerevisiae_FostersB 1
Saccharomyces_cerevisiae_Vin13 1
Saccharomyces_cerevisiae_Sigma1278b 1
Saccharomyces_cerevisiae_W303 1
Saccharomyces_cerevisiae_JAY291 1
Saccharomyces_cerevisiae_AWRI1631 1
Saccharomyces_cerevisiae_CLIB215 1
Saccharomyces_cerevisiae_Y10 1
Saccharomyces_cerevisiae_YJM789_ 1
Saccharomyces_cerevisiae_YJM789 1
Saccharomyces_cerevisiae_RM11-1a 1
Saccharomyces_cerevisiae_RM11-1a_ 1
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   1
Batrachochytrium_dendrobatidis_JEL423_ 1
Batrachochytrium_dendrobatidis_JAM81_ 1
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   3
Hordeum_vulgare_22   (Domesticated barley)   7
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   3
Trypanosoma_brucei_Lister_427_v4.1 1
Neospora_caninum_Nc-Liverpool_6.2 2
Plasmodium_falciparum_HB3_ 1
Plasmodium_falciparum_Dd2_ 0
Chroococcidiopsis_thermalis_PCC_7203 1
Dactylococcopsis_salina_PCC_8305 1
Synechococcus_sp._JA-2-3B'a(2-13) 1
Synechococcus_sp._JA-3-3Ab 1
Synechococcus_sp._PCC_7002 1
Cyanobacterium_stanieri_PCC_7202 1
Mycoplasma_cynos_C142 1
Frankia_sp._CcI3 2
Nocardiopsis_alba_ATCC_BAA-2165 0
Streptomyces_rapamycinicus_NRRL_5491 1
Streptomyces_davawensis_JCM_4913 1
Streptomyces_fulvissimus_DSM_40593 1
Streptomyces_collinus_Tu_365 0
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 0
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 0
Saccharothrix_espanaensis_DSM_44229 0
Amycolatopsis_mediterranei_RB 1
Amycolatopsis_mediterranei_S699 1
Amycolatopsis_mediterranei_S699 1
Amycolatopsis_orientalis_HCCB10007 0
Propionibacterium_acnes_ATCC_11828 1
Propionibacterium_acnes_TypeIA2_P.acn31 1
Propionibacterium_acnes_TypeIA2_P.acn17 1
Propionibacterium_acnes_TypeIA2_P.acn33 1
Propionibacterium_acnes_6609 1
Propionibacterium_acnes_KPA171202 1
Actinoplanes_friuliensis_DSM_7358 0
Rhodococcus_pyridinivorans_SB3094 0
Rhodococcus_erythropolis_CCM2595 0
Nocardia_brasiliensis_ATCC_700358 0
Mycobacterium_sp._MOTT36Y 0
Mycobacterium_sp._JDM601 0
Mycobacterium_abscessus_subsp._bolletii_50594 1
Mycobacterium_liflandii_128FXT 0
Mycobacterium_sp._KMS 0
Mycobacterium_sp._MCS 0
Mycobacterium_yongonense_05-1390 0
Mycobacterium_intracellulare_MOTT-64 0
Mycobacterium_indicus_pranii_MTCC_9506 0
Mycobacterium_intracellulare_MOTT-02 0
Mycobacterium_avium_subsp._paratuberculosis_MAP4 0
Mycobacterium_avium_subsp._paratuberculosis_K-10 0
Mycobacterium_canettii_CIPT_140070017 0
Mycobacterium_canettii_CIPT_140060008 0
Mycobacterium_canettii_CIPT_140070008 0
Mycobacterium_canettii_CIPT_140070010 0
Mycobacterium_tuberculosis_EAI5/NITR206 0
Mycobacterium_tuberculosis_EAI5 0
Mycobacterium_tuberculosis_CAS/NITR204 1
Mycobacterium_tuberculosis_str._Beijing/NITR203 0
Mycobacterium_tuberculosis_UT205 0
Mycobacterium_tuberculosis_CTRI-2 0
Mycobacterium_tuberculosis_str._Erdman_=_ATCC_35801 0
Mycobacterium_tuberculosis_KZN_605 0
Mycobacterium_tuberculosis_KZN_4207 0
Mycobacterium_tuberculosis_CCDC5180 0
Mycobacterium_tuberculosis_CCDC5079 0
Mycobacterium_tuberculosis_CCDC5079 0
Mycobacterium_tuberculosis_H37Ra 0
Mycobacterium_tuberculosis_str._Haarlem 0
Mycobacterium_tuberculosis_F11 0
Mycobacterium_tuberculosis_H37Rv 0
Mycobacterium_tuberculosis_CDC1551 0
Mycobacterium_bovis_AF2122/97 0
Mycobacterium_bovis_BCG_str._Korea_1168P 0
Mycobacterium_bovis_BCG_str._Mexico 0
Mycobacterium_bovis_BCG_str._Tokyo_172 0
Mycobacterium_gilvum_Spyr1 0
Mycobacterium_smegmatis_str._MC2_155 0
Mycobacterium_leprae_TN 0
Mycobacterium_kansasii_ATCC_12478 0
Corynebacterium_terpenotabidum_Y-11 1
Corynebacterium_urealyticum_DSM_7111 1
Gardnerella_vaginalis_HMP9231 1
Bifidobacterium_longum_NCC2705 0
Bifidobacterium_longum_DJO10A 1
Bifidobacterium_longum_subsp._infantis_157F 0
Bifidobacterium_longum_subsp._longum_KACC_91563 0
Bifidobacterium_longum_subsp._longum_BBMN68 0
Bifidobacterium_longum_subsp._longum_F8 1
Bifidobacterium_longum_subsp._longum_JCM_1217 0
Bifidobacterium_animalis_subsp._lactis_Bl12 1
Bifidobacterium_animalis_subsp._lactis_B420 1
Bifidobacterium_animalis_subsp._lactis_ATCC_27673 1
Bifidobacterium_animalis_subsp._lactis_BLC1 1
Bifidobacterium_animalis_subsp._lactis_CNCM_I-2494 1
Bifidobacterium_animalis_subsp._lactis_Bi-07 1
Bifidobacterium_animalis_subsp._lactis_V9 1
Bifidobacterium_animalis_subsp._lactis_DSM_10140 1
Bifidobacterium_animalis_subsp._lactis_BB-12 1
Bifidobacterium_bifidum_PRL2010 0
Bifidobacterium_bifidum_BGN4 0
Actinomyces_graevenitzii_C83_ 0
Dehalococcoides_mccartyi_GY50 1
Dehalococcoides_mccartyi_BTF08 1
Dehalococcoides_sp._GT 1
Dehalococcoides_sp._CBDB1 1
Chthonomonas_calidirosea_T49 1
Deinococcus_peraridilitoris_DSM_19664 1
Erysipelothrix_rhusiopathiae_SY1027 1
Ruminococcus_champanellensis_18P13 0
Clostridium_acidurici_9a 0
Clostridium_difficile_BI1 0
Clostridium_difficile_R20291 0
Clostridium_difficile_CD196 0
Coprococcus_catus_GD/7 2
Roseburia_intestinalis_XB6B4 0
Clostridium_saccharobutylicum_DSM_13864 0
Clostridium_saccharoperbutylacetonicum_N1-4(HMT) 2
Clostridium_perfringens_SM101 0
Clostridium_perfringens_str._13 0
Clostridium_botulinum_BKT015925 0
Clostridium_botulinum_F_str._230613 1
Clostridium_botulinum_F_str._Langeland 1
Clostridium_botulinum_E3_str._Alaska_E43 0
Clostridium_botulinum_A_str._Hall 1
Clostridium_botulinum_A_str._ATCC_19397 1
Clostridium_acetobutylicum_DSM_1731 1
Clostridium_acetobutylicum_EA_2018 1
Thermacetogenium_phaeum_DSM_12270 1
Enterococcus_faecium_NRRL_B-2354 2
Lactobacillus_paracasei_subsp._paracasei_8700:2 0
Lactobacillus_plantarum_subsp._plantarum_ST-III 1
Streptococcus_constellatus_subsp._pharyngis_C1050 0
Streptococcus_constellatus_subsp._pharyngis_C818 0
Streptococcus_constellatus_subsp._pharyngis_C232 0
Streptococcus_intermedius_B196 1
Streptococcus_intermedius_C270 1
Streptococcus_equi_subsp._zooepidemicus_ATCC_35246 0
Streptococcus_equi_subsp._zooepidemicus_MGCS10565 0
Streptococcus_equi_subsp._zooepidemicus 0
Streptococcus_pneumoniae_A026 1
Streptococcus_pneumoniae_ST556 2
Streptococcus_pneumoniae_SPNA45 1
Streptococcus_pneumoniae_SPN994039 2
Streptococcus_pneumoniae_SPN994038 2
Streptococcus_pneumoniae_SPN034183 2
Streptococcus_pneumoniae_SPN034156 1
Streptococcus_pneumoniae_INV104 1
Streptococcus_pneumoniae_INV200 1
Streptococcus_pneumoniae_OXC141 2
Streptococcus_pneumoniae_gamPNI0373 2
Streptococcus_pneumoniae_AP200 2
Streptococcus_pneumoniae_ATCC_700669 1
Streptococcus_pneumoniae_TCH8431/19A 1
Streptococcus_pneumoniae_CGSP14 1
Streptococcus_pneumoniae_G54 1
Streptococcus_pneumoniae_JJA 1
Streptococcus_pneumoniae_70585 1
Streptococcus_pneumoniae_Hungary19A-6 3
Streptococcus_pneumoniae_Taiwan19F-14 1
Streptococcus_pneumoniae_D39 1
Streptococcus_pneumoniae_670-6B 2
Streptococcus_pneumoniae_R6 1
Streptococcus_pneumoniae_TIGR4 1
Streptococcus_suis_T15 0
Streptococcus_suis_SC070731 0
Streptococcus_suis_S735 0
Streptococcus_suis_ST3 0
Streptococcus_suis_D9 0
Streptococcus_suis_SS12 0
Streptococcus_suis_ST1 0
Streptococcus_suis_A7 0
Streptococcus_suis_JS14 0
Streptococcus_suis_BM407 0
Streptococcus_suis_SC84 0
Streptococcus_suis_GZ1 0
Streptococcus_suis_98HAH33 1
Streptococcus_suis_05ZYH33 0
Paenibacillus_sp._Y412MC10 0
Paenibacillus_mucilaginosus_KNP414 0
Paenibacillus_mucilaginosus_K02 0
Paenibacillus_larvae_subsp._larvae_DSM_25430 1
Paenibacillus_polymyxa_CR1 0
Listeria_monocytogenes_serotype_4b_str._LL195 0
Listeria_monocytogenes_07PF0776 0
Listeria_monocytogenes_M7 0
Listeria_monocytogenes_J1-220 0
Listeria_monocytogenes_J1816 0
Listeria_monocytogenes_SLCC2376 0
Listeria_monocytogenes_ATCC_19117 0
Listeria_monocytogenes_L312 0
Listeria_monocytogenes_SLCC2378 0
Listeria_monocytogenes_L99 0
Listeria_monocytogenes_HCC23 0
Listeria_monocytogenes_serotype_4b_str._F2365 0
Bacillus_amyloliquefaciens_subsp._plantarum_sequencing 1
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5033 1
Bacillus_amyloliquefaciens_subsp._plantarum_AS43.3 1
Bacillus_amyloliquefaciens_subsp._plantarum_YAU_B9601-Y2 1
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5036 1
Bacillus_amyloliquefaciens_subsp._plantarum_CAU_B946 1
Bacillus_amyloliquefaciens_Y2 1
Bacillus_subtilis_PY79 1
Bacillus_subtilis_XF-1 1
Bacillus_subtilis_QB928 1
Bacillus_subtilis_BSn5 1
Bacillus_subtilis_subsp._subtilis_str._BAB-1 1
Bacillus_subtilis_subsp._subtilis_str._RO-NN-1 1
Bacillus_subtilis_subsp._subtilis_6051-HGW 1
Bacillus_subtilis_subsp._spizizenii_TU-B-10 1
Bacillus_subtilis_subsp._spizizenii_str._W23 1
Bacillus_subtilis_subsp._natto_BEST195 1
Bacillus_thuringiensis_HD-789 2
Bacillus_thuringiensis_MC28 2
Bacillus_thuringiensis_serovar_chinensis_CT-43 1
Bacillus_thuringiensis_YBT-1518 0
Bacillus_thuringiensis_BMB171 1
Bacillus_thuringiensis_serovar_thuringiensis_str._IS5056 1
Bacillus_cereus_B4264 3
Bacillus_cereus_G9842 4
Bacillus_cereus_Q1 1
Bacillus_cereus_ATCC_10987 1
Bacillus_anthracis_str._H9401 2
Bacillus_anthracis_str._CDC_684 2
Bacillus_anthracis_str._'Ames_Ancestor' 2
Bacillus_anthracis_str._Sterne 2
Bacillus_anthracis_str._Ames 1
Staphylococcus_pseudintermedius_ED99 1
Rhodothermus_marinus_SG0.5JP17-172 1
Echinicola_vietnamensis_DSM_17526 0
Emticicia_oligotrophica_DSM_17448 0
Prevotella_sp._oral_taxon_299_str._F0039 1
Prevotella_dentalis_DSM_3688 1
Bacteroides_xylanisolvens_XB1A 1
Bacteroides_fragilis_638R 1
Bacteroides_fragilis_NCTC_9343 1
Nonlabens_dokdonensis_DSW-6 0
Psychroflexus_torquis_ATCC_700755 1
Fibrobacter_succinogenes_subsp._succinogenes_S85 0
Singulisphaera_acidiphila_DSM_18658 0
Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._JB197 1
Leptospira_interrogans_serovar_Lai_str._56601 1
Leptospira_interrogans_serovar_Copenhageni_str._Fiocruz_L1-130 1
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Ames)' 3
Spirochaeta_thermophila_DSM_6578 1
Thermotoga_maritima_MSB8 1
Geobacter_sulfurreducens_PCA 1
Sorangium_cellulosum_So0157-2 0
Myxococcus_stipitatus_DSM_14675 1
Variovorax_paradoxus_EPS 0
Caulobacter_crescentus_CB15 0
Zymomonas_mobilis_subsp._mobilis_CP4 1
Zymomonas_mobilis_subsp._mobilis_ATCC_10988 1
Zymomonas_mobilis_subsp._mobilis_ZM4 1
Rhizobium_tropici_CIAT_899 0
Hyphomicrobium_denitrificans_1NES1 0
Rhodopseudomonas_palustris_DX-1 0
Mannheimia_haemolytica_USMARC_2286 2
Mannheimia_haemolytica_M42548 2
Mannheimia_haemolytica_D153 2
Mannheimia_haemolytica_USDA-ARS-USMARC-183 2
Mannheimia_haemolytica_USDA-ARS-USMARC-185 1
Aeromonas_hydrophila_ML09-119 0
Glaciecola_psychrophila_170 1
Stenotrophomonas_maltophilia_D457 1
Stenotrophomonas_maltophilia_JV3 1
Stenotrophomonas_maltophilia_R551-3 1
Xylella_fastidiosa_subsp._fastidiosa_GB514 0
Xylella_fastidiosa_M12 0
Xylella_fastidiosa_Temecula1 0
Xylella_fastidiosa_9a5c 0
Xanthomonas_citri_subsp._citri_Aw12879 0
Xanthomonas_campestris_pv._vesicatoria_str._85-10 0
Xanthomonas_axonopodis_pv._citrumelo_F1 0
Xanthomonas_axonopodis_Xac29-1 0
Xanthomonas_oryzae_pv._oryzicola_BLS256 0
Xanthomonas_oryzae_pv._oryzae_MAFF_311018 0
Xanthomonas_oryzae_pv._oryzae_KACC_10331 0
Xanthomonas_campestris_pv._campestris_str._8004 0
Xanthomonas_campestris_pv._campestris_str._ATCC_33913 0
Dickeya_dadantii_Ech586 1
Dickeya_dadantii_3937 1
Pectobacterium_carotovorum_subsp._carotovorum_PCC21 5
Klebsiella_oxytoca_KCTC_1686 0
Klebsiella_pneumoniae_KCTC_2242 1
Klebsiella_pneumoniae_342 1
Klebsiella_pneumoniae_subsp._pneumoniae_1084 0
Klebsiella_pneumoniae_subsp._pneumoniae_HS11286 1
Klebsiella_pneumoniae_subsp._rhinoscleromatis_SB3432 0
Enterobacter_aerogenes_EA1509E 0
Pseudomonas_denitrificans_ATCC_13867 0
Pseudomonas_monteilii_SB3101 0
Pseudomonas_monteilii_SB3078 0
Pseudomonas_putida_H8234 0
Pseudomonas_fluorescens_Pf0-1 1
Aeropyrum_camini_SY1_=_JCM_12091 1
Haloarcula_hispanica_N601 0

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   1
Pan_troglodytes_69_2.1.4   (Chimpanzee)   1
Gorilla_gorilla_69_3.1   (Western gorilla)   1
Pongo_abelii_69_2   (Sumatran orangutan)   1
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   1
Macaca_mulatta_69_1   (Rhesus monkey)   1
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   1
Otolemur_garnettii_69_3   (Small-eared galago)   1
Microcebus_murinus_69_1   (Gray mouse lemur)   2
Rattus_norvegicus_69_3.4   (Norway rat)   1
Mus_musculus_69_38   (House mouse)   3
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   1
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   3
Cavia_porcellus_69_3   (Domestic guinea pig)   1
Oryctolagus_cuniculus_69_2   (Rabbit)   1
Ochotona_princeps_69   (American pika)   1
Tupaia_belangeri_69   (Northern tree shrew)   2
Sus_scrofa_69_10.2   (Pig)   4
Bos_taurus_69_3.1   (Cattle)   1
Vicugna_pacos_69_1   (Alpaca)   1
Tursiops_truncatus_69_1   (Bottlenose dolphin)   1
Mustela_putorius_furo_69_1.0   (Domestic ferret)   3
Ailuropoda_melanoleuca_69_1   (Giant panda)   2
Canis_familiaris_69_3.1   (Dog)   1
Felis_catus_69   (Domestic cat)   1
Equus_caballus_69_2   (Horse)   1
Myotis_lucifugus_69_2.0   (Little brown bat)   1
Pteropus_vampyrus_69_1   (Large flying fox)   0
Sorex_araneus_69_1   (European shrew)   1
Erinaceus_europaeus_69   (Western European hedgehog)   1
Procavia_capensis_69_1   (Cape rock hyrax)   1
Loxodonta_africana_69_3   (African savanna elephant)   0
Echinops_telfairi_69   (Small Madagascar hedgehog)   0
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   0
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   1
Macropus_eugenii_69_1.0   (Tammar wallaby)   0
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   1
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   2
Ornithorhynchus_anatinus_69_5   (Platypus)   2
Petromyzon_marinus_69_7.0   (Sea lamprey)   0
Meleagris_gallopavo_69_2   (Turkey)   1
Gallus_gallus_69_2   (Chicken)   1
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   1
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   1
Anolis_carolinensis_69_2.0   (Green anole)   1
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   1
Latimeria_chalumnae_69_1   (Coelacanth)   1
Gadus_morhua_69_1   (Atlantic cod)   0
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   0
Takifugu_rubripes_69_4   (Torafugu)   0
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   0
Oryzias_latipes_69_1   (Japanese medaka)   0
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   0
Oreochromis_niloticus_69_1.0   (Nile tilapia)   0
Danio_rerio_69_9   (Zebrafish)   0
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   0
Ciona_intestinalis_69   (Vase tunicate)   0
Drosophila_melanogaster_69_5   (Fruit fly)   2
Caenorhabditis_elegans_69_215   (Roundworm)   1
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   1
Arabidopsis_thaliana_10   (Thale cress)   5

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   5
Homo_sapiens__(NCBI_version)   (Human)   2
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   3
Loa_loa_v3.3_(Request)   (Eye worm)   0
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   1
Lotus_japonicus__(Early_assembly) 3
Malus_x_domestica_(Duplicate)   (Apple)   9
Ricinus_communis__(Early_assembly)   (Castor bean)   3
Nicotiana_benthamiana_0.4.4_(Early_draft) 4
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   1
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   1
Phoenix_dactylifera__(Early_draft)   (Date palm)   3
Mycobacterium_tuberculosis_H37Rv_(Duplicate_of_ex) 0
NCBI_plasmid_sequences_(Plasmids) 19
NCBI_2017_08_genome 18166
Protein_Data_Bank_(all_PDB_sequenc) 12
UniProt__viral_sequences_(Viral) 21
PDB_chains_(SCOP_1.75)_(PDB) 0
TargetDB__(Targets) 8
Protozoadb_2010_08_(Protozoadb) 22
NCBI_viral_sequences_(Viral) 33
STRING_v9.0.5_(STRING) 328
Uniprot_2018_03_genome 33640

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.