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  Home > SCOP hierarchy > Domain combination - _gap_,49842

Domain combinations for _gap_,49842 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

49842 - TNF-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   127
Pan_troglodytes_76_2.1.4   (Chimpanzee)   48
Gorilla_gorilla_76_3.1   (Western gorilla)   57
Pongo_abelii_76_2   (Sumatran orangutan)   38
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   39
Papio_anubis_76   (Olive baboon)   45
Macaca_mulatta_76_1   (Rhesus monkey)   59
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   83
Otolemur_garnettii_76_3   (Small-eared galago)   47
Microcebus_murinus_76_1   (Gray mouse lemur)   35
Rattus_norvegicus_76_5.0   (Norway rat)   49
Mus_musculus_76_38   (House mouse)   75
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   32
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   44
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   39
Cavia_porcellus_76_3   (Domestic guinea pig)   38
Oryctolagus_cuniculus_76_2   (Rabbit)   47
Ochotona_princeps_76   (American pika)   32
Tupaia_belangeri_76   (Northern tree shrew)   32
Sus_scrofa_76_10.2   (Pig)   50
Bos_taurus_76_3.1   (Cattle)   52
Ovis_aries_76_3.1   (Sheep)   49
Vicugna_pacos_76_1   (Alpaca)   18
Tursiops_truncatus_76_1   (Bottlenose dolphin)   40
Mustela_putorius_furo_76_1.0   (Domestic ferret)   46
Ailuropoda_melanoleuca_76_1   (Giant panda)   51
Canis_familiaris_76_3.1   (Dog)   47
Felis_catus_76_6.2   (Domestic cat)   42
Equus_caballus_76_2   (Horse)   44
Myotis_lucifugus_76_2.0   (Little brown bat)   42
Pteropus_vampyrus_76_1   (Large flying fox)   41
Sorex_araneus_76_1   (European shrew)   18
Erinaceus_europaeus_76   (Western European hedgehog)   23
Procavia_capensis_76_1   (Cape rock hyrax)   33
Loxodonta_africana_76_3   (African savanna elephant)   51
Echinops_telfairi_76   (Small Madagascar hedgehog)   29
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   52
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   15
Macropus_eugenii_76_1.0   (Tammar wallaby)   32
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   45
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   44
Ornithorhynchus_anatinus_76_5   (Platypus)   33
Saccoglossus_kowalevskii_v3.0 32
Petromyzon_marinus_76_7.0   (Sea lamprey)   18
Meleagris_gallopavo_76_2   (Turkey)   30
Gallus_gallus_76_4   (Chicken)   32
Anas_platyrhynchos_76_1.0   (Mallard)   27
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   33
Ficedula_albicollis_76_1.0   (Collared flycatcher)   36
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   36
Anolis_carolinensis_76_2.0   (Green anole)   36
Xenopus_laevis_   (African clawed frog)   34
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   38
Latimeria_chalumnae_76_1   (Coelacanth)   46
Lepisosteus_oculatus_76   (Spotted gar)   52
Gadus_morhua_76_1   (Atlantic cod)   47
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   55
Takifugu_rubripes_76_4   (Torafugu)   81
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   51
Oryzias_latipes_76_1   (Japanese medaka)   56
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   66
Poecilia_formosa_76   (Amazon molly)   68
Oreochromis_niloticus_76_1.0   (Nile tilapia)   93
Astyanax_mexicanus_76   (Mexican tetra)   69
Danio_rerio_76_9   (Zebrafish)   100
Oikopleura_dioica 6
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   7
Ciona_intestinalis_76   (Vase tunicate)   9
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   13
Adineta_vaga 11
Octopus_bimaculoides_280 8
Crassostrea_gigas_22   (Pacific oyster)   166
Lottia_gigantea_   (Owl limpet)   5
Helobdella_robusta_ 8
Capitella_sp._I_ 20
Danaus_plexippus_OGS1.0   (Monarch butterfly)   2
Heliconius_melpomene_   (Postman butterfly)   2
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   2
Linepithema_humile_v1.1   (Argentine ant)   1
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   2
Solenopsis_invicta_v.2.2.3   (Red fire ant)   1
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   1
Atta_cephalotes_v1.1 2
Camponotus_floridanus_v3.3   (Florida carpenter ant)   2
Lucilia_cuprina   (Australian sheep blowfly)   1
Drosophila_grimshawi_1.3 1
Drosophila_willistoni_1.3 1
Drosophila_pseudoobscura_2.13 1
Drosophila_persimilis_1.3 1
Drosophila_suzukii 1
Drosophila_yakuba_1.3 1
Drosophila_simulans_1.3 1
Drosophila_sechellia_1.3 1
Drosophila_melanogaster_76_5   (Fruit fly)   2
Drosophila_erecta_1.3 1
Drosophila_ananassae_1.3 1
Drosophila_virilis_1.2 1
Drosophila_mojavensis_1.3 1
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   1
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   1
Anopheles_darlingi_22   (American malaria mosquito)   0
Anopheles_gambiae_49_3j   (African malaria mosquito)   1
Tribolium_castaneum_3.0   (Red flour beetle)   1
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   1
Acyrthosiphon_pisum_   (Pea aphid)   1
Rhodnius_prolixus_22 1
Daphnia_pulex_   (Common water flea)   100
Strigamia_maritima_22 2
Tetranychus_urticae_   (Two-spotted spider mite)   0
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   1
Caenorhabditis_brenneri_ 0
Caenorhabditis_elegans_76_235   (Roundworm)   0
Caenorhabditis_briggsae_2 0
Hymenolepis_microstoma_ 1
Echinococcus_multilocularis_ 2
Echinococcus_granulosus_ 2
Taenia_solium_   (Pork tapeworm)   1
Schistosoma_mansoni_ 2
Acropora_digitifera_v1.0 5
Nematostella_vectensis_1.0   (Starlet sea anemone)   3
Hydra_vulgaris 4
Trichoplax_adhaerens_ 1
Monosiga_brevicollis_ 2
Dictyostelium_discoideum 0
Cyanophora_paradoxa_ 3
Pythium_arrhenomanes_ATCC_12531_22 1
Phytophthora_sojae_1.1 2
Phytophthora_capsici_ 1
Symbiodinium_minutum_clade_B1_v1.2 0
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 1
Meiothermus_silvanus_DSM_9946 1
Ethanoligenens_harbinense_YUAN-3 1
Oscillibacter_valericigenes_Sjm18-20 1
Syntrophobotulus_glycolicus_DSM_8271 1
Desulfotomaculum_ruminis_DSM_2154 1
Clostridium_perfringens_ATCC_13124 1
Caldicellulosiruptor_hydrothermalis_108 1
Paenibacillus_polymyxa_M1 1
Lysinibacillus_sphaericus_C3-41 1
Bacillus_sp._JS 1
Bacillus_atrophaeus_1942 2
Bacillus_subtilis_subsp._subtilis_str._168 2
Bacillus_licheniformis_DSM_13_=_ATCC_14580 1
Bacillus_halodurans_C-125 1
Bacillus_weihenstephanensis_KBAB4 2
Bacillus_thuringiensis_str._Al_Hakam 4
Bacillus_cereus_03BB102 4
Bacillus_anthracis_str._A0248 3
Bacillus_pumilus_SAFR-032 1
Dyadobacter_fermentans_DSM_18053 1
Runella_slithyformis_DSM_19594 1
Solitalea_canadensis_DSM_3403 2
Owenweeksia_hongkongensis_DSM_17368 2
Zunongwangia_profunda_SM-A87 1
Krokinobacter_sp._4H-3-7-5 1
Lacinutrix_sp._5H-3-7-4 1
Zobellia_galactanivorans 1
Flavobacteriaceae_bacterium_3519-10 1
Flavobacterium_indicum_GPTSA100-9 3
Ketogulonicigenium_vulgare_Y25 1
Ketogulonigenium_vulgarum_WSH-001 1
Roseobacter_litoralis_Och_149 2
Roseobacter_denitrificans_OCh_114 1
Paracoccus_denitrificans_PD1222 1
Azospirillum_lipoferum_4B 1
Azospirillum_brasilense_Sp245 1
Xanthobacter_autotrophicus_Py2 0
Agrobacterium_sp._H13-3 1
Oligotropha_carboxidovorans_OM4 1
Nitrobacter_hamburgensis_X14 0
Pseudomonas_sp._TKP 1
Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421 1
Pseudomonas_entomophila_L48 0
Pseudomonas_protegens_Pf-5 1
Pseudomonas_fluorescens_SBW25 1

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   57
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   2
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   1
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   0
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 1
Clostridium_acidurici_9a 1
Desulfosporosinus_meridiei_DSM_13257 1
Clostridium_perfringens_SM101 1
Clostridium_perfringens_str._13 1
Paenibacillus_larvae_subsp._larvae_DSM_25430 1
Paenibacillus_polymyxa_CR1 1
Paenibacillus_polymyxa_SC2 1
Bacillus_amyloliquefaciens_XH7 1
Bacillus_amyloliquefaciens_LL3 1
Bacillus_amyloliquefaciens_TA208 1
Bacillus_subtilis_PY79 2
Bacillus_subtilis_XF-1 1
Bacillus_subtilis_QB928 1
Bacillus_subtilis_BSn5 3
Bacillus_subtilis_subsp._subtilis_str._BAB-1 1
Bacillus_subtilis_subsp._subtilis_str._BSP1 1
Bacillus_subtilis_subsp._subtilis_str._RO-NN-1 1
Bacillus_subtilis_subsp._subtilis_6051-HGW 2
Bacillus_subtilis_subsp._spizizenii_TU-B-10 3
Bacillus_subtilis_subsp._spizizenii_str._W23 1
Bacillus_subtilis_subsp._natto_BEST195 1
Bacillus_toyonensis_BCT-7112 1
Bacillus_thuringiensis_HD-771 2
Bacillus_thuringiensis_HD-789 2
Bacillus_thuringiensis_MC28 2
Bacillus_thuringiensis_serovar_chinensis_CT-43 1
Bacillus_thuringiensis_YBT-1518 2
Bacillus_thuringiensis_Bt407 2
Bacillus_thuringiensis_serovar_konkukian_str._97-27 4
Bacillus_thuringiensis_BMB171 6
Bacillus_thuringiensis_serovar_finitimus_YBT-020 2
Bacillus_thuringiensis_serovar_thuringiensis_str._IS5056 3
Bacillus_cereus_FRI-35 1
Bacillus_cereus_biovar_anthracis_str._CI 3
Bacillus_cereus_AH820 3
Bacillus_cereus_AH187 2
Bacillus_cereus_B4264 2
Bacillus_cereus_G9842 1
Bacillus_cereus_Q1 2
Bacillus_cereus_F837/76 3
Bacillus_cereus_NC7401 2
Bacillus_cereus_E33L 4
Bacillus_cereus_ATCC_14579 5
Bacillus_cereus_ATCC_10987 3
Bacillus_anthracis_str._H9401 3
Bacillus_anthracis_str._CDC_684 4
Bacillus_anthracis_str._'Ames_Ancestor' 4
Bacillus_anthracis_str._Sterne 4
Bacillus_anthracis_str._Ames 4
Bacillus_megaterium_WSH-002 2
Bacillus_megaterium_QM_B1551 2
Nonlabens_dokdonensis_DSW-6 1
Leisingera_methylohalidivorans_DSM_14336 1
Oligotropha_carboxidovorans_OM5 1
Oligotropha_carboxidovorans_OM5 1
Pseudomonas_monteilii_SB3101 1
Pseudomonas_monteilii_SB3078 1
Pseudomonas_putida_S16 1
Pseudomonas_protegens_CHA0 1
Pseudomonas_poae_RE*1-1-14 1
Pseudomonas_fluorescens_F113 1
Pseudomonas_fluorescens_A506 1
Pseudomonas_fluorescens_Pf0-1 2

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   67
Pan_troglodytes_69_2.1.4   (Chimpanzee)   46
Gorilla_gorilla_69_3.1   (Western gorilla)   42
Pongo_abelii_69_2   (Sumatran orangutan)   37
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   37
Macaca_mulatta_69_1   (Rhesus monkey)   41
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   44
Otolemur_garnettii_69_3   (Small-eared galago)   47
Microcebus_murinus_69_1   (Gray mouse lemur)   35
Rattus_norvegicus_69_3.4   (Norway rat)   39
Mus_musculus_69_38   (House mouse)   46
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   32
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   44
Cavia_porcellus_69_3   (Domestic guinea pig)   38
Oryctolagus_cuniculus_69_2   (Rabbit)   42
Ochotona_princeps_69   (American pika)   32
Tupaia_belangeri_69   (Northern tree shrew)   32
Sus_scrofa_69_10.2   (Pig)   43
Bos_taurus_69_3.1   (Cattle)   49
Vicugna_pacos_69_1   (Alpaca)   18
Tursiops_truncatus_69_1   (Bottlenose dolphin)   40
Mustela_putorius_furo_69_1.0   (Domestic ferret)   45
Ailuropoda_melanoleuca_69_1   (Giant panda)   43
Canis_familiaris_69_3.1   (Dog)   40
Felis_catus_69   (Domestic cat)   29
Equus_caballus_69_2   (Horse)   43
Myotis_lucifugus_69_2.0   (Little brown bat)   42
Pteropus_vampyrus_69_1   (Large flying fox)   41
Sorex_araneus_69_1   (European shrew)   18
Erinaceus_europaeus_69   (Western European hedgehog)   23
Procavia_capensis_69_1   (Cape rock hyrax)   33
Loxodonta_africana_69_3   (African savanna elephant)   43
Echinops_telfairi_69   (Small Madagascar hedgehog)   29
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   23
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   15
Macropus_eugenii_69_1.0   (Tammar wallaby)   32
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   38
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   43
Ornithorhynchus_anatinus_69_5   (Platypus)   29
Petromyzon_marinus_69_7.0   (Sea lamprey)   18
Meleagris_gallopavo_69_2   (Turkey)   27
Gallus_gallus_69_2   (Chicken)   32
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   31
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   32
Anolis_carolinensis_69_2.0   (Green anole)   27
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   34
Latimeria_chalumnae_69_1   (Coelacanth)   39
Gadus_morhua_69_1   (Atlantic cod)   40
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   49
Takifugu_rubripes_69_4   (Torafugu)   41
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   40
Oryzias_latipes_69_1   (Japanese medaka)   47
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   66
Oreochromis_niloticus_69_1.0   (Nile tilapia)   76
Danio_rerio_69_9   (Zebrafish)   75
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   7
Ciona_intestinalis_69   (Vase tunicate)   9
Drosophila_melanogaster_69_5   (Fruit fly)   1
Caenorhabditis_elegans_69_215   (Roundworm)   0

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   133
Homo_sapiens__(NCBI_version)   (Human)   70
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   46
NCBI_plasmid_sequences_(Plasmids) 6
STRING_v9.0.5_(STRING) 1196
Uniprot_2018_03_genome 34860
NCBI_2017_08_genome 21665
PDB_chains_(SCOP_1.75)_(PDB) 3
TargetDB__(Targets) 10
UniProt__viral_sequences_(Viral) 5
NCBI_viral_sequences_(Viral) 29
Protein_Data_Bank_(all_PDB_sequenc) 45

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.