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Domain combinations for _gap_,49854,49854,_gap_,50242 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

49854 - Spermadhesin, CUB domain
49854 - Spermadhesin, CUB domain
50242 - TIMP-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Rattus_norvegicus_76_5.0   (Norway rat)   1
Mus_musculus_76_38   (House mouse)   1
Sus_scrofa_76_10.2   (Pig)   2
Ailuropoda_melanoleuca_76_1   (Giant panda)   1
Equus_caballus_76_2   (Horse)   1
Myotis_lucifugus_76_2.0   (Little brown bat)   1
Loxodonta_africana_76_3   (African savanna elephant)   1
Xenopus_laevis_   (African clawed frog)   2
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   1
Latimeria_chalumnae_76_1   (Coelacanth)   1
Lepisosteus_oculatus_76   (Spotted gar)   1
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   2
Takifugu_rubripes_76_4   (Torafugu)   4
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   3
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   2
Poecilia_formosa_76   (Amazon molly)   3
Oreochromis_niloticus_76_1.0   (Nile tilapia)   3
Astyanax_mexicanus_76   (Mexican tetra)   2
Danio_rerio_76_9   (Zebrafish)   2

Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   3

Longest transcript per gene
Genome     Number
Sus_scrofa_69_10.2   (Pig)   2
Ailuropoda_melanoleuca_69_1   (Giant panda)   1
Equus_caballus_69_2   (Horse)   1
Myotis_lucifugus_69_2.0   (Little brown bat)   1
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   1
Latimeria_chalumnae_69_1   (Coelacanth)   1
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   2
Takifugu_rubripes_69_4   (Torafugu)   2
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   2
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   2
Oreochromis_niloticus_69_1.0   (Nile tilapia)   2
Danio_rerio_69_9   (Zebrafish)   2

Others
Genome     Number
STRING_v9.0.5_(STRING) 9
Uniprot_2018_03_genome 962
NCBI_2017_08_genome 149

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