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  Home > SCOP hierarchy > Domain combination - _gap_,49854,_gap_,117281,_gap_,57196,_gap_

Domain combinations for _gap_,49854,_gap_,117281,_gap_,57196,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

49854 - Spermadhesin, CUB domain
117281 - Kelch motif
57196 - EGF/Laminin

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   0
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   1
Crassostrea_gigas_22   (Pacific oyster)   1
Helobdella_robusta_ 1
Nasonia_vitripennis_   (Jewel wasp)   1
Atta_cephalotes_v1.1 0
Lucilia_cuprina   (Australian sheep blowfly)   0
Tribolium_castaneum_3.0   (Red flour beetle)   1
Daphnia_pulex_   (Common water flea)   1
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   1
Meloidogyne_incognita_   (Southern root-knot nematode)   2
Caenorhabditis_elegans_76_235   (Roundworm)   2
Proterospongia_sp._ATCC_50818_ 0
Monosiga_brevicollis_ 0

Strains
Genome     Number
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   2

Longest transcript per gene
Genome     Number
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   0
Caenorhabditis_elegans_69_215   (Roundworm)   1

Others
Genome     Number
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   1
NCBI_2017_08_genome 110
Uniprot_2018_03_genome 3300
STRING_v9.0.5_(STRING) 5

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.