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  Home > SCOP hierarchy > Domain combination - _gap_,49879

Domain combinations for _gap_,49879 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

49879 - SMAD/FHA domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   23
Pan_troglodytes_76_2.1.4   (Chimpanzee)   3
Gorilla_gorilla_76_3.1   (Western gorilla)   2
Pongo_abelii_76_2   (Sumatran orangutan)   3
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   3
Papio_anubis_76   (Olive baboon)   3
Macaca_mulatta_76_1   (Rhesus monkey)   6
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   9
Otolemur_garnettii_76_3   (Small-eared galago)   2
Microcebus_murinus_76_1   (Gray mouse lemur)   1
Rattus_norvegicus_76_5.0   (Norway rat)   3
Mus_musculus_76_38   (House mouse)   4
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   3
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   2
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   3
Cavia_porcellus_76_3   (Domestic guinea pig)   3
Oryctolagus_cuniculus_76_2   (Rabbit)   4
Ochotona_princeps_76   (American pika)   4
Tupaia_belangeri_76   (Northern tree shrew)   1
Sus_scrofa_76_10.2   (Pig)   2
Bos_taurus_76_3.1   (Cattle)   2
Ovis_aries_76_3.1   (Sheep)   4
Vicugna_pacos_76_1   (Alpaca)   2
Tursiops_truncatus_76_1   (Bottlenose dolphin)   4
Mustela_putorius_furo_76_1.0   (Domestic ferret)   2
Ailuropoda_melanoleuca_76_1   (Giant panda)   3
Canis_familiaris_76_3.1   (Dog)   3
Felis_catus_76_6.2   (Domestic cat)   1
Equus_caballus_76_2   (Horse)   2
Myotis_lucifugus_76_2.0   (Little brown bat)   3
Pteropus_vampyrus_76_1   (Large flying fox)   2
Sorex_araneus_76_1   (European shrew)   2
Erinaceus_europaeus_76   (Western European hedgehog)   5
Procavia_capensis_76_1   (Cape rock hyrax)   3
Loxodonta_africana_76_3   (African savanna elephant)   3
Echinops_telfairi_76   (Small Madagascar hedgehog)   4
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   5
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   1
Macropus_eugenii_76_1.0   (Tammar wallaby)   2
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   4
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   2
Ornithorhynchus_anatinus_76_5   (Platypus)   1
Saccoglossus_kowalevskii_v3.0 7
Petromyzon_marinus_76_7.0   (Sea lamprey)   1
Meleagris_gallopavo_76_2   (Turkey)   5
Gallus_gallus_76_4   (Chicken)   3
Anas_platyrhynchos_76_1.0   (Mallard)   1
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   2
Ficedula_albicollis_76_1.0   (Collared flycatcher)   1
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   1
Anolis_carolinensis_76_2.0   (Green anole)   4
Xenopus_laevis_   (African clawed frog)   8
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   3
Latimeria_chalumnae_76_1   (Coelacanth)   3
Lepisosteus_oculatus_76   (Spotted gar)   2
Gadus_morhua_76_1   (Atlantic cod)   1
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   2
Takifugu_rubripes_76_4   (Torafugu)   3
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   3
Oryzias_latipes_76_1   (Japanese medaka)   4
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   3
Poecilia_formosa_76   (Amazon molly)   2
Oreochromis_niloticus_76_1.0   (Nile tilapia)   2
Astyanax_mexicanus_76   (Mexican tetra)   2
Danio_rerio_76_9   (Zebrafish)   6
Oikopleura_dioica 4
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   7
Ciona_intestinalis_76   (Vase tunicate)   4
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   5
Adineta_vaga 2
Octopus_bimaculoides_280 7
Crassostrea_gigas_22   (Pacific oyster)   3
Lottia_gigantea_   (Owl limpet)   1
Helobdella_robusta_ 3
Capitella_sp._I_ 3
Danaus_plexippus_OGS1.0   (Monarch butterfly)   2
Heliconius_melpomene_   (Postman butterfly)   3
Bombyx_mori_   (Domestic silkworm)   4
Nasonia_vitripennis_   (Jewel wasp)   0
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   3
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   3
Linepithema_humile_v1.1   (Argentine ant)   3
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   2
Solenopsis_invicta_v.2.2.3   (Red fire ant)   2
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   2
Atta_cephalotes_v1.1 3
Camponotus_floridanus_v3.3   (Florida carpenter ant)   3
Lucilia_cuprina   (Australian sheep blowfly)   2
Drosophila_grimshawi_1.3 1
Drosophila_willistoni_1.3 4
Drosophila_pseudoobscura_2.13 5
Drosophila_persimilis_1.3 4
Drosophila_suzukii 2
Drosophila_yakuba_1.3 2
Drosophila_simulans_1.3 2
Drosophila_sechellia_1.3 1
Drosophila_melanogaster_76_5   (Fruit fly)   2
Drosophila_erecta_1.3 2
Drosophila_ananassae_1.3 2
Drosophila_virilis_1.2 2
Drosophila_mojavensis_1.3 2
Megaselia_scalaris_22 2
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   2
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   1
Anopheles_darlingi_22   (American malaria mosquito)   2
Anopheles_gambiae_49_3j   (African malaria mosquito)   1
Tribolium_castaneum_3.0   (Red flour beetle)   2
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   3
Acyrthosiphon_pisum_   (Pea aphid)   4
Rhodnius_prolixus_22 1
Daphnia_pulex_   (Common water flea)   1
Strigamia_maritima_22 2
Sarcoptes_scabiei 3
Tetranychus_urticae_   (Two-spotted spider mite)   2
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   2
Pristionchus_pacificus_ 2
Meloidogyne_incognita_   (Southern root-knot nematode)   2
Meloidogyne_hapla_ 2
Onchocerca_volvulus_22 3
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   4
Caenorhabditis_japonica_ 1
Caenorhabditis_brenneri_ 5
Caenorhabditis_remanei_ 3
Caenorhabditis_elegans_76_235   (Roundworm)   5
Caenorhabditis_briggsae_2 2
Trichinella_spiralis_22 3
Hymenolepis_microstoma_ 6
Echinococcus_multilocularis_ 4
Echinococcus_granulosus_ 4
Taenia_solium_   (Pork tapeworm)   5
Schistosoma_mansoni_ 2
Mnemiopsis_leidyi   (Sea walnut)   4
Thelohanellus_kitauei 1
Acropora_digitifera_v1.0 3
Nematostella_vectensis_1.0   (Starlet sea anemone)   1
Hydra_vulgaris 0
Amphimedon_queenslandica 1
Trichoplax_adhaerens_ 2
Proterospongia_sp._ATCC_50818_ 2
Monosiga_brevicollis_ 3
Sphaeroforma_arctica_JP610_ 1
Capsaspora_owczarzaki_ATCC_30864_ 2
Conidiobolus_coronatus_NRRL28638_v1.0 1
Mortierella_verticillata_NRRL_6337_ 1
Phycomyces_blakesleeanus_ 0
Rhizopus_oryzae_RA_99-880_ 0
Mucor_circinelloides_ 0
Rhizomucor_miehei_CAU432_ 1
Malassezia_globosa_CBS_7966_ 0
Sporisorium_reilianum_22 1
Ustilago_maydis_ 0
Mixia_osmundae_IAM_14324_v1.0 1
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 2
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 1
Melampsora_laricis-populina_ 1
Rhodotorula_graminis_WP1_v1.0 1
Sporobolomyces_roseus_IAM_13481_ 0
Microbotryum_violaceum_22 1
Wallemia_sebi_v1.0 1
Sphaerobolus_stellatus_v1.0 0
Piloderma_croceum_F_1598_v1.0 0
Serpula_lacrymans_var._lacrymans_S7.9_ 0
Coniophora_puteana 1
Hydnomerulius_pinastri_v2.0 1
Paxillus_rubicundulus_Ve08.2h10_v1.0 1
Pisolithus_microcarpus_441_v1.0 1
Pisolithus_tinctorius_Marx_270_v1.0 1
Scleroderma_citrinum_Foug_A_v1.0 3
Coprinopsis_cinerea_okayama7_130_v3 1
Pleurotus_ostreatus_   (Oyster mushroom)   0
Amanita_thiersii_Skay4041_v1.0 1
Amanita_muscaria_Koide_v1.0   (Fly agaric)   1
Galerina_marginata_v1.0 1
Hebeloma_cylindrosporum_h7_v2.0 1
Laccaria_bicolor_S238N-H82_ 1
Agaricus_bisporus_var._bisporus_ 1
Schizophyllum_commune_ 0
Stereum_hirsutum_FP-91666_SS1__v1.0 1
Heterobasidion_annosum_ 1
Gloeophyllum_trabeumv1.0 0
Punctularia_strigosozonata_v1.0 1
Sebacina_vermifera_MAFF_305830_v1.0 2
Fomitiporia_mediterranea_v1.0 1
Tulasnella_calospora_AL13/4D_v1.0 1
Postia_placenta_ 0
Wolfiporia_cocos_MD-104_SS10__v1.0 1
Fomitopsis_pinicolav1.0 1
Fomitopsis_pinicola_FP-58527_SS1_v3.0 1
Phanerochaete_chrysosporium_RP-78_2.1 2
Dichomitus_squalens 1
Trametes_versicolor_v1.0 1
Tremella_mesenterica_   (Witches' butter)   0
Daldinia_eschscholzii_EC12_v1.0 1
Apiospora_montagnei_NRRL_25634_v1.0 1
Magnaporthe_poae_ATCC_64411_22 1
Magnaporthe_grisea_70-15_ 1
Podospora_anserina_ 1
Sporotrichum_thermophile_ATCC_42464_ 1
Thielavia_terrestris_NRRL_8126_ 1
Chaetomium_globosum_CBS_148.51_ 0
Neurospora_tetrasperma_ 1
Neurospora_discreta_FGSC_8579_ 0
Neurospora_crassa_OR74A_ 1
Cryphonectria_parasitica_   (Chestnut blight fungus)   1
Verticillium_albo-atrum_VaMs.102_ 1
Verticillium_dahliae_VdLs.17_ 1
Acremonium_alcalophilumv_1.0 0
Glomerella_graminicola_22 1
Fusarium_graminearum_ 1
Nectria_haematococca_mpVI_ 1
Fusarium_oxysporum_f._sp._lycopersici_4286_ 0
Fusarium_verticillioides_7600_ 1
Trichoderma_asperellum_CBS_433.97_v1.0 1
Trichoderma_atroviride_ 1
Trichoderma_citrinoviride_v1.0 1
Trichoderma_reesei_1.2 1
Trichoderma_virens_Gv29-8_ 1
Trichoderma_longibrachiatum_ATCC_18648_v1.0 1
Trichoderma_harzianum_CBS_226.95_v1.0 1
Amorphotheca_resinae_v1.0   (Creosote fungus)   1
Botrytis_cinerea_B05.10_ 1
Sclerotinia_sclerotiorum_ 0
Blumeria_graminis_22 1
Didymella_exigua_CBS_183.55_v1.0 1
Leptosphaeria_maculans_22 1
Setosphaeria_turcica_v1.0 1
Cochliobolus_miyabeanus_ATCC_44560_v1.0 1
Cochliobolus_victoriae_FI3_v1.0 1
Cochliobolus_carbonum_26-R-13_v1.0 1
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   0
Alternaria_brassicicola_ 1
Cochliobolus_lunatus_m118_v2.0 1
Pyrenophora_teres_f._teres_22 2
Pyrenophora_tritici-repentis_ 2
Stagonospora_nodorum_ 2
Mycosphaerella_graminicola_IPO323_ 0
Zasmidium_cellare_ATCC_36951_v1.0 1
Dothistroma_septosporum 1
Septoria_musiva_v1.0 1
Mycosphaerella_fijiensis_CIRAD86_ 1
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 0
Paracoccidioides_brasiliensis_Pb18_ 1
Coccidioides_posadasii_RMSCC_3488_ 1
Coccidioides_immitis_RS_ 1
Ajellomyces_dermatitidis_SLH14081_ 1
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 1
Microsporum_canis_CBS_113480_ 1
Trichophyton_equinum_CBS_127.97_ 1
Trichophyton_verrucosum_HKI_0517_ 1
Arthroderma_benhamiae_CBS_112371_ 1
Trichophyton_tonsurans_CBS_112818_ 1
Trichophyton_rubrum_CBS_118892_ 1
Uncinocarpus_reesii_1704_ 1
Aspergillus_zonatus_v1.0 0
Penicillium_chrysogenum_Wisconsin_54-1255_ 1
Penicillium_chrysogenum_v1.0 1
Aspergillus_acidus_v1.0 1
Aspergillus_fumigatus_Af293 1
Aspergillus_brasiliensis_v1.0 1
Aspergillus_nidulans_FGSC_A4_ 1
Aspergillus_sydowii_v1.0 1
Aspergillus_versicolor_v1.0 1
Aspergillus_glaucus 0
Aspergillus_carbonarius_ITEM_5010_ 1
Neosartorya_fischeri_NRRL_181_ 1
Aspergillus_terreus_NIH2624_ 1
Aspergillus_tubingensis_v1.0 1
Aspergillus_wentii_v1.0 0
Aspergillus_oryzae_RIB40_ 1
Aspergillus_niger_22 1
Aspergillus_niger_ATCC_1015_ 0
Aspergillus_flavus_NRRL3357_ 1
Aspergillus_clavatus_NRRL_1_ 1
Penicillium_marneffei_ATCC_18224_ 1
Tuber_melanosporum_Mel28_22 1
Tuber_melanosporum_Vittad_   (Perigord truffle)   1
Hansenula_polymorpha_v2.0 0
Dekkera_bruxellensis_CBS_2499_v2.0 0
Pichia_membranifaciensv1.0 1
Candida_tanzawaensis_NRRL_Y-17324__v1.0 0
Candida_dubliniensis_CD36_ 0
Candida_tropicalis_MYA-3404_ 0
Candida_parapsilosis_ 0
Candida_albicans_SC5314 0
Lodderomyces_elongisporus_NRRL_YB-4239_ 0
Babjeviella_inositovora_NRRL_Y-12698_v1.0 0
Pichia_stipitis_CBS_6054_ 0
Candida_guilliermondii_ATCC_6260_ 0
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 0
Debaromyces_hansenii 0
Wickerhamomyces_anomalus 0
Pichia_pastoris_GS115_ 1
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 0
Yarrowia_lipolytica_CLIB122 1
Candida_lusitaniae_ATCC_42720_ 0
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 0
Vanderwaltozyma_polyspora_DSM_70294_ 1
Candida_glabrata_CBS138 1
Kluyveromyces_thermotolerans_CBS_6340 1
Lachancea_kluyveri_ 1
Kluyveromyces_waltii 1
Ashbya_gossypii_ATCC_10895_ 1
Zygosaccharomyces_rouxii_ 0
Saccharomyces_mikatae_MIT 0
Saccharomyces_paradoxus_MIT 2
Saccharomyces_cerevisiae_76   (Baker's yeast)   1
Saccharomyces_bayanus_MIT 0
Kluyveromyces_lactis 1
Schizosaccharomyces_cryophilus_OY26_22 0
Schizosaccharomyces_octosporus_yFS286_ 0
Schizosaccharomyces_japonicus_yFS275_ 0
Schizosaccharomyces_pombe   (Fission yeast)   0
Catenaria_anguillulae_PL171_v1.0 2
Allomyces_macrogynus_ATCC_38327_ 1
Spizellomyces_punctatus_DAOM_BR117_ 1
Dictyostelium_discoideum 1
Dictyostelium_purpureum_ 2
Entamoeba_dispar_1.2 4
Entamoeba_invadens_1.2 3
Entamoeba_histolytica_1 4
Selaginella_moellendorffii_ 3
Pinus_taeda   (Loblolly pine)   1
Picea_abies   (Norway spruce)   0
Eucalyptus_grandis_v201   (Rose gum)   5
Theobroma_cacao_B97-61/B2_v1   (Cacao)   3
Gossypium_raimondii_v221 12
Citrus_clementina_v165 5
Citrus_sinensis_v154   (Sweet orange)   7
Thellungiella_halophila_v173 4
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   5
Capsella_rubella_v183 3
Arabidopsis_lyrata_   (Lyrate rockcress)   4
Arabidopsis_thaliana_10   (Thale cress)   7
Carica_papaya_   (Papaya)   4
Medicago_truncatula_   (Barrel medic)   7
Phaseolus_vulgaris_v186   (French bean)   3
Glycine_max_v109   (Soybean)   9
Cucumis_sativus_v122   (Cucumber)   6
Fragaria_vesca_   (Wild strawberry)   1
Malus_domestica_v196   (Apple)   5
Prunus_persica_v139   (Peach)   4
Linum_usitatissimum_v200   (Flax)   7
Manihot_esculenta_v147   (Cassava)   7
Populus_trichocarpa_v156   (Black cottonwood)   6
Vitis_vinifera_   (Wine grape)   3
Mimulus_guttatus_v140   (Spotted monkey flower)   4
Solanum_lycopersicum_v.2.3   (Tomato)   3
Solanum_tuberosum_   (Potato)   1
Actinidia_chinensis_Hongyang_ 1
Aquilegia_coerulea_v195 12
Triticum_urartu_22 1
Triticum_aestivum_22   (Bread wheat)   8
Aegilops_tauschii_22 3
Brachypodium_distachyon_   (Stiff brome)   8
Oryza_barthii_22   (African wild rice)   8
Oryza_meridionalis_22 6
Oryza_glumaepatula_22 6
Oryza_glaberrima   (African rice)   3
Oryza_punctata_22 6
Oryza_nivara_22 11
Oryza_brachyantha_22   (Malo sina)   3
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   7
Oryza_sativa_v193   (Rice)   7
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   2
Panicum_virgatum_v202   (Switchgrass)   6
Setaria_italica_v164   (Foxtail millet)   6
Zea_mays_subsp._mays_   (Maize)   5
Zea_mays_v181   (Maize)   6
Sorghum_bicolor_   (Sorghum)   4
Musa_balbisiana   (Balbis banana)   2
Musa_acuminata_22   (Wild Malaysian banana)   4
Amborella_trichopoda_22 3
Physcomitrella_patens 2
Coccomyxa_subellipsoidea_sp._C-169_v2 1
Asterochloris_sp._Cgr/DA1pho_v1.0 0
Chlorella_variabilis_sp._NC64A_ 0
Chlorella_vulgaris_ 1
Volvox_carteri_f._nagariensis_ 0
Volvox_carteri_v199 0
Chlamydomonas_reinhardtii_4.0 1
Ostreococcus_sp._RCC809_ 2
Ostreococcus_lucimarinus_CCE9901_ 3
Ostreococcus_tauri_ 2
Bathycoccus_prasinos_ 5
Micromonas_sp._RCC299_ 2
Micromonas_pusilla_CCMP1545_v3.0 4
Thecamonas_trahens_ATCC_50062_ 2
Bigelowiella_natans_CCMP2755_22 4
Cyanophora_paradoxa_ 2
Leishmania_mexicana_2.4 2
Leishmania_major_strain_Friedlin_ 1
Leishmania_infantum_JPCM5_2.4 1
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 1
Trypanosoma_vivax_ 1
Trypanosoma_cruzi_strain_CL_Brener 1
Trypanosoma_congolense_2.4 1
Trypanosoma_brucei_gambiense_v4.1 1
Trypanosoma_brucei_TREU927_v4.1 1
Ectocarpus_siliculosus 1
Aureococcus_anophagefferens_ 0
Albugo_laibachii_22 2
Pythium_iwayamai_DAOM_BR242034_22 1
Pythium_arrhenomanes_ATCC_12531_22 1
Pythium_ultimum_v1.7-2 2
Pythium_aphanidermatum_DAOM_BR444_22 0
Pythium_irregulare_DAOM_BR486_22 3
Pythium_vexans_DAOM_BR484_22 1
Phytophthora_ramorum_1.1   (Sudden oak death agent)   3
Phytophthora_sojae_1.1 1
Phytophthora_infestans_T30-4_ 2
Phytophthora_capsici_ 2
Hyaloperonospora_arabidopsidis_22 2
Phaeodactylum_tricornutumCCAP_1055/1 1
Fragilariopsis_cylindrus 5
Thalassiosira_pseudonana_CCMP1335 2
Perkinsus_marinus_ATCC_50983_ 5
Paramecium_tetraurelia_ 9
Tetrahymena_thermophila_SB210_1_ 6
Ichthyophthirius_multifiliis_strain_G5_ 1
Cryptosporidium_hominis 1
Cryptosporidium_muris 1
Cryptosporidium_parvum_Iowa_II 2
Neospora_caninum 1
Toxoplasma_gondii_VEG 1
Toxoplasma_gondii_ME49 1
Toxoplasma_gondii_GT1 1
Babesia_bovis_T2Bo_ 2
Theileria_parva__ 0
Theileria_annulata 1
Plasmodium_falciparum_3D7_ 1
Plasmodium_vivax_SaI-1_7.0 1
Plasmodium_knowlesi_strain_H_ 1
Plasmodium_yoelii_ssp._yoelii_1_ 1
Plasmodium_chabaudi_ 1
Plasmodium_berghei_ANKA_ 1
Symbiodinium_minutum_clade_B1_v1.2 5
Naegleria_gruberi_ 0
Trichomonas_vaginalis_ 9
Guillardia_theta_CCMP2712_v1.0_ 4
Emiliania_huxleyi_CCMP1516_ 10
Thermobaculum_terrenum_ATCC_BAA-798 1
Leptolyngbya_sp._PCC_7376 3
Pseudanabaena_sp._PCC_7367 1
Acaryochloris_marina_MBIC11017 2
Synechocystis_sp._PCC_6803 1
Thermosynechococcus_sp._NK55 1
Thermosynechococcus_elongatus_BP-1 1
Synechococcus_sp._PCC_7502 1
Synechococcus_sp._PCC_6312 1
Synechococcus_elongatus_PCC_7942 1
Microcoleus_sp._PCC_7113 2
Trichodesmium_erythraeum_IMS101 4
Geitlerinema_sp._PCC_7407 3
Cyanothece_sp._PCC_8802 2
Gloeocapsa_sp._PCC_7428 1
Halothece_sp._PCC_7418 1
Microcystis_aeruginosa_NIES-843 2
Gloeobacter_violaceus_PCC_7421 3
Rivularia_sp._PCC_7116 2
Calothrix_sp._PCC_7507 2
Anabaena_variabilis_ATCC_29413 3
'Nostoc_azollae'_0708 2
Nostoc_sp._PCC_7107 2
Nostoc_punctiforme_PCC_73102 3
Nostoc_sp._PCC_7120 2
Nostoc_sp._PCC_7524 2
Anabaena_sp._90 2
Conexibacter_woesei_DSM_14684 1
Cryptobacterium_curtum_DSM_15641 1
Eggerthella_sp._YY7918 1
Eggerthella_lenta_DSM_2243 1
Slackia_heliotrinireducens_DSM_20476 3
Olsenella_uli_DSM_7084 3
Atopobium_parvulum_DSM_20469 1
Coriobacterium_glomerans_PW2 1
Rubrobacter_xylanophilus_DSM_9941 1
Ilumatobacter_coccineus 2
Acidimicrobium_ferrooxidans_DSM_10331 1
Thermobispora_bispora_DSM_43833 3
Nakamurella_multipartita_DSM_44233 4
Acidothermus_cellulolyticus_11B 1
Modestobacter_marinus 3
Blastococcus_saxobsidens_DD2 2
Geodermatophilus_obscurus_DSM_43160 2
Kineococcus_radiotolerans_SRS30216 1
Catenulispora_acidiphila_DSM_44928 4
Stackebrandtia_nassauensis_DSM_44728 2
Frankia_symbiont_of_Datisca_glomerata 2
Frankia_sp._EAN1pec 4
Frankia_alni_ACN14a 3
Thermobifida_fusca_YX 1
Nocardiopsis_dassonvillei_subsp._dassonvillei_DSM_43111 2
Thermomonospora_curvata_DSM_43183 3
Streptosporangium_roseum_DSM_43021 2
Kitasatospora_setae_KM-6054 4
Streptomyces_coelicolor_A3(2) 4
Streptomyces_sp._PAMC26508 2
Streptomyces_flavogriseus_ATCC_33331 3
Streptomyces_sp._SirexAA-E 4
Streptomyces_griseus_subsp._griseus_NBRC_13350 4
Streptomyces_bingchenggensis_BCW-1 2
Streptomyces_violaceusniger_Tu_4113 4
Streptomyces_avermitilis_MA-4680 4
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 3
Streptomyces_scabiei_87.22 2
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 3
Actinosynnema_mirum_DSM_43827 1
Saccharomonospora_viridis_DSM_43017 1
Pseudonocardia_dioxanivorans_CB1190 1
Saccharopolyspora_erythraea_NRRL_2338 1
Amycolatopsis_mediterranei_U32 1
Kribbella_flavida_DSM_17836 4
Nocardioides_sp._JS614 3
Propionibacterium_propionicum_F0230a 4
Propionibacterium_acnes_SK137 2
Microlunatus_phosphovorus_NM-1 4
Propionibacterium_freudenreichii_subsp._shermanii_CIRM-BIA1 2
Salinispora_arenicola_CNS-205 2
Salinispora_tropica_CNB-440 2
Verrucosispora_maris_AB-18-032 2
Micromonospora_sp._L5 2
Micromonospora_aurantiaca_ATCC_27029 2
Actinoplanes_sp._N902-109 3
Actinoplanes_sp._SE50/110 3
Actinoplanes_missouriensis_431 3
Segniliparus_rotundus_DSM_44985 1
Tsukamurella_paurometabola_DSM_20162 3
Gordonia_sp._KTR9 2
Gordonia_polyisoprenivorans_VH2 2
Gordonia_bronchialis_DSM_43247 2
Rhodococcus_jostii_RHA1 1
Rhodococcus_equi_103S 1
Rhodococcus_opacus_B4 1
Rhodococcus_erythropolis_PR4 1
Nocardia_cyriacigeorgica_GUH-2 3
Nocardia_farcinica_IFM_10152 3
Amycolicicoccus_subflavus_DQS3-9A1 1
Mycobacterium_abscessus_ATCC_19977 1
Mycobacterium_sp._JLS 1
Mycobacterium_intracellulare_ATCC_13950 1
Mycobacterium_avium_104 1
Mycobacterium_vanbaalenii_PYR-1 1
Mycobacterium_canettii_CIPT_140010059 1
Mycobacterium_africanum_GM041182 1
Mycobacterium_tuberculosis_KZN_1435 1
Mycobacterium_tuberculosis 1
Mycobacterium_bovis_BCG_str._Pasteur_1173P2 1
Mycobacterium_rhodesiae_NBB3 1
Mycobacterium_ulcerans_Agy99 1
Mycobacterium_gilvum_PYR-GCK 1
Mycobacterium_chubuense_NBB4 1
Mycobacterium_marinum_M 1
Mycobacterium_smegmatis_str._MC2_155 1
Mycobacterium_leprae_Br4923 1
Corynebacterium_resistens_DSM_45100 1
Corynebacterium_aurimucosum_ATCC_700975 1
Corynebacterium_kroppenstedtii_DSM_44385 1
Corynebacterium_efficiens_YS-314 2
Corynebacterium_ulcerans_0102 1
Corynebacterium_urealyticum_DSM_7109 1
Corynebacterium_jeikeium_K411 1
Corynebacterium_variabile_DSM_44702 1
Corynebacterium_pseudotuberculosis_316 1
Corynebacterium_glutamicum_R 1
Corynebacterium_diphtheriae_NCTC_13129 1
Tropheryma_whipplei_TW08/27 1
Sanguibacter_keddieii_DSM_10542 4
Kytococcus_sedentarius_DSM_20547 1
Beutenbergia_cavernae_DSM_12333 4
Leifsonia_xyli_subsp._xyli_str._CTCB07 4
Microbacterium_testaceum_StLB037 4
Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382 3
Jonesia_denitrificans_DSM_20603 3
Intrasporangium_calvum_DSM_43043 2
Brachybacterium_faecium_DSM_4810 3
Isoptericola_variabilis_225 3
Xylanimonas_cellulosilytica_DSM_15894 3
Cellulomonas_flavigena_DSM_20109 5
Cellulomonas_fimi_ATCC_484 5
[Cellvibrio]_gilvus_ATCC_13127 6
Arthrobacter_phenanthrenivorans_Sphe3 4
Arthrobacter_chlorophenolicus_A6 4
Arthrobacter_aurescens_TC1 4
Arthrobacter_arilaitensis_Re117 3
Kocuria_rhizophila_DC2201 1
Rothia_mucilaginosa_DY-18 1
Rothia_dentocariosa_ATCC_17931 1
Arthrobacter_sp._Rue61a 3
Arthrobacter_sp._FB24 5
Renibacterium_salmoninarum_ATCC_33209 1
Micrococcus_luteus_NCTC_2665 2
Gardnerella_vaginalis_409-05 1
Bifidobacterium_longum_subsp._longum_JDM301 3
Bifidobacterium_animalis_subsp._lactis_Bl-04 2
Bifidobacterium_dentium_Bd1 2
Bifidobacterium_breve_ACS-071-V-Sch8b 1
Bifidobacterium_bifidum_S17 2
Bifidobacterium_adolescentis_ATCC_15703 2
Arcanobacterium_haemolyticum_DSM_20595 1
Mobiluncus_curtisii_ATCC_43063 1
Actinomyces_sp._F0330 4
Anaerolinea_thermophila_UNI-1 3
Thermomicrobium_roseum_DSM_5159 1
Sphaerobacter_thermophilus_DSM_20745 1
Herpetosiphon_aurantiacus_DSM_785 5
Roseiflexus_sp._RS-1 7
Roseiflexus_castenholzii_DSM_13941 6
Chloroflexus_sp._MS-G 3
Chloroflexus_sp._Y-400-fl 4
Chloroflexus_aggregans_DSM_9485 4
Chloroflexus_aurantiacus_J-10-fl 4
Deinococcus_radiodurans_R1 1
Meiothermus_silvanus_DSM_9946 1
Selenomonas_sputigena_ATCC_35185 1
Selenomonas_ruminantium_subsp._lactilytica_TAM6421 2
Clostridium_clariflavum_DSM_19732 2
Clostridium_cellulolyticum_H10 1
Clostridium_thermocellum_ATCC_27405 1
Oscillibacter_valericigenes_Sjm18-20 1
butyrate-producing_bacterium_SS3/4 1
Thermincola_potens_JR 2
Pelotomaculum_thermopropionicum_SI 1
Desulfosporosinus_acidiphilus_SJ4 1
Desulfosporosinus_orientis_DSM_765 1
Dehalobacter_sp._DCA 1
Dehalobacter_sp._CF 1
Syntrophobotulus_glycolicus_DSM_8271 1
Desulfitobacterium_dehalogenans_ATCC_51507 1
Desulfotomaculum_reducens_MI-1 1
Desulfotomaculum_acetoxidans_DSM_771 1
Desulfotomaculum_kuznetsovii_DSM_6115 1
Desulfotomaculum_carboxydivorans_CO-1-SRB 1
Desulfotomaculum_ruminis_DSM_2154 1
Eubacterium_eligens_ATCC_27750 1
Eubacterium_limosum_KIST612 1
Clostridium_saccharolyticum_WM1 1
Clostridium_phytofermentans_ISDg 1
Clostridium_lentocellum_DSM_5427 1
[Ruminococcus]_obeum 1
[Ruminococcus]_torques 1
Eubacterium_rectale_M104/1 2
Eubacterium_rectale_ATCC_33656 3
Coprococcus_sp._ART55/1 4
Roseburia_hominis_A2-183 1
Butyrivibrio_proteoclasticus_B316 1
Butyrivibrio_fibrisolvens 1
Syntrophothermus_lipocalidus_DSM_12680 1
Heliobacterium_modesticaldum_Ice1 0
Clostridium_sp._BNL1100 1
Clostridium_beijerinckii_NCIMB_8052 1
Clostridium_acetobutylicum_ATCC_824 2
Moorella_thermoacetica_ATCC_39073 1
Brevibacillus_brevis_NBRC_100599 1
Paenibacillus_sp._JDR-2 1
Paenibacillus_terrae_HPL-003 2
Paenibacillus_mucilaginosus_3016 1
Paenibacillus_polymyxa_M1 2
Lysinibacillus_sphaericus_C3-41 1
Bacillus_sp._1NLA3E 1
Bacillus_cellulosilyticus_DSM_2522 1
Pelodictyon_phaeoclathratiforme_BU-1 1
Niastella_koreensis_GR20-10 2
Fibrella_aestuarina 3
Spirosoma_linguale_DSM_74 2
Runella_slithyformis_DSM_19594 1
Prevotella_ruminicola_23 1
Bacteroides_salanitronis_DSM_18170 1
Bacteroides_thetaiotaomicron_VPI-5482 1
Pedobacter_heparinus_DSM_2366 1
Parachlamydia_acanthamoebae_UV-7 0
Chlamydophila_pecorum_E58 0
Chlamydia_muridarum_Nigg 0
Chlamydophila_pneumoniae_TW-183 0
Chlamydophila_caviae_GPIC 0
Chlamydophila_felis_Fe/C-56 0
Chlamydophila_abortus_S26/3 0
Chlamydia_psittaci_01DC11 0
Chlamydia_trachomatis_B/Jali20/OT 0
Isosphaera_pallida_ATCC_43644 1
Planctomyces_limnophilus_DSM_3776 1
Rhodopirellula_baltica_SH_1 1
Pirellula_staleyi_DSM_6068 0
Turneriella_parva_DSM_21527 0
Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._L550 1
Leptospira_interrogans_serovar_Lai_str._IPAV 1
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Paris)' 1
Spirochaeta_smaragdinae_DSM_11293 1
Spirochaeta_africana_DSM_8902 1
Spirochaeta_thermophila_DSM_6192 1
Candidatus_Chloracidobacterium_thermophilum_B 1
Candidatus_Solibacter_usitatus_Ellin6076 4
Granulicella_mallensis_MP5ACTX8 4
Streptobacillus_moniliformis_DSM_12112 1
Sebaldella_termitidis_ATCC_33386 1
Leptotrichia_buccalis_C-1013-b 3
Desulfobacca_acetoxidans_DSM_11109 1
Desulfomonile_tiedjei_DSM_6799 1
Desulfotalea_psychrophila_LSv54 1
Desulfatibacillum_alkenivorans_AK-01 0
Geobacter_lovleyi_SZ 1
Haliangium_ochraceum_DSM_14365 5
Sorangium_cellulosum_'So_ce_56' 5
Anaeromyxobacter_sp._Fw109-5 2
Anaeromyxobacter_dehalogenans_2CP-1 2
Stigmatella_aurantiaca_DW4/3-1 2
Corallococcus_coralloides_DSM_2259 3
Myxococcus_xanthus_DK_1622 4
Myxococcus_fulvus_HW-1 3
Dechlorosoma_suillum_PS 1
Advenella_kashmirensis_WT001 0
Hyphomonas_neptunium_ATCC_15444 1
Jannaschia_sp._CCS1 2
Ruegeria_pomeroyi_DSS-3 1
Roseobacter_litoralis_Och_149 1
Rhodobacter_sphaeroides_ATCC_17029 0
Azospirillum_lipoferum_4B 1
Azospirillum_sp._B510 1
Hyphomicrobium_sp._MC1 2
Hyphomicrobium_denitrificans_ATCC_51888 2
Glaciecola_nitratireducens_FR1064 0
Alteromonas_sp._SN2 1
Methylomonas_methanica_MC09 1
Pseudoxanthomonas_spadix_BD-a59 1
Pseudoxanthomonas_suwonensis_11-1 1
Stenotrophomonas_maltophilia_K279a 1
Xylella_fastidiosa_M23 1
Xanthomonas_axonopodis_pv._citri_str._306 1
Xanthomonas_albilineans_GPE_PC73 1
Xanthomonas_oryzae_pv._oryzae_PXO99A 1
Xanthomonas_campestris_pv._campestris_str._B100 1
Thiocystis_violascens_DSM_198 1
Nitrosococcus_halophilus_Nc4 0
gamma_proteobacterium_HdN1 0
Pyrolobus_fumarii_1A 1
Metallosphaera_cuprina_Ar-4 1
Metallosphaera_sedula_DSM_5348 1
Acidianus_hospitalis_W1 1
Sulfolobus_tokodaii_str._7 1
Sulfolobus_islandicus_Y.N.15.51 1
Sulfolobus_solfataricus_P2 1
Sulfolobus_acidocaldarius_DSM_639 1
Thermoproteus_uzoniensis_768-20 1
Picrophilus_torridus_DSM_9790 1
Halomicrobium_mukohataei_DSM_12286 1
Haloarcula_hispanica_ATCC_33960 1
Haloarcula_marismortui_ATCC_43049 1
Methanobrevibacter_ruminantium_M1 1

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   5
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   2
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   1
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   1
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   3
Cryptococcus_neoformans_var._grubii_H99_ 1
Cryptococcus_neoformans_B-3501A_ 1
Cryptococcus_neoformans_JEC21_ 1
Paracoccidioides_brasiliensis_Pb01_ 1
Paracoccidioides_brasiliensis_Pb03_ 1
Coccidioides_posadasii_str._Silveira_ 1
Coccidioides_immitis_RMSCC_3703_ 0
Coccidioides_immitis_RMSCC_2394_ 1
Coccidioides_immitis_H538.4_ 2
Ajellomyces_dermatitidis_ER-3_ 1
Histoplasma_capsulatum_H143 1
Histoplasma_capsulatum_H88 1
Histoplasma_capsulatum_G186AR 1
Aspergillus_fumigatus_A1163_ 1
Candida_albicans_WO-1_ 0
Saccharomyces_cerevisiae_UC5 0
Saccharomyces_cerevisiae_PW5 1
Saccharomyces_cerevisiae_FL100 0
Saccharomyces_cerevisiae_CLIB324 1
Saccharomyces_cerevisiae_CBS7960 1
Saccharomyces_cerevisiae_YJM269 1
Saccharomyces_cerevisiae_T7 1
Saccharomyces_cerevisiae_FostersB 2
Saccharomyces_cerevisiae_FostersO 3
Saccharomyces_cerevisiae_VL3 1
Saccharomyces_cerevisiae_Vin13 2
Saccharomyces_cerevisiae_LalvinQA23 2
Saccharomyces_cerevisiae_AWRI796 1
Saccharomyces_cerevisiae_Sigma1278b 1
Saccharomyces_cerevisiae_W303 1
Saccharomyces_cerevisiae_JAY291 1
Saccharomyces_cerevisiae_AWRI1631 1
Saccharomyces_cerevisiae_YPS163 0
Saccharomyces_cerevisiae_M22 1
Saccharomyces_cerevisiae_T73 1
Saccharomyces_cerevisiae_CLIB215 1
Saccharomyces_cerevisiae_Y10 0
Saccharomyces_cerevisiae_YJM789_ 1
Saccharomyces_cerevisiae_YJM789 1
Saccharomyces_cerevisiae_RM11-1a 1
Saccharomyces_cerevisiae_RM11-1a_ 1
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   1
Schizosaccharomyces_pombe_972h-_ 0
Batrachochytrium_dendrobatidis_JEL423_ 1
Batrachochytrium_dendrobatidis_JAM81_ 0
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   4
Hordeum_vulgare_22   (Domesticated barley)   6
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   4
Trypanosoma_brucei_Lister_427_v4.1 1
Neospora_caninum_Nc-Liverpool_6.2 1
Plasmodium_falciparum_HB3_ 1
Plasmodium_falciparum_Dd2_ 1
Chroococcidiopsis_thermalis_PCC_7203 3
Chamaesiphon_minutus_PCC_6605 3
Synechocystis_sp._PCC_6803_substr._PCC-P 1
Synechocystis_sp._PCC_6803_substr._PCC-N 1
Synechocystis_sp._PCC_6803_substr._GT-I 1
Synechocystis_sp._PCC_6803 1
Dactylococcopsis_salina_PCC_8305 1
Synechococcus_sp._PCC_7002 2
Synechococcus_elongatus_PCC_6301 1
Crinalium_epipsammum_PCC_9333 2
Oscillatoria_nigro-viridis_PCC_7112 2
Oscillatoria_acuminata_PCC_6304 3
Arthrospira_platensis_NIES-39 3
Cyanothece_sp._PCC_7822 4
Cyanothece_sp._PCC_7425 1
Cyanothece_sp._PCC_7424 3
Cyanothece_sp._ATCC_51142 1
Cyanothece_sp._PCC_8801 2
Cyanobacterium_aponinum_PCC_10605 0
Cyanobacterium_stanieri_PCC_7202 2
Gloeobacter_kilaueensis_Gloeobacter_sp._JS 2
Pleurocapsa_minor_Pleurocapsa_sp._PCC_7327 2
Stanieria_cyanosphaera_PCC_7437 1
Calothrix_parietina_Calothrix_sp._PCC_6303 2
Cylindrospermum_stagnale_PCC_7417 3
Anabaena_cylindrica_PCC_7122 2
Adlercreutzia_equolifaciens_DSM_19450 1
Frankia_sp._EuI1c 3
Frankia_sp._CcI3 2
Nocardiopsis_alba_ATCC_BAA-2165 1
Streptomyces_albus_J1074 3
Streptomyces_rapamycinicus_NRRL_5491 1
Streptomyces_davawensis_JCM_4913 2
Streptomyces_fulvissimus_DSM_40593 4
Streptomyces_venezuelae_ATCC_10712 5
Streptomyces_collinus_Tu_365 3
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 3
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 3
Saccharothrix_espanaensis_DSM_44229 3
Amycolatopsis_mediterranei_RB 1
Amycolatopsis_mediterranei_S699 1
Amycolatopsis_mediterranei_S699 1
Amycolatopsis_orientalis_HCCB10007 1
Propionibacterium_avidum_44067 2
Propionibacterium_acnes_ATCC_11828 2
Propionibacterium_acnes_TypeIA2_P.acn31 2
Propionibacterium_acnes_TypeIA2_P.acn17 2
Propionibacterium_acnes_TypeIA2_P.acn33 2
Propionibacterium_acnes_C1 2
Propionibacterium_acnes_HL096PA1 2
Propionibacterium_acnes_6609 2
Propionibacterium_acnes_266 2
Propionibacterium_acnes_KPA171202 2
Propionibacterium_acidipropionici_ATCC_4875 2
Actinoplanes_friuliensis_DSM_7358 3
Rhodococcus_pyridinivorans_SB3094 1
Rhodococcus_erythropolis_CCM2595 1
Nocardia_brasiliensis_ATCC_700358 4
Mycobacterium_sp._MOTT36Y 1
Mycobacterium_sp._JDM601 1
Mycobacterium_abscessus_subsp._bolletii_50594 1
Mycobacterium_liflandii_128FXT 1
Mycobacterium_sp._KMS 1
Mycobacterium_sp._MCS 1
Mycobacterium_yongonense_05-1390 1
Mycobacterium_intracellulare_MOTT-64 1
Mycobacterium_indicus_pranii_MTCC_9506 1
Mycobacterium_intracellulare_MOTT-02 1
Mycobacterium_avium_subsp._paratuberculosis_MAP4 1
Mycobacterium_avium_subsp._paratuberculosis_K-10 1
Mycobacterium_canettii_CIPT_140070017 1
Mycobacterium_canettii_CIPT_140060008 1
Mycobacterium_canettii_CIPT_140070008 1
Mycobacterium_canettii_CIPT_140070010 1
Mycobacterium_tuberculosis_EAI5/NITR206 1
Mycobacterium_tuberculosis_EAI5 1
Mycobacterium_tuberculosis_CAS/NITR204 1
Mycobacterium_tuberculosis_str._Beijing/NITR203 1
Mycobacterium_tuberculosis_UT205 1
Mycobacterium_tuberculosis_RGTB423 1
Mycobacterium_tuberculosis_RGTB327 1
Mycobacterium_tuberculosis_CTRI-2 1
Mycobacterium_tuberculosis_str._Erdman_=_ATCC_35801 1
Mycobacterium_tuberculosis_KZN_605 1
Mycobacterium_tuberculosis_KZN_4207 1
Mycobacterium_tuberculosis_CCDC5180 1
Mycobacterium_tuberculosis_CCDC5079 1
Mycobacterium_tuberculosis_CCDC5079 1
Mycobacterium_tuberculosis_H37Ra 1
Mycobacterium_tuberculosis_str._Haarlem 1
Mycobacterium_tuberculosis_F11 1
Mycobacterium_tuberculosis_H37Rv 1
Mycobacterium_tuberculosis_CDC1551 1
Mycobacterium_bovis_AF2122/97 1
Mycobacterium_bovis_BCG_str._Korea_1168P 1
Mycobacterium_bovis_BCG_str._Mexico 1
Mycobacterium_bovis_BCG_str._Tokyo_172 1
Mycobacterium_gilvum_Spyr1 1
Mycobacterium_smegmatis_str._MC2_155 1
Mycobacterium_leprae_TN 1
Mycobacterium_kansasii_ATCC_12478 1
Corynebacterium_maris_DSM_45190 1
Corynebacterium_halotolerans_YIM_70093_=_DSM_44683 1
Corynebacterium_terpenotabidum_Y-11 1
Corynebacterium_ulcerans_BR-AD22 1
Corynebacterium_ulcerans_809 1
Corynebacterium_urealyticum_DSM_7111 1
Corynebacterium_argentoratense_DSM_44202 1
Corynebacterium_callunae_DSM_20147 1
Corynebacterium_pseudotuberculosis_258 1
Corynebacterium_pseudotuberculosis_Cp162 1
Corynebacterium_pseudotuberculosis_P54B96 1
Corynebacterium_pseudotuberculosis_267 1
Corynebacterium_pseudotuberculosis_1/06-A 1
Corynebacterium_pseudotuberculosis_42/02-A 1
Corynebacterium_pseudotuberculosis_3/99-5 1
Corynebacterium_pseudotuberculosis_31 1
Corynebacterium_pseudotuberculosis_CIP_52.97 1
Corynebacterium_pseudotuberculosis_PAT10 1
Corynebacterium_pseudotuberculosis_I19 1
Corynebacterium_pseudotuberculosis_FRC41 1
Corynebacterium_pseudotuberculosis_C231 1
Corynebacterium_pseudotuberculosis_1002 1
Corynebacterium_glutamicum_MB001 1
Corynebacterium_glutamicum_SCgG2 1
Corynebacterium_glutamicum_SCgG1 1
Corynebacterium_glutamicum_ATCC_13032 1
Corynebacterium_glutamicum_ATCC_13032 1
Corynebacterium_glutamicum_ATCC_13032 1
Corynebacterium_diphtheriae_BH8 1
Corynebacterium_diphtheriae_INCA_402 1
Corynebacterium_diphtheriae_VA01 1
Corynebacterium_diphtheriae_HC04 1
Corynebacterium_diphtheriae_HC03 1
Corynebacterium_diphtheriae_HC02 1
Corynebacterium_diphtheriae_HC01 1
Corynebacterium_diphtheriae_241 1
Corynebacterium_diphtheriae_CDCE_8392 1
Corynebacterium_diphtheriae_PW8 1
Corynebacterium_diphtheriae_C7_(beta) 1
Corynebacterium_diphtheriae_31A 1
Tropheryma_whipplei_str._Twist 1
Leifsonia_xyli_subsp._cynodontis_DSM_46306 2
Clavibacter_michiganensis_subsp._sepedonicus 4
Clavibacter_michiganensis_subsp._nebraskensis_NCPPB_2581 3
Gardnerella_vaginalis_HMP9231 1
Gardnerella_vaginalis_ATCC_14019 1
Bifidobacterium_longum_NCC2705 1
Bifidobacterium_longum_DJO10A 2
Bifidobacterium_longum_subsp._infantis_157F 2
Bifidobacterium_longum_subsp._infantis_ATCC_15697_=_JCM_1222 1
Bifidobacterium_longum_subsp._infantis_ATCC_15697_=_JCM_1222 1
Bifidobacterium_longum_subsp._longum_KACC_91563 2
Bifidobacterium_longum_subsp._longum_BBMN68 2
Bifidobacterium_longum_subsp._longum_F8 2
Bifidobacterium_longum_subsp._longum_JCM_1217 2
Bifidobacterium_thermophilum_RBL67 1
Bifidobacterium_animalis_subsp._animalis_ATCC_25527 2
Bifidobacterium_animalis_subsp._lactis_Bl12 2
Bifidobacterium_animalis_subsp._lactis_B420 2
Bifidobacterium_animalis_subsp._lactis_ATCC_27673 2
Bifidobacterium_animalis_subsp._lactis_BLC1 2
Bifidobacterium_animalis_subsp._lactis_CNCM_I-2494 2
Bifidobacterium_animalis_subsp._lactis_Bi-07 2
Bifidobacterium_animalis_subsp._lactis_V9 2
Bifidobacterium_animalis_subsp._lactis_DSM_10140 2
Bifidobacterium_animalis_subsp._lactis_BB-12 2
Bifidobacterium_animalis_subsp._lactis_AD011 2
Bifidobacterium_breve_UCC2003 1
Bifidobacterium_asteroides_PRL2011 1
Bifidobacterium_bifidum_PRL2010 2
Bifidobacterium_bifidum_BGN4 2
Actinomyces_graevenitzii_C83_ 3
Actinomyces_odontolyticus_ATCC_17982 3
Actinomyces_viscosus_C505 6
Chthonomonas_calidirosea_T49 1
[Eubacterium]_cylindroides_[Eubacterium]_cylindroides_T2-87 1
Clostridium_thermocellum_DSM_1313 1
[Clostridium]_stercorarium_Clostridiu_subsp._stercorarium_DSM_8532 1
Faecalibacterium_prausnitzii_L2-6 4
Desulfosporosinus_meridiei_DSM_13257 1
Desulfitobacterium_dichloroeliminans_LMG_P-21439 1
Desulfitobacterium_hafniense_DCB-2 1
Desulfotomaculum_gibsoniae_DSM_7213 1
Coprococcus_catus_GD/7 2
Roseburia_intestinalis_XB6B4 1
Clostridium_sp._SY8519 1
Clostridium_saccharobutylicum_DSM_13864 1
Clostridium_saccharoperbutylacetonicum_N1-4(HMT) 1
Clostridium_acetobutylicum_DSM_1731 2
Clostridium_acetobutylicum_EA_2018 2
Thermacetogenium_phaeum_DSM_12270 1
Halobacteroides_halobius_DSM_5150 1
Thermobacillus_composti_KWC4 1
Paenibacillus_sp._Y412MC10 1
Paenibacillus_mucilaginosus_KNP414 1
Paenibacillus_mucilaginosus_K02 1
Paenibacillus_larvae_subsp._larvae_DSM_25430 1
Paenibacillus_polymyxa_CR1 1
Paenibacillus_polymyxa_SC2 2
Paenibacillus_polymyxa_E681 2
Bacillus_thuringiensis_HD-789 1
Chlamydia_pecorum_P787 0
Chlamydia_pecorum_W73 0
Chlamydia_pecorum_PV3056/3 0
Chlamydophila_pneumoniae_LPCoLN 0
Chlamydophila_pneumoniae_J138 0
Chlamydophila_pneumoniae_CWL029 0
Chlamydophila_pneumoniae_AR39 0
Chlamydia_psittaci_01DC12 0
Chlamydia_psittaci_WC 0
Chlamydia_psittaci_M56 0
Chlamydia_psittaci_WS/RT/E30 0
Chlamydia_psittaci_VS225 0
Chlamydia_psittaci_MN 0
Chlamydia_psittaci_GR9 0
Chlamydia_psittaci_84/55 0
Chlamydia_psittaci_08DC60 0
Chlamydia_psittaci_02DC15 0
Chlamydia_psittaci_C19/98 0
Chlamydia_psittaci_NJ1 0
Chlamydia_psittaci_CP3 0
Chlamydophila_psittaci_RD1 0
Chlamydia_psittaci_Mat116 0
Chlamydophila_psittaci_6BC 0
Chlamydophila_psittaci_6BC 0
Chlamydia_trachomatis_C/TW-3 0
Chlamydia_trachomatis_L2/434/Bu(f) 0
Chlamydia_trachomatis_L2/434/Bu(i) 0
Chlamydia_trachomatis_IU888 0
Chlamydia_trachomatis_IU824 0
Chlamydia_trachomatis_L2b/Canada2 0
Chlamydia_trachomatis_L2b/Canada1 0
Chlamydia_trachomatis_L3/404/LN 0
Chlamydia_trachomatis_L2b/Ams5 0
Chlamydia_trachomatis_L2b/Ams4 0
Chlamydia_trachomatis_L2b/Ams3 0
Chlamydia_trachomatis_L2b/Ams2 0
Chlamydia_trachomatis_L2b/Ams1 0
Chlamydia_trachomatis_L2b/795 0
Chlamydia_trachomatis_L2b/CV204 0
Chlamydia_trachomatis_L2b/LST 0
Chlamydia_trachomatis_L2b/UCH-2 0
Chlamydia_trachomatis_L2b/8200/07 0
Chlamydia_trachomatis_L2/25667R 0
Chlamydia_trachomatis_L1/224 0
Chlamydia_trachomatis_L1/115 0
Chlamydia_trachomatis_L1/440/LN 0
Chlamydia_trachomatis_K/SotonK1 0
Chlamydia_trachomatis_Ia/SotonIa3 0
Chlamydia_trachomatis_Ia/SotonIa1 0
Chlamydia_trachomatis_G/SotonG1 0
Chlamydia_trachomatis_F/SotonF3 0
Chlamydia_trachomatis_F/SW5 0
Chlamydia_trachomatis_F/SW4 0
Chlamydia_trachomatis_E/SotonE8 0
Chlamydia_trachomatis_E/SotonE4 0
Chlamydia_trachomatis_E/SW3 0
Chlamydia_trachomatis_D/SotonD6 0
Chlamydia_trachomatis_D/SotonD5 0
Chlamydia_trachomatis_D/SotonD1 0
Chlamydia_trachomatis_A/5291 0
Chlamydia_trachomatis_A/363 0
Chlamydia_trachomatis_RC-J/971 0
Chlamydia_trachomatis_RC-L2/55 0
Chlamydia_trachomatis_J/6276tet1 0
Chlamydia_trachomatis_RC-J/966 0
Chlamydia_trachomatis_RC-J(s)/122 0
Chlamydia_trachomatis_RC-F(s)/342 0
Chlamydia_trachomatis_RC-L2(s)/3 0
Chlamydia_trachomatis_RC-J/953 0
Chlamydia_trachomatis_RC-J943 0
Chlamydia_trachomatis_RC-Fs852 0
Chlamydia_trachomatis_RC-L2s46 0
Chlamydia_trachomatis_RC-F69 0
Chlamydia_trachomatis_L2c 0
Chlamydia_trachomatis_D-LC 0
Chlamydia_trachomatis_D-EC 0
Chlamydia_trachomatis_G/9301 0
Chlamydia_trachomatis_G/11074 0
Chlamydia_trachomatis_G/11222 0
Chlamydia_trachomatis_G/9768 0
Chlamydia_trachomatis_E/150 0
Chlamydia_trachomatis_E/11023 0
Chlamydia_trachomatis_B/TZ1A828/OT 0
Chlamydia_trachomatis_Sweden2 0
Chlamydia_trachomatis_E/Bour 0
Chlamydia_trachomatis_A2497 0
Chlamydia_trachomatis_A2497 0
Chlamydia_trachomatis_L2b/UCH-1/proctitis 0
Chlamydia_trachomatis_434/Bu 0
Chlamydia_trachomatis_A/HAR-13 0
Chlamydia_trachomatis_D/UW-3/CX 0
Singulisphaera_acidiphila_DSM_18658 1
Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._JB197 1
Leptospira_interrogans_serovar_Lai_str._56601 1
Leptospira_interrogans_serovar_Copenhageni_str._Fiocruz_L1-130 1
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Ames)' 1
Spirochaeta_thermophila_DSM_6578 1
Sorangium_cellulosum_So0157-2 2
Anaeromyxobacter_sp._K 2
Anaeromyxobacter_dehalogenans_2CP-C 2
Myxococcus_stipitatus_DSM_14675 4
Burkholderia_lata 0
Rhodobacter_sphaeroides_ATCC_17025 0
Hyphomicrobium_nitrativorans_NL23 2
Hyphomicrobium_denitrificans_1NES1 2
Stenotrophomonas_maltophilia_D457 1
Stenotrophomonas_maltophilia_JV3 1
Stenotrophomonas_maltophilia_R551-3 1
Xylella_fastidiosa_subsp._fastidiosa_GB514 1
Xylella_fastidiosa_M12 1
Xylella_fastidiosa_Temecula1 1
Xylella_fastidiosa_9a5c 1
Xanthomonas_citri_subsp._citri_Aw12879 1
Xanthomonas_campestris_pv._vesicatoria_str._85-10 1
Xanthomonas_axonopodis_pv._citrumelo_F1 1
Xanthomonas_oryzae_pv._oryzicola_BLS256 1
Xanthomonas_oryzae_pv._oryzae_MAFF_311018 1
Xanthomonas_oryzae_pv._oryzae_KACC_10331 1
Xanthomonas_campestris_pv._raphani_756C 1
Xanthomonas_campestris_pv._campestris_str._8004 1
Xanthomonas_campestris_pv._campestris_str._ATCC_33913 1
Sulfolobus_islandicus_LAL14/1 1
Sulfolobus_islandicus_REY15A 1
Sulfolobus_islandicus_HVE10/4 1
Sulfolobus_islandicus_Y.G.57.14 1
Sulfolobus_islandicus_L.S.2.15 1
Sulfolobus_islandicus_M.16.27 1
Sulfolobus_islandicus_M.14.25 1
Sulfolobus_islandicus_M.16.4 1
Sulfolobus_islandicus_L.D.8.5 1
Sulfolobus_solfataricus_98/2 1
Sulfolobus_acidocaldarius_SUSAZ 1
Sulfolobus_acidocaldarius_Ron12/I 1
Sulfolobus_acidocaldarius_N8 1
Haloarcula_hispanica_N601 1

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   2
Pan_troglodytes_69_2.1.4   (Chimpanzee)   2
Gorilla_gorilla_69_3.1   (Western gorilla)   2
Pongo_abelii_69_2   (Sumatran orangutan)   3
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   2
Macaca_mulatta_69_1   (Rhesus monkey)   2
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   2
Otolemur_garnettii_69_3   (Small-eared galago)   2
Microcebus_murinus_69_1   (Gray mouse lemur)   1
Rattus_norvegicus_69_3.4   (Norway rat)   3
Mus_musculus_69_38   (House mouse)   2
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   3
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   2
Cavia_porcellus_69_3   (Domestic guinea pig)   3
Oryctolagus_cuniculus_69_2   (Rabbit)   3
Ochotona_princeps_69   (American pika)   4
Tupaia_belangeri_69   (Northern tree shrew)   1
Sus_scrofa_69_10.2   (Pig)   2
Bos_taurus_69_3.1   (Cattle)   2
Vicugna_pacos_69_1   (Alpaca)   2
Tursiops_truncatus_69_1   (Bottlenose dolphin)   4
Mustela_putorius_furo_69_1.0   (Domestic ferret)   2
Ailuropoda_melanoleuca_69_1   (Giant panda)   3
Canis_familiaris_69_3.1   (Dog)   2
Felis_catus_69   (Domestic cat)   3
Equus_caballus_69_2   (Horse)   2
Myotis_lucifugus_69_2.0   (Little brown bat)   3
Pteropus_vampyrus_69_1   (Large flying fox)   2
Sorex_araneus_69_1   (European shrew)   2
Erinaceus_europaeus_69   (Western European hedgehog)   5
Procavia_capensis_69_1   (Cape rock hyrax)   3
Loxodonta_africana_69_3   (African savanna elephant)   3
Echinops_telfairi_69   (Small Madagascar hedgehog)   4
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   1
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   1
Macropus_eugenii_69_1.0   (Tammar wallaby)   2
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   4
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   2
Ornithorhynchus_anatinus_69_5   (Platypus)   1
Petromyzon_marinus_69_7.0   (Sea lamprey)   1
Meleagris_gallopavo_69_2   (Turkey)   5
Gallus_gallus_69_2   (Chicken)   3
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   2
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   1
Anolis_carolinensis_69_2.0   (Green anole)   5
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   2
Latimeria_chalumnae_69_1   (Coelacanth)   2
Gadus_morhua_69_1   (Atlantic cod)   1
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   2
Takifugu_rubripes_69_4   (Torafugu)   2
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   3
Oryzias_latipes_69_1   (Japanese medaka)   2
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   3
Oreochromis_niloticus_69_1.0   (Nile tilapia)   2
Danio_rerio_69_9   (Zebrafish)   3
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   3
Ciona_intestinalis_69   (Vase tunicate)   4
Drosophila_melanogaster_69_5   (Fruit fly)   2
Caenorhabditis_elegans_69_215   (Roundworm)   3
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   1
Arabidopsis_thaliana_10   (Thale cress)   5

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   21
Homo_sapiens__(NCBI_version)   (Human)   8
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   2
Heliconius_numata__(Incomplete) 1
Loa_loa_v3.3_(Request)   (Eye worm)   3
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   5
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   4
Picea_sitchensis__(Incomplete)   (Sitka spruce)   4
Lotus_japonicus__(Early_assembly) 3
Malus_x_domestica_(Duplicate)   (Apple)   5
Ricinus_communis__(Early_assembly)   (Castor bean)   4
Nicotiana_benthamiana_0.4.4_(Early_draft) 3
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   3
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   3
Phoenix_dactylifera__(Early_draft)   (Date palm)   2
Mycobacterium_tuberculosis_H37Rv_(Duplicate_of_ex) 1
NCBI_plasmid_sequences_(Plasmids) 5
Protozoadb_2010_08_(Protozoadb) 59
Protein_Data_Bank_(all_PDB_sequenc) 19
STRING_v9.0.5_(STRING) 542
NCBI_viral_sequences_(Viral) 2
UniProt__viral_sequences_(Viral) 5
Uniprot_2018_03_genome 36060
NCBI_2017_08_genome 24659
TargetDB__(Targets) 27
PDB_chains_(SCOP_1.75)_(PDB) 2
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 7

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.