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  Home > SCOP hierarchy > Domain combination - _gap_,49899,_gap_

Domain combinations for _gap_,49899,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

49899 - Concanavalin A-like lectins/glucanases

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   13
Pan_troglodytes_76_2.1.4   (Chimpanzee)   2
Gorilla_gorilla_76_3.1   (Western gorilla)   4
Pongo_abelii_76_2   (Sumatran orangutan)   4
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   6
Papio_anubis_76   (Olive baboon)   3
Macaca_mulatta_76_1   (Rhesus monkey)   6
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   8
Otolemur_garnettii_76_3   (Small-eared galago)   3
Microcebus_murinus_76_1   (Gray mouse lemur)   1
Rattus_norvegicus_76_5.0   (Norway rat)   5
Mus_musculus_76_38   (House mouse)   15
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   4
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   3
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   2
Cavia_porcellus_76_3   (Domestic guinea pig)   1
Oryctolagus_cuniculus_76_2   (Rabbit)   5
Ochotona_princeps_76   (American pika)   4
Tupaia_belangeri_76   (Northern tree shrew)   3
Sus_scrofa_76_10.2   (Pig)   3
Bos_taurus_76_3.1   (Cattle)   2
Ovis_aries_76_3.1   (Sheep)   5
Vicugna_pacos_76_1   (Alpaca)   2
Tursiops_truncatus_76_1   (Bottlenose dolphin)   2
Mustela_putorius_furo_76_1.0   (Domestic ferret)   5
Ailuropoda_melanoleuca_76_1   (Giant panda)   3
Canis_familiaris_76_3.1   (Dog)   3
Felis_catus_76_6.2   (Domestic cat)   1
Equus_caballus_76_2   (Horse)   1
Myotis_lucifugus_76_2.0   (Little brown bat)   5
Pteropus_vampyrus_76_1   (Large flying fox)   4
Sorex_araneus_76_1   (European shrew)   3
Erinaceus_europaeus_76   (Western European hedgehog)   1
Procavia_capensis_76_1   (Cape rock hyrax)   6
Loxodonta_africana_76_3   (African savanna elephant)   2
Echinops_telfairi_76   (Small Madagascar hedgehog)   3
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   6
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   3
Macropus_eugenii_76_1.0   (Tammar wallaby)   3
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   5
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   3
Ornithorhynchus_anatinus_76_5   (Platypus)   2
Saccoglossus_kowalevskii_v3.0 13
Petromyzon_marinus_76_7.0   (Sea lamprey)   3
Meleagris_gallopavo_76_2   (Turkey)   3
Gallus_gallus_76_4   (Chicken)   3
Anas_platyrhynchos_76_1.0   (Mallard)   1
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   2
Ficedula_albicollis_76_1.0   (Collared flycatcher)   3
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   6
Anolis_carolinensis_76_2.0   (Green anole)   7
Xenopus_laevis_   (African clawed frog)   4
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   4
Latimeria_chalumnae_76_1   (Coelacanth)   9
Lepisosteus_oculatus_76   (Spotted gar)   4
Gadus_morhua_76_1   (Atlantic cod)   1
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   1
Takifugu_rubripes_76_4   (Torafugu)   7
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   3
Oryzias_latipes_76_1   (Japanese medaka)   4
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   6
Poecilia_formosa_76   (Amazon molly)   6
Oreochromis_niloticus_76_1.0   (Nile tilapia)   9
Astyanax_mexicanus_76   (Mexican tetra)   5
Danio_rerio_76_9   (Zebrafish)   8
Oikopleura_dioica 3
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   2
Ciona_intestinalis_76   (Vase tunicate)   3
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   6
Adineta_vaga 4
Octopus_bimaculoides_280 9
Crassostrea_gigas_22   (Pacific oyster)   7
Lottia_gigantea_   (Owl limpet)   2
Helobdella_robusta_ 4
Capitella_sp._I_ 7
Danaus_plexippus_OGS1.0   (Monarch butterfly)   4
Heliconius_melpomene_   (Postman butterfly)   3
Bombyx_mori_   (Domestic silkworm)   2
Nasonia_vitripennis_   (Jewel wasp)   3
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   1
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   1
Linepithema_humile_v1.1   (Argentine ant)   1
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   1
Solenopsis_invicta_v.2.2.3   (Red fire ant)   2
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   3
Atta_cephalotes_v1.1 4
Camponotus_floridanus_v3.3   (Florida carpenter ant)   1
Lucilia_cuprina   (Australian sheep blowfly)   4
Drosophila_grimshawi_1.3 3
Drosophila_willistoni_1.3 4
Drosophila_pseudoobscura_2.13 4
Drosophila_persimilis_1.3 2
Drosophila_suzukii 6
Drosophila_yakuba_1.3 5
Drosophila_simulans_1.3 4
Drosophila_sechellia_1.3 4
Drosophila_melanogaster_76_5   (Fruit fly)   6
Drosophila_erecta_1.3 4
Drosophila_ananassae_1.3 5
Drosophila_virilis_1.2 4
Drosophila_mojavensis_1.3 3
Megaselia_scalaris_22 1
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   5
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   8
Anopheles_darlingi_22   (American malaria mosquito)   1
Anopheles_gambiae_49_3j   (African malaria mosquito)   9
Tribolium_castaneum_3.0   (Red flour beetle)   3
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   3
Acyrthosiphon_pisum_   (Pea aphid)   2
Rhodnius_prolixus_22 1
Daphnia_pulex_   (Common water flea)   6
Strigamia_maritima_22 1
Sarcoptes_scabiei 3
Tetranychus_urticae_   (Two-spotted spider mite)   1
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   4
Pristionchus_pacificus_ 2
Meloidogyne_incognita_   (Southern root-knot nematode)   12
Meloidogyne_hapla_ 4
Onchocerca_volvulus_22 1
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   1
Caenorhabditis_japonica_ 3
Caenorhabditis_brenneri_ 5
Caenorhabditis_remanei_ 3
Caenorhabditis_elegans_76_235   (Roundworm)   2
Caenorhabditis_briggsae_2 1
Trichinella_spiralis_22 2
Hymenolepis_microstoma_ 2
Echinococcus_multilocularis_ 2
Echinococcus_granulosus_ 2
Taenia_solium_   (Pork tapeworm)   2
Schistosoma_mansoni_ 2
Mnemiopsis_leidyi   (Sea walnut)   4
Thelohanellus_kitauei 1
Acropora_digitifera_v1.0 4
Nematostella_vectensis_1.0   (Starlet sea anemone)   5
Hydra_vulgaris 1
Amphimedon_queenslandica 7
Trichoplax_adhaerens_ 5
Proterospongia_sp._ATCC_50818_ 1
Monosiga_brevicollis_ 3
Sphaeroforma_arctica_JP610_ 2
Capsaspora_owczarzaki_ATCC_30864_ 0
Conidiobolus_coronatus_NRRL28638_v1.0 4
Mortierella_verticillata_NRRL_6337_ 6
Phycomyces_blakesleeanus_ 0
Rhizopus_oryzae_RA_99-880_ 5
Mucor_circinelloides_ 2
Rhizomucor_miehei_CAU432_ 5
Malassezia_globosa_CBS_7966_ 10
Sporisorium_reilianum_22 17
Ustilago_maydis_ 19
Mixia_osmundae_IAM_14324_v1.0 10
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 13
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 19
Melampsora_laricis-populina_ 17
Rhodotorula_graminis_WP1_v1.0 9
Sporobolomyces_roseus_IAM_13481_ 8
Microbotryum_violaceum_22 6
Wallemia_sebi_v1.0 8
Sphaerobolus_stellatus_v1.0 13
Piloderma_croceum_F_1598_v1.0 8
Serpula_lacrymans_var._lacrymans_S7.9_ 11
Coniophora_puteana 13
Hydnomerulius_pinastri_v2.0 10
Paxillus_rubicundulus_Ve08.2h10_v1.0 12
Pisolithus_microcarpus_441_v1.0 10
Pisolithus_tinctorius_Marx_270_v1.0 9
Scleroderma_citrinum_Foug_A_v1.0 10
Coprinopsis_cinerea_okayama7_130_v3 20
Pleurotus_ostreatus_   (Oyster mushroom)   17
Amanita_thiersii_Skay4041_v1.0 9
Amanita_muscaria_Koide_v1.0   (Fly agaric)   9
Galerina_marginata_v1.0 16
Hebeloma_cylindrosporum_h7_v2.0 16
Laccaria_bicolor_S238N-H82_ 13
Agaricus_bisporus_var._bisporus_ 14
Schizophyllum_commune_ 11
Stereum_hirsutum_FP-91666_SS1__v1.0 10
Heterobasidion_annosum_ 9
Gloeophyllum_trabeumv1.0 11
Punctularia_strigosozonata_v1.0 12
Sebacina_vermifera_MAFF_305830_v1.0 19
Fomitiporia_mediterranea_v1.0 16
Tulasnella_calospora_AL13/4D_v1.0 14
Postia_placenta_ 13
Wolfiporia_cocos_MD-104_SS10__v1.0 10
Fomitopsis_pinicolav1.0 11
Fomitopsis_pinicola_FP-58527_SS1_v3.0 11
Phanerochaete_chrysosporium_RP-78_2.1 8
Dichomitus_squalens 14
Trametes_versicolor_v1.0 16
Tremella_mesenterica_   (Witches' butter)   8
Daldinia_eschscholzii_EC12_v1.0 8
Apiospora_montagnei_NRRL_25634_v1.0 9
Magnaporthe_poae_ATCC_64411_22 10
Magnaporthe_grisea_70-15_ 12
Podospora_anserina_ 12
Sporotrichum_thermophile_ATCC_42464_ 9
Thielavia_terrestris_NRRL_8126_ 7
Chaetomium_globosum_CBS_148.51_ 11
Neurospora_tetrasperma_ 12
Neurospora_discreta_FGSC_8579_ 10
Neurospora_crassa_OR74A_ 10
Cryphonectria_parasitica_   (Chestnut blight fungus)   11
Verticillium_albo-atrum_VaMs.102_ 7
Verticillium_dahliae_VdLs.17_ 8
Acremonium_alcalophilumv_1.0 8
Glomerella_graminicola_22 12
Fusarium_graminearum_ 7
Nectria_haematococca_mpVI_ 10
Fusarium_oxysporum_f._sp._lycopersici_4286_ 8
Fusarium_verticillioides_7600_ 10
Trichoderma_asperellum_CBS_433.97_v1.0 7
Trichoderma_atroviride_ 5
Trichoderma_citrinoviride_v1.0 7
Trichoderma_reesei_1.2 6
Trichoderma_virens_Gv29-8_ 6
Trichoderma_longibrachiatum_ATCC_18648_v1.0 5
Trichoderma_harzianum_CBS_226.95_v1.0 6
Amorphotheca_resinae_v1.0   (Creosote fungus)   6
Botrytis_cinerea_B05.10_ 13
Sclerotinia_sclerotiorum_ 13
Blumeria_graminis_22 5
Didymella_exigua_CBS_183.55_v1.0 13
Leptosphaeria_maculans_22 14
Setosphaeria_turcica_v1.0 15
Cochliobolus_miyabeanus_ATCC_44560_v1.0 17
Cochliobolus_victoriae_FI3_v1.0 17
Cochliobolus_carbonum_26-R-13_v1.0 17
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   15
Alternaria_brassicicola_ 14
Cochliobolus_lunatus_m118_v2.0 14
Pyrenophora_teres_f._teres_22 14
Pyrenophora_tritici-repentis_ 14
Stagonospora_nodorum_ 16
Mycosphaerella_graminicola_IPO323_ 6
Zasmidium_cellare_ATCC_36951_v1.0 10
Dothistroma_septosporum 11
Septoria_musiva_v1.0 7
Mycosphaerella_fijiensis_CIRAD86_ 8
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 10
Paracoccidioides_brasiliensis_Pb18_ 4
Coccidioides_posadasii_RMSCC_3488_ 6
Coccidioides_immitis_RS_ 7
Ajellomyces_dermatitidis_SLH14081_ 5
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 5
Microsporum_canis_CBS_113480_ 5
Trichophyton_equinum_CBS_127.97_ 5
Trichophyton_verrucosum_HKI_0517_ 5
Arthroderma_benhamiae_CBS_112371_ 5
Trichophyton_tonsurans_CBS_112818_ 6
Trichophyton_rubrum_CBS_118892_ 6
Uncinocarpus_reesii_1704_ 5
Aspergillus_zonatus_v1.0 10
Penicillium_chrysogenum_Wisconsin_54-1255_ 8
Penicillium_chrysogenum_v1.0 8
Aspergillus_acidus_v1.0 10
Aspergillus_fumigatus_Af293 9
Aspergillus_brasiliensis_v1.0 9
Aspergillus_nidulans_FGSC_A4_ 10
Aspergillus_sydowii_v1.0 10
Aspergillus_versicolor_v1.0 8
Aspergillus_glaucus 6
Aspergillus_carbonarius_ITEM_5010_ 8
Neosartorya_fischeri_NRRL_181_ 9
Aspergillus_terreus_NIH2624_ 6
Aspergillus_tubingensis_v1.0 8
Aspergillus_wentii_v1.0 12
Aspergillus_oryzae_RIB40_ 10
Aspergillus_niger_22 10
Aspergillus_niger_ATCC_1015_ 6
Aspergillus_flavus_NRRL3357_ 11
Aspergillus_clavatus_NRRL_1_ 10
Penicillium_marneffei_ATCC_18224_ 9
Tuber_melanosporum_Mel28_22 5
Tuber_melanosporum_Vittad_   (Perigord truffle)   5
Hansenula_polymorpha_v2.0 4
Dekkera_bruxellensis_CBS_2499_v2.0 2
Pichia_membranifaciensv1.0 2
Candida_tanzawaensis_NRRL_Y-17324__v1.0 6
Candida_dubliniensis_CD36_ 8
Candida_tropicalis_MYA-3404_ 8
Candida_parapsilosis_ 9
Candida_albicans_SC5314 8
Lodderomyces_elongisporus_NRRL_YB-4239_ 5
Babjeviella_inositovora_NRRL_Y-12698_v1.0 6
Pichia_stipitis_CBS_6054_ 6
Candida_guilliermondii_ATCC_6260_ 4
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 7
Debaromyces_hansenii 9
Wickerhamomyces_anomalus 6
Pichia_pastoris_GS115_ 6
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 2
Yarrowia_lipolytica_CLIB122 5
Candida_lusitaniae_ATCC_42720_ 6
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 5
Vanderwaltozyma_polyspora_DSM_70294_ 9
Candida_glabrata_CBS138 8
Kluyveromyces_thermotolerans_CBS_6340 7
Lachancea_kluyveri_ 7
Kluyveromyces_waltii 7
Ashbya_gossypii_ATCC_10895_ 7
Zygosaccharomyces_rouxii_ 8
Saccharomyces_mikatae_MIT 7
Saccharomyces_paradoxus_MIT 8
Saccharomyces_cerevisiae_76   (Baker's yeast)   8
Saccharomyces_bayanus_MIT 7
Kluyveromyces_lactis 5
Schizosaccharomyces_cryophilus_OY26_22 4
Schizosaccharomyces_octosporus_yFS286_ 3
Schizosaccharomyces_japonicus_yFS275_ 3
Schizosaccharomyces_pombe   (Fission yeast)   3
Catenaria_anguillulae_PL171_v1.0 5
Allomyces_macrogynus_ATCC_38327_ 11
Spizellomyces_punctatus_DAOM_BR117_ 2
Dictyostelium_discoideum 5
Dictyostelium_purpureum_ 4
Entamoeba_dispar_1.2 2
Entamoeba_invadens_1.2 2
Entamoeba_histolytica_1 1
Selaginella_moellendorffii_ 2
Pinus_taeda   (Loblolly pine)   10
Picea_abies   (Norway spruce)   7
Eucalyptus_grandis_v201   (Rose gum)   12
Theobroma_cacao_B97-61/B2_v1   (Cacao)   9
Gossypium_raimondii_v221 26
Citrus_clementina_v165 20
Citrus_sinensis_v154   (Sweet orange)   21
Thellungiella_halophila_v173 9
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   11
Capsella_rubella_v183 9
Arabidopsis_lyrata_   (Lyrate rockcress)   9
Arabidopsis_thaliana_10   (Thale cress)   11
Carica_papaya_   (Papaya)   6
Medicago_truncatula_   (Barrel medic)   13
Phaseolus_vulgaris_v186   (French bean)   14
Glycine_max_v109   (Soybean)   22
Cucumis_sativus_v122   (Cucumber)   10
Fragaria_vesca_   (Wild strawberry)   8
Malus_domestica_v196   (Apple)   17
Prunus_persica_v139   (Peach)   9
Linum_usitatissimum_v200   (Flax)   11
Manihot_esculenta_v147   (Cassava)   14
Populus_trichocarpa_v156   (Black cottonwood)   13
Vitis_vinifera_   (Wine grape)   5
Mimulus_guttatus_v140   (Spotted monkey flower)   12
Solanum_lycopersicum_v.2.3   (Tomato)   11
Solanum_tuberosum_   (Potato)   17
Actinidia_chinensis_Hongyang_ 12
Aquilegia_coerulea_v195 16
Triticum_urartu_22 4
Triticum_aestivum_22   (Bread wheat)   13
Aegilops_tauschii_22 3
Brachypodium_distachyon_   (Stiff brome)   14
Oryza_barthii_22   (African wild rice)   10
Oryza_meridionalis_22 19
Oryza_glumaepatula_22 14
Oryza_glaberrima   (African rice)   12
Oryza_punctata_22 18
Oryza_nivara_22 19
Oryza_brachyantha_22   (Malo sina)   5
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   19
Oryza_sativa_v193   (Rice)   19
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   11
Panicum_virgatum_v202   (Switchgrass)   17
Setaria_italica_v164   (Foxtail millet)   13
Zea_mays_subsp._mays_   (Maize)   16
Zea_mays_v181   (Maize)   16
Sorghum_bicolor_   (Sorghum)   15
Musa_balbisiana   (Balbis banana)   19
Musa_acuminata_22   (Wild Malaysian banana)   17
Amborella_trichopoda_22 6
Physcomitrella_patens 7
Coccomyxa_subellipsoidea_sp._C-169_v2 0
Asterochloris_sp._Cgr/DA1pho_v1.0 1
Chlorella_variabilis_sp._NC64A_ 5
Volvox_carteri_f._nagariensis_ 2
Volvox_carteri_v199 1
Chlamydomonas_reinhardtii_4.0 3
Ostreococcus_sp._RCC809_ 5
Ostreococcus_lucimarinus_CCE9901_ 3
Ostreococcus_tauri_ 4
Bathycoccus_prasinos_ 5
Micromonas_sp._RCC299_ 3
Micromonas_pusilla_CCMP1545_v3.0 2
Cyanidioschyzon_merolae_strain_10D_22 2
Cyanidioschyzon_merolae 2
Porphyridium_purpureum_02_2012 3
Thecamonas_trahens_ATCC_50062_ 0
Bigelowiella_natans_CCMP2755_22 14
Giardia_lamblia_2.3 1
Cyanophora_paradoxa_ 5
Leishmania_mexicana_2.4 2
Leishmania_major_strain_Friedlin_ 2
Leishmania_infantum_JPCM5_2.4 2
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 3
Trypanosoma_vivax_ 3
Trypanosoma_cruzi_strain_CL_Brener 11
Trypanosoma_congolense_2.4 6
Trypanosoma_brucei_gambiense_v4.1 2
Trypanosoma_brucei_TREU927_v4.1 2
Ectocarpus_siliculosus 3
Aureococcus_anophagefferens_ 6
Albugo_laibachii_22 8
Pythium_iwayamai_DAOM_BR242034_22 9
Pythium_arrhenomanes_ATCC_12531_22 8
Pythium_ultimum_v1.7-2 11
Pythium_aphanidermatum_DAOM_BR444_22 11
Pythium_irregulare_DAOM_BR486_22 14
Pythium_vexans_DAOM_BR484_22 16
Phytophthora_ramorum_1.1   (Sudden oak death agent)   15
Phytophthora_sojae_1.1 29
Phytophthora_infestans_T30-4_ 17
Phytophthora_capsici_ 19
Hyaloperonospora_arabidopsidis_22 9
Phaeodactylum_tricornutumCCAP_1055/1 8
Fragilariopsis_cylindrus 1
Thalassiosira_pseudonana_CCMP1335 8
Perkinsus_marinus_ATCC_50983_ 2
Paramecium_tetraurelia_ 8
Tetrahymena_thermophila_SB210_1_ 1
Ichthyophthirius_multifiliis_strain_G5_ 2
Cryptosporidium_hominis 0
Cryptosporidium_muris 2
Cryptosporidium_parvum_Iowa_II 0
Neospora_caninum 3
Toxoplasma_gondii_VEG 3
Toxoplasma_gondii_ME49 3
Toxoplasma_gondii_GT1 2
Theileria_parva__ 1
Theileria_annulata 1
Plasmodium_falciparum_3D7_ 2
Plasmodium_vivax_SaI-1_7.0 2
Plasmodium_knowlesi_strain_H_ 2
Plasmodium_yoelii_ssp._yoelii_1_ 2
Plasmodium_chabaudi_ 2
Plasmodium_berghei_ANKA_ 2
Symbiodinium_minutum_clade_B1_v1.2 27
Naegleria_gruberi_ 3
Trichomonas_vaginalis_ 9
Guillardia_theta_CCMP2712_v1.0_ 14
Emiliania_huxleyi_CCMP1516_ 16
Leptolyngbya_sp._PCC_7376 0
Pseudanabaena_sp._PCC_7367 0
Synechocystis_sp._PCC_6803 0
Synechococcus_sp._PCC_6312 0
Microcoleus_sp._PCC_7113 1
Gloeocapsa_sp._PCC_7428 1
Halothece_sp._PCC_7418 0
Rivularia_sp._PCC_7116 0
Nostoc_punctiforme_PCC_73102 1
Nostoc_sp._PCC_7524 0
Conexibacter_woesei_DSM_14684 2
Eggerthella_lenta_DSM_2243 0
Catenulispora_acidiphila_DSM_44928 0
Stackebrandtia_nassauensis_DSM_44728 0
Frankia_sp._EAN1pec 1
Frankia_alni_ACN14a 0
Streptosporangium_roseum_DSM_43021 0
Kitasatospora_setae_KM-6054 4
Streptomyces_sp._PAMC26508 0
Streptomyces_flavogriseus_ATCC_33331 1
Streptomyces_sp._SirexAA-E 1
Streptomyces_violaceusniger_Tu_4113 0
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 2
Streptomyces_scabiei_87.22 1
Kribbella_flavida_DSM_17836 0
Salinispora_tropica_CNB-440 0
Verrucosispora_maris_AB-18-032 0
Actinoplanes_sp._N902-109 1
Actinoplanes_sp._SE50/110 0
Mycobacterium_smegmatis_str._MC2_155 0
Corynebacterium_aurimucosum_ATCC_700975 0
Corynebacterium_glutamicum_R 0
Beutenbergia_cavernae_DSM_12333 1
Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382 1
Isoptericola_variabilis_225 0
Cellulomonas_fimi_ATCC_484 1
Bifidobacterium_dentium_Bd1 0
Caldilinea_aerophila_DSM_14535_=_NBRC_104270 1
Dehalococcoides_ethenogenes_195 3
Herpetosiphon_aurantiacus_DSM_785 0
Roseiflexus_sp._RS-1 0
Roseiflexus_castenholzii_DSM_13941 0
Chloroflexus_sp._Y-400-fl 0
Chloroflexus_aggregans_DSM_9485 0
Chloroflexus_aurantiacus_J-10-fl 0
Meiothermus_ruber_DSM_1279 1
Ethanoligenens_harbinense_YUAN-3 1
Pelotomaculum_thermopropionicum_SI 1
Desulfotomaculum_acetoxidans_DSM_771 0
Butyrivibrio_fibrisolvens 0
Syntrophomonas_wolfei_subsp._wolfei_str._Goettingen 1
Heliobacterium_modesticaldum_Ice1 0
Clostridium_perfringens_ATCC_13124 0
Clostridium_cellulovorans_743B 0
Clostridium_acetobutylicum_ATCC_824 0
Caldicellulosiruptor_saccharolyticus_DSM_8903 1
Thermoanaerobacter_mathranii_subsp._mathranii_str._A3 0
Enterococcus_sp._7L76 1
Enterococcus_faecium_Aus0004 1
Enterococcus_faecalis_62 1
Leuconostoc_kimchii_IMSNU_11154 1
Lactobacillus_rhamnosus_Lc_705 1
Lactobacillus_plantarum_JDM1 1
Lactobacillus_brevis_ATCC_367 1
Pediococcus_claussenii_ATCC_BAA-344 2
Lactococcus_lactis_subsp._cremoris_MG1363 0
Streptococcus_parasanguinis_ATCC_15912 1
Streptococcus_salivarius_57.I 2
Paenibacillus_sp._JDR-2 0
Paenibacillus_terrae_HPL-003 1
Paenibacillus_polymyxa_M1 1
Listeria_welshimeri_serovar_6b_str._SLCC5334 1
Bacillus_pseudofirmus_OF4 0
Bacillus_cellulosilyticus_DSM_2522 0
Staphylococcus_epidermidis_RP62A 0
Staphylococcus_aureus_subsp._aureus_JH1 0
Staphylococcus_aureus 0
Candidatus_Cloacamonas_acidaminovorans 1
Ignavibacterium_album_JCM_16511 2
Chlorobium_luteolum_DSM_273 0
Chlorobium_phaeovibrioides_DSM_265 0
Haliscomenobacter_hydrossis_DSM_1100 1
Niastella_koreensis_GR20-10 1
Salinibacter_ruber_M8 1
Rhodothermus_marinus_DSM_4252 2
Flexibacter_litoralis_DSM_6794 1
Cyclobacterium_marinum_DSM_745 0
Marivirga_tractuosa_DSM_4126 2
Fibrella_aestuarina 0
Dyadobacter_fermentans_DSM_18053 0
Cytophaga_hutchinsonii_ATCC_33406 1
Spirosoma_linguale_DSM_74 0
Runella_slithyformis_DSM_19594 0
Prevotella_melaninogenica_ATCC_25845 3
Bacteroides_thetaiotaomicron_VPI-5482 5
Bacteroides_fragilis_YCH46 1
Pedobacter_saltans_DSM_12145 1
Pedobacter_heparinus_DSM_2366 1
Fluviicola_taffensis_DSM_16823 2
Owenweeksia_hongkongensis_DSM_17368 2
Zunongwangia_profunda_SM-A87 0
Krokinobacter_sp._4H-3-7-5 1
Gramella_forsetii_KT0803 1
Lacinutrix_sp._5H-3-7-4 1
Maribacter_sp._HTCC2170 0
Aequorivita_sublithincola_DSM_14238 0
Zobellia_galactanivorans 1
Muricauda_ruestringensis_DSM_13258 2
Cellulophaga_algicola_DSM_14237 2
Cellulophaga_lytica_DSM_7489 2
Polaribacter_sp._MED152 2
Capnocytophaga_canimorsus_Cc5 1
Capnocytophaga_ochracea_DSM_7271 1
Flavobacterium_indicum_GPTSA100-9 0
Flavobacterium_columnare_ATCC_49512 0
Planctomyces_brasiliensis_DSM_5305 2
Planctomyces_limnophilus_DSM_3776 3
Rhodopirellula_baltica_SH_1 1
Pirellula_staleyi_DSM_6068 3
Coraliomargarita_akajimensis_DSM_45221 2
Opitutus_terrae_PB90-1 0
Spirochaeta_smaragdinae_DSM_11293 0
Spirochaeta_caldaria_DSM_7334 0
Treponema_primitia_ZAS-2 0
Treponema_brennaborense_DSM_12168 0
Treponema_paraluiscuniculi_Cuniculi_A 0
Treponema_pallidum_subsp._pallidum_SS14 0
Spirochaeta_thermophila_DSM_6192 1
Denitrovibrio_acetiphilus_DSM_12809 0
Mesotoga_prima_MesG1.Ag.4.2 1
Candidatus_Solibacter_usitatus_Ellin6076 0
candidate_division_WWE3_bacterium_RAAC2_WWE3_1 0
candidate_division_SR1_bacterium_RAAC1_SR1_1 0
Candidatus_Saccharimonas_aalborgensis 1
Nautilia_profundicola_AmH 0
Nitratifractor_salsuginis_DSM_16511 0
uncultured_Sulfuricurvum_sp._RIFRC-1 1
Sulfuricurvum_kujiense_DSM_16994 1
Sulfurimonas_autotrophica_DSM_16294 0
Nitratiruptor_sp._SB155-2 1
Desulfarculus_baarsii_DSM_2075 1
Desulfatibacillum_alkenivorans_AK-01 1
Desulfovibrio_magneticus_RS-1 2
Geobacter_uraniireducens_Rf4 1
Geobacter_lovleyi_SZ 0
Geobacter_metallireducens_GS-15 1
Haliangium_ochraceum_DSM_14365 1
Sorangium_cellulosum_'So_ce_56' 1
Anaeromyxobacter_sp._Fw109-5 0
Stigmatella_aurantiaca_DW4/3-1 4
Corallococcus_coralloides_DSM_2259 1
Myxococcus_fulvus_HW-1 1
Dechloromonas_aromatica_RCB 1
Dechlorosoma_suillum_PS 2
Pseudogulbenkiania_sp._NH8B 1
Chromobacterium_violaceum_ATCC_12472 1
Methylibium_petroleiphilum_PM1 0
Thiomonas_arsenitoxydans 1
Leptothrix_cholodnii_SP-6 1
Burkholderia_rhizoxinica_HKI_454 1
Burkholderia_xenovorans_LB400 1
Cupriavidus_taiwanensis_LMG_19424 1
Cupriavidus_metallidurans_CH34 1
Ralstonia_solanacearum_CFBP2957 1
Burkholderia_vietnamiensis_G4 1
Burkholderia_gladioli_BSR3 1
Verminephrobacter_eiseniae_EF01-2 2
Ramlibacter_tataouinensis_TTB310 0
Delftia_acidovorans_SPH-1 1
Rhodoferax_ferrireducens_T118 1
Acidovorax_citrulli_AAC00-1 2
Herminiimonas_arsenicoxydans 1
Janthinobacterium_sp._Marseille 1
Pusillimonas_sp._T7-7 1
Achromobacter_xylosoxidans 1
Thiobacillus_denitrificans_ATCC_25259 1
Nitrosospira_multiformis_ATCC_25196 1
Sideroxydans_lithotrophicus_ES-1 1
Methylotenera_versatilis_301 2
Methylobacillus_flagellatus_KT 2
Magnetococcus_marinus_MC-1 0
Caulobacter_sp._K31 1
Sphingomonas_sp._MM-1 1
Roseobacter_denitrificans_OCh_114 0
Magnetospirillum_magneticum_AMB-1 1
Azospirillum_lipoferum_4B 0
Micavibrio_aeruginosavorus_ARL-13 0
Candidatus_Puniceispirillum_marinum_IMCC1322 0
alpha_proteobacterium_HIMB5 0
Methylobacterium_sp._4-46 0
Methylobacterium_nodulans_ORS_2060 0
Rhodopseudomonas_palustris_BisA53 1
Bradyrhizobium_japonicum_USDA_110 1
Bradyrhizobium_sp._ORS_278 1
Saccharophagus_degradans_2-40 3
Teredinibacter_turnerae_T7901 2
Cellvibrio_japonicus_Ueda107 2
Aeromonas_veronii_B565 1
Aeromonas_salmonicida_subsp._salmonicida_A449 1
Aeromonas_hydrophila_subsp._hydrophila_ATCC_7966 1
Vibrio_sp._Ex25 1
Vibrio_splendidus_LGP32 2
Vibrio_vulnificus_MO6-24/O 1
Vibrio_cholerae_O395 1
Psychromonas_ingrahamii_37 0
Idiomarina_loihiensis_L2TR 1
Shewanella_piezotolerans_WP3 1
Shewanella_denitrificans_OS217 0
Shewanella_oneidensis_MR-1 1
Shewanella_baltica_OS185 1
Shewanella_woodyi_ATCC_51908 1
Shewanella_sp._MR-4 1
Shewanella_frigidimarina_NCIMB_400 2
Shewanella_putrefaciens_CN-32 1
Pseudoalteromonas_atlantica_T6c 3
Pseudoalteromonas_haloplanktis_TAC125 1
Glaciecola_sp._4H-3-7+YE-5 3
Glaciecola_nitratireducens_FR1064 1
Marinobacter_adhaerens_HP15 1
Marinobacter_hydrocarbonoclasticus_ATCC_49840 1
Marinobacter_aquaeolei_VT8 1
Alteromonas_sp._SN2 1
Alteromonas_macleodii_str._'Deep_ecotype' 0
Hahella_chejuensis_KCTC_2396 2
Marinomonas_mediterranea_MMB-1 1
Methylomicrobium_alcaliphilum 1
Methylomonas_methanica_MC09 1
Methylococcus_capsulatus_str._Bath 1
Stenotrophomonas_maltophilia_K279a 1
Thioalkalivibrio_sulfidophilus_HL-EbGr7 1
Legionella_longbeachae_NSW150 1
Rahnella_sp._Y9602 0
Rahnella_aquatilis_CIP_78.65_=_ATCC_33071 1
Pseudomonas_sp._TKP 1
Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421 1
Pseudomonas_entomophila_L48 1
Pseudomonas_protegens_Pf-5 1
Pseudomonas_fluorescens_SBW25 1
Pseudomonas_aeruginosa_UCBPP-PA14 1
Nanoarchaeum_equitans_Kin4-M 1
Candidatus_Korarchaeum_cryptofilum_OPF8 1
Acidilobus_saccharovorans_345-15 1
Ignisphaera_aggregans_DSM_17230 1
Acidianus_hospitalis_W1 1
Caldivirga_maquilingensis_IC-167 4
Methanocella_paludicola_SANAE 0
Methanosaeta_harundinacea_6Ac 1
Methanosaeta_concilii_GP6 1
Methanococcoides_burtonii_DSM_6242 0
Methanosarcina_acetivorans_C2A 1
Archaeoglobus_profundus_DSM_5631 2
Thermococcus_kodakarensis_KOD1 1
Thermococcus_gammatolerans_EJ3 0
Halogeometricum_borinquense_DSM_11551 0
Halorhabdus_utahensis_DSM_12940 1
Methanocaldococcus_sp._FS406-22 0
Methanocaldococcus_vulcanius_M7 0
Methanocaldococcus_jannaschii_DSM_2661 1
Acholeplasma_laidlawii_PG-8A 0

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   11
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   7
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   9
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   4
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   2
Cryptococcus_neoformans_var._grubii_H99_ 9
Cryptococcus_neoformans_B-3501A_ 12
Cryptococcus_neoformans_JEC21_ 10
Paracoccidioides_brasiliensis_Pb01_ 4
Paracoccidioides_brasiliensis_Pb03_ 3
Coccidioides_posadasii_str._Silveira_ 7
Coccidioides_immitis_RMSCC_3703_ 4
Coccidioides_immitis_RMSCC_2394_ 6
Coccidioides_immitis_H538.4_ 8
Ajellomyces_dermatitidis_ER-3_ 5
Histoplasma_capsulatum_H143 5
Histoplasma_capsulatum_H88 5
Histoplasma_capsulatum_G186AR 5
Aspergillus_fumigatus_A1163_ 9
Candida_albicans_WO-1_ 7
Saccharomyces_cerevisiae_UC5 6
Saccharomyces_cerevisiae_PW5 8
Saccharomyces_cerevisiae_FL100 7
Saccharomyces_cerevisiae_CLIB324 4
Saccharomyces_cerevisiae_CBS7960 8
Saccharomyces_cerevisiae_YJM269 8
Saccharomyces_cerevisiae_T7 8
Saccharomyces_cerevisiae_FostersB 4
Saccharomyces_cerevisiae_FostersO 5
Saccharomyces_cerevisiae_VL3 7
Saccharomyces_cerevisiae_Vin13 8
Saccharomyces_cerevisiae_LalvinQA23 7
Saccharomyces_cerevisiae_AWRI796 3
Saccharomyces_cerevisiae_Sigma1278b 8
Saccharomyces_cerevisiae_W303 8
Saccharomyces_cerevisiae_JAY291 8
Saccharomyces_cerevisiae_AWRI1631 4
Saccharomyces_cerevisiae_YPS163 5
Saccharomyces_cerevisiae_M22 2
Saccharomyces_cerevisiae_T73 3
Saccharomyces_cerevisiae_CLIB215 7
Saccharomyces_cerevisiae_Y10 3
Saccharomyces_cerevisiae_YJM789_ 8
Saccharomyces_cerevisiae_YJM789 8
Saccharomyces_cerevisiae_RM11-1a 8
Saccharomyces_cerevisiae_RM11-1a_ 8
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   8
Schizosaccharomyces_pombe_972h-_ 3
Batrachochytrium_dendrobatidis_JEL423_ 4
Batrachochytrium_dendrobatidis_JAM81_ 3
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   8
Hordeum_vulgare_22   (Domesticated barley)   9
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   12
Trypanosoma_brucei_Lister_427_v4.1 2
Neospora_caninum_Nc-Liverpool_6.2 3
Plasmodium_falciparum_HB3_ 2
Synechocystis_sp._PCC_6803_substr._PCC-P 0
Synechocystis_sp._PCC_6803_substr._PCC-N 0
Synechocystis_sp._PCC_6803_substr._GT-I 0
Synechocystis_sp._PCC_6803 0
Dactylococcopsis_salina_PCC_8305 0
Oscillatoria_nigro-viridis_PCC_7112 0
Arthrospira_platensis_NIES-39 0
Cyanothece_sp._PCC_7822 0
Cyanothece_sp._ATCC_51142 0
Cyanobacterium_aponinum_PCC_10605 0
Pleurocapsa_minor_Pleurocapsa_sp._PCC_7327 1
Stanieria_cyanosphaera_PCC_7437 1
Gordonibacter_pamelaeae_7-10-1-b 0
Streptomyces_rapamycinicus_NRRL_5491 1
Streptomyces_davawensis_JCM_4913 1
Streptomyces_venezuelae_ATCC_10712 0
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 2
Saccharothrix_espanaensis_DSM_44229 0
Actinoplanes_friuliensis_DSM_7358 1
Mycobacterium_smegmatis_str._MC2_155 0
Corynebacterium_halotolerans_YIM_70093_=_DSM_44683 0
Corynebacterium_glutamicum_MB001 0
Corynebacterium_glutamicum_ATCC_13032 0
Corynebacterium_glutamicum_ATCC_13032 0
Corynebacterium_glutamicum_ATCC_13032 0
Clavibacter_michiganensis_subsp._sepedonicus 1
Clavibacter_michiganensis_subsp._nebraskensis_NCPPB_2581 1
Bifidobacterium_longum_subsp._longum_BBMN68 0
Bifidobacterium_longum_subsp._longum_JCM_1217 0
Clostridium_perfringens_str._13 0
Clostridium_botulinum_BKT015925 0
Clostridium_botulinum_B1_str._Okra 1
Clostridium_botulinum_A2_str._Kyoto 1
Clostridium_botulinum_A3_str._Loch_Maree 1
Clostridium_acetobutylicum_DSM_1731 0
Clostridium_acetobutylicum_EA_2018 0
Carnobacterium_maltaromaticum_LMA28 1
Enterococcus_mundtii_QU_25 1
Enterococcus_casseliflavus_EC20 1
Enterococcus_faecium_NRRL_B-2354 1
Enterococcus_faecium_DO 1
Enterococcus_faecalis_str._Symbioflor_1 1
Enterococcus_faecalis_D32 1
Enterococcus_faecalis_OG1RF 1
Enterococcus_faecalis_V583 1
Lactobacillus_paracasei_subsp._paracasei_8700:2 1
Lactobacillus_casei_W56 1
Lactobacillus_rhamnosus_LOCK908 1
Lactobacillus_rhamnosus_ATCC_8530 1
Lactobacillus_plantarum_ZJ316 1
Lactobacillus_plantarum_subsp._plantarum_ST-III 1
Lactobacillus_plantarum_WCFS1 1
Lactobacillus_helveticus_R0052 1
Lactobacillus_delbrueckii_subsp._bulgaricus_ND02 1
Lactobacillus_brevis_KB290 5
Lactococcus_lactis_subsp._lactis_KLDS_4.0325 0
Lactococcus_lactis_subsp._lactis_CV56 0
Lactococcus_lactis_subsp._lactis_KF147 0
Lactococcus_lactis_subsp._cremoris_KW2 0
Lactococcus_lactis_subsp._cremoris_NZ9000 0
Streptococcus_oligofermentans_AS_1.3089 1
Streptococcus_suis_D9 1
Streptococcus_salivarius_CCHSS3 2
Paenibacillus_mucilaginosus_KNP414 1
Paenibacillus_mucilaginosus_K02 1
Paenibacillus_polymyxa_CR1 1
Paenibacillus_polymyxa_SC2 1
Paenibacillus_polymyxa_E681 1
Bacillus_thuringiensis_serovar_finitimus_YBT-020 1
Bacillus_cereus_AH187 1
Bacillus_cereus_G9842 1
Bacillus_cereus_Q1 1
Bacillus_cereus_NC7401 1
Staphylococcus_aureus_subsp._aureus_MSHR1132 0
Staphylococcus_pasteuri_SP1 0
Staphylococcus_warneri_SG1 0
Staphylococcus_aureus_CA-347 0
Staphylococcus_aureus_Bmb9393 0
Staphylococcus_aureus_M1 0
Staphylococcus_aureus_08BA02176 0
Staphylococcus_aureus_ST228/18412 0
Staphylococcus_aureus_ST228/18341 0
Staphylococcus_aureus_ST228/16125 0
Staphylococcus_aureus_ST228/16035 0
Staphylococcus_aureus_ST228/15532 0
Staphylococcus_aureus_ST228/10497 0
Staphylococcus_aureus_ST228/10388 0
Staphylococcus_aureus_04-02981 0
Staphylococcus_aureus_subsp._aureus_Z172 0
Staphylococcus_aureus_subsp._aureus_6850 0
Staphylococcus_aureus_subsp._aureus_SA957 0
Staphylococcus_aureus_subsp._aureus_CN1 0
Staphylococcus_aureus_subsp._aureus_SA40 0
Staphylococcus_aureus_subsp._aureus_11819-97 0
Staphylococcus_aureus_subsp._aureus_M013 1
Staphylococcus_aureus_subsp._aureus_VC40 0
Staphylococcus_aureus_subsp._aureus_T0131 0
Staphylococcus_aureus_subsp._aureus_LGA251 0
Staphylococcus_aureus_subsp._aureus_ECT-R_2 0
Staphylococcus_aureus_subsp._aureus_JKD6159 0
Staphylococcus_aureus_subsp._aureus_ED133 0
Staphylococcus_aureus_subsp._aureus_ED98 0
Staphylococcus_aureus_subsp._aureus_TW20 0
Staphylococcus_aureus_subsp._aureus_55/2053 0
Staphylococcus_aureus_subsp._aureus_TCH60 0
Staphylococcus_aureus_subsp._aureus_str._JKD6008 0
Staphylococcus_aureus_subsp._aureus_71193 0
Staphylococcus_aureus_subsp._aureus_S0385 0
Staphylococcus_aureus_subsp._aureus_str._Newman 0
Staphylococcus_aureus_subsp._aureus_Mu3 0
Staphylococcus_aureus_subsp._aureus_USA300_TCH1516 0
Staphylococcus_aureus_subsp._aureus_USA300_FPR3757 0
Staphylococcus_aureus_subsp._aureus_JH9 0
Staphylococcus_aureus_subsp._aureus_MSSA476 0
Staphylococcus_aureus_subsp._aureus_MRSA252 0
Staphylococcus_aureus_subsp._aureus_MW2 0
Staphylococcus_aureus_subsp._aureus_N315 0
Staphylococcus_aureus_subsp._aureus_Mu50 0
Staphylococcus_aureus_subsp._aureus_COL 0
Staphylococcus_aureus_subsp._aureus_NCTC_8325 0
Salinibacter_ruber_DSM_13855 1
Rhodothermus_marinus_SG0.5JP17-172 2
Echinicola_vietnamensis_DSM_17526 1
Emticicia_oligotrophica_DSM_17448 0
Prevotella_sp._oral_taxon_299_str._F0039 4
Prevotella_dentalis_DSM_3688 1
Alistipes_shahii_WAL_8301 0
Bacteroides_xylanisolvens_XB1A 2
Nonlabens_dokdonensis_DSW-6 4
Psychroflexus_torquis_ATCC_700755 1
Singulisphaera_acidiphila_DSM_18658 2
Leptospira_interrogans_serovar_Copenhageni_str._Fiocruz_L1-130 1
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Ames)' 1
Brachyspira_pilosicoli_WesB 0
Brachyspira_pilosicoli_B2904 0
Brachyspira_pilosicoli_P43/6/78 0
Borrelia_garinii_NMJW1 0
Treponema_pedis_str._T_A4 0
Treponema_pallidum_str._Fribourg-Blanc 0
Treponema_pallidum_subsp._pertenue_str._Gauthier 0
Treponema_pallidum_subsp._pertenue_str._CDC2 0
Treponema_pallidum_subsp._pertenue_str._SamoaD 0
Treponema_pallidum_subsp._pallidum_DAL-1 0
Treponema_pallidum_subsp._pallidum_str._Nichols 0
Spirochaeta_thermophila_DSM_6578 1
Desulfovibrio_hydrothermalis_AM13_=_DSM_14728 2
Geobacter_sp._M18 1
Sorangium_cellulosum_So0157-2 2
Myxococcus_stipitatus_DSM_14675 1
Ralstonia_solanacearum_FQY_4 1
Ralstonia_solanacearum_Po82 1
Ralstonia_solanacearum_PSI07 1
Ralstonia_solanacearum_CMR15 1
Ralstonia_solanacearum_GMI1000 1
Burkholderia_sp._KJ006 1
Burkholderia_thailandensis_MSMB121 1
Burkholderia_pseudomallei_1710b 1
Burkholderia_lata 1
Burkholderia_cenocepacia_J2315 1
Candidatus_Symbiobacter_mobilis_Comamonadaceae_bacterium_CR 0
Achromobacter_xylosoxidans_NBRC_15126_=_ATCC_27061 1
Sulfuricella_denitrificans_skB26 1
Magnetospirillum_gryphiswaldense_MSR-1_v2 0
Micavibrio_aeruginosavorus_EPB 0
Rhodopseudomonas_palustris_HaA2 1
Rhodopseudomonas_palustris_BisB18 2
Rhodopseudomonas_palustris_CGA009 1
Bradyrhizobium_oligotrophicum_S58 2
Simiduia_agarivorans_SA1_=_DSM_21679 2
Aeromonas_hydrophila_ML09-119 1
Vibrio_alginolyticus_NBRC_15630_=_ATCC_17749 1
Vibrio_vulnificus_CMCP6 1
Vibrio_vulnificus_YJ016 1
Vibrio_cholerae_LMA3984-4 1
Vibrio_cholerae_M66-2 1
Vibrio_cholerae_O395 1
Vibrio_cholerae_IEC224 1
Vibrio_cholerae_O1_str._2010EL-1786 1
Vibrio_cholerae_MJ-1236 1
Vibrio_cholerae_O1_biovar_El_Tor_str._N16961 1
Idiomarina_loihiensis_GSL_199 1
Shewanella_sp._W3-18-1 1
Shewanella_sp._ANA-3 1
Shewanella_baltica_BA175 1
Shewanella_baltica_OS678 1
Shewanella_baltica_OS117 1
Shewanella_baltica_OS223 1
Shewanella_baltica_OS195 1
Shewanella_baltica_OS155 1
Shewanella_sp._MR-7 1
Shewanella_putrefaciens_200 1
Glaciecola_psychrophila_170 2
Alteromonas_macleodii_str._'English_Channel_673' 0
Alteromonas_macleodii_str._'Balearic_Sea_AD45' 1
Alteromonas_macleodii_str._'Black_Sea_11' 0
Alteromonas_macleodii_ATCC_27126 1
Alcanivorax_dieselolei_B5 1
Stenotrophomonas_maltophilia_D457 1
Stenotrophomonas_maltophilia_JV3 1
Stenotrophomonas_maltophilia_R551-3 1
Rahnella_aquatilis_HX2 0
Salmonella_enterica_subsp._arizonae_serovar_62:z4,z23:--_str._RSK2980 1
Pseudomonas_stutzeri_CCUG_29243 1
Pseudomonas_stutzeri_DSM_10701 1
Pseudomonas_protegens_CHA0 1
Pseudomonas_fluorescens_F113 1
Pseudomonas_fluorescens_R124 1
Pseudomonas_fluorescens_Pf0-1 1
Pseudomonas_aeruginosa_SCV20265 1
Pseudomonas_aeruginosa_MTB-1 1
Pseudomonas_aeruginosa_LES431 1
Pseudomonas_aeruginosa_RP73 1
Pseudomonas_aeruginosa_B136-33 1
Pseudomonas_aeruginosa_PA1R 1
Pseudomonas_aeruginosa_PA1 1
Pseudomonas_aeruginosa_DK2 1
Pseudomonas_aeruginosa_NCGM2.S1 1
Pseudomonas_aeruginosa_M18 1
Pseudomonas_aeruginosa_LESB58 1
Pseudomonas_aeruginosa_PA7 1
Pseudomonas_aeruginosa_PAO1 1
Candidatus_Nitrosoarchaeum_koreensis_Candidatus_Nitrosopumilus_koreensis_AR1 1
Methanolobus_psychrophilus_R15 1
Archaeoglobus_sulfaticallidus_PM70-1 1
Thermococcus_sp._AM4 0
Halorhabdus_tiamatea_SARL4B 1

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   2
Pan_troglodytes_69_2.1.4   (Chimpanzee)   2
Gorilla_gorilla_69_3.1   (Western gorilla)   3
Pongo_abelii_69_2   (Sumatran orangutan)   4
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   4
Macaca_mulatta_69_1   (Rhesus monkey)   2
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   3
Otolemur_garnettii_69_3   (Small-eared galago)   3
Microcebus_murinus_69_1   (Gray mouse lemur)   1
Rattus_norvegicus_69_3.4   (Norway rat)   2
Mus_musculus_69_38   (House mouse)   3
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   4
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   3
Cavia_porcellus_69_3   (Domestic guinea pig)   1
Oryctolagus_cuniculus_69_2   (Rabbit)   0
Ochotona_princeps_69   (American pika)   4
Tupaia_belangeri_69   (Northern tree shrew)   3
Sus_scrofa_69_10.2   (Pig)   2
Bos_taurus_69_3.1   (Cattle)   2
Vicugna_pacos_69_1   (Alpaca)   2
Tursiops_truncatus_69_1   (Bottlenose dolphin)   2
Mustela_putorius_furo_69_1.0   (Domestic ferret)   5
Ailuropoda_melanoleuca_69_1   (Giant panda)   3
Canis_familiaris_69_3.1   (Dog)   3
Felis_catus_69   (Domestic cat)   3
Equus_caballus_69_2   (Horse)   1
Myotis_lucifugus_69_2.0   (Little brown bat)   3
Pteropus_vampyrus_69_1   (Large flying fox)   4
Sorex_araneus_69_1   (European shrew)   3
Erinaceus_europaeus_69   (Western European hedgehog)   1
Procavia_capensis_69_1   (Cape rock hyrax)   6
Loxodonta_africana_69_3   (African savanna elephant)   1
Echinops_telfairi_69   (Small Madagascar hedgehog)   3
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   5
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   3
Macropus_eugenii_69_1.0   (Tammar wallaby)   3
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   3
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   3
Ornithorhynchus_anatinus_69_5   (Platypus)   2
Petromyzon_marinus_69_7.0   (Sea lamprey)   2
Meleagris_gallopavo_69_2   (Turkey)   3
Gallus_gallus_69_2   (Chicken)   2
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   2
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   4
Anolis_carolinensis_69_2.0   (Green anole)   4
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   3
Latimeria_chalumnae_69_1   (Coelacanth)   8
Gadus_morhua_69_1   (Atlantic cod)   1
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   1
Takifugu_rubripes_69_4   (Torafugu)   5
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   3
Oryzias_latipes_69_1   (Japanese medaka)   4
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   6
Oreochromis_niloticus_69_1.0   (Nile tilapia)   7
Danio_rerio_69_9   (Zebrafish)   4
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   2
Ciona_intestinalis_69   (Vase tunicate)   3
Drosophila_melanogaster_69_5   (Fruit fly)   3
Caenorhabditis_elegans_69_215   (Roundworm)   2
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   8
Arabidopsis_thaliana_10   (Thale cress)   8

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   13
Homo_sapiens__(NCBI_version)   (Human)   7
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   3
Heliconius_numata__(Incomplete) 1
Loa_loa_v3.3_(Request)   (Eye worm)   0
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   3
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   0
Moniliophthora_perniciosa_FA553__(Genome_survey) 2
Picea_sitchensis__(Incomplete)   (Sitka spruce)   2
Lotus_japonicus__(Early_assembly) 3
Malus_x_domestica_(Duplicate)   (Apple)   17
Ricinus_communis__(Early_assembly)   (Castor bean)   9
Nicotiana_benthamiana_0.4.4_(Early_draft) 14
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   10
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   11
Phoenix_dactylifera__(Early_draft)   (Date palm)   0
Acholeplasma_laidlawii_PG-8A_(duplicate) 0
NCBI_plasmid_sequences_(Plasmids) 16
Protein_Data_Bank_(all_PDB_sequenc) 0
Protozoadb_2010_08_(Protozoadb) 68
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 341
STRING_v9.0.5_(STRING) 831
Uniprot_2018_03_genome 81625
UniProt__viral_sequences_(Viral) 5
NCBI_2017_08_genome 17683
PDB_chains_(SCOP_1.75)_(PDB) 16
TargetDB__(Targets) 18
NCBI_viral_sequences_(Viral) 23

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.