SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

  Home > SCOP hierarchy > Domain combination - _gap_,49899,_gap_,47473,_gap_

Domain combinations for _gap_,49899,_gap_,47473,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

49899 - Concanavalin A-like lectins/glucanases
47473 - EF-hand

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

Jump to [ Top of page · Domain combinations in individual genomes ]

Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Pongo_abelii_76_2   (Sumatran orangutan)   0
Otolemur_garnettii_76_3   (Small-eared galago)   0
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   0
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   0
Cavia_porcellus_76_3   (Domestic guinea pig)   0
Ochotona_princeps_76   (American pika)   0
Tupaia_belangeri_76   (Northern tree shrew)   0
Vicugna_pacos_76_1   (Alpaca)   0
Tursiops_truncatus_76_1   (Bottlenose dolphin)   0
Felis_catus_76_6.2   (Domestic cat)   0
Myotis_lucifugus_76_2.0   (Little brown bat)   0
Echinops_telfairi_76   (Small Madagascar hedgehog)   0
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   0
Ornithorhynchus_anatinus_76_5   (Platypus)   0
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   0
Anolis_carolinensis_76_2.0   (Green anole)   0
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   0
Gadus_morhua_76_1   (Atlantic cod)   0
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   0
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   0
Poecilia_formosa_76   (Amazon molly)   0
Oreochromis_niloticus_76_1.0   (Nile tilapia)   0
Danio_rerio_76_9   (Zebrafish)   0
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   0
Adineta_vaga 0
Octopus_bimaculoides_280 2
Capitella_sp._I_ 0
Drosophila_simulans_1.3 0
Drosophila_sechellia_1.3 0
Tetranychus_urticae_   (Two-spotted spider mite)   0
Onchocerca_volvulus_22 0
Hymenolepis_microstoma_ 0
Echinococcus_multilocularis_ 1
Echinococcus_granulosus_ 1
Schistosoma_mansoni_ 0
Amphimedon_queenslandica 0
Trichoplax_adhaerens_ 0
Ostreococcus_sp._RCC809_ 1
Ostreococcus_lucimarinus_CCE9901_ 1
Bathycoccus_prasinos_ 3
Pythium_arrhenomanes_ATCC_12531_22 0
Pythium_ultimum_v1.7-2 0
Pythium_vexans_DAOM_BR484_22 0
Phytophthora_ramorum_1.1   (Sudden oak death agent)   0
Phytophthora_sojae_1.1 0
Phytophthora_infestans_T30-4_ 0

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Longest transcript per gene
Genome     Number
Pongo_abelii_69_2   (Sumatran orangutan)   0
Otolemur_garnettii_69_3   (Small-eared galago)   0
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   0
Cavia_porcellus_69_3   (Domestic guinea pig)   0
Ochotona_princeps_69   (American pika)   0
Tupaia_belangeri_69   (Northern tree shrew)   0
Vicugna_pacos_69_1   (Alpaca)   0
Tursiops_truncatus_69_1   (Bottlenose dolphin)   0
Felis_catus_69   (Domestic cat)   0
Myotis_lucifugus_69_2.0   (Little brown bat)   0
Echinops_telfairi_69   (Small Madagascar hedgehog)   0
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   0
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   0
Ornithorhynchus_anatinus_69_5   (Platypus)   0
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   0
Anolis_carolinensis_69_2.0   (Green anole)   0
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   0
Gadus_morhua_69_1   (Atlantic cod)   0
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   0
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   0
Oreochromis_niloticus_69_1.0   (Nile tilapia)   0

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Others
Genome     Number
NCBI_2017_08_genome 6
STRING_v9.0.5_(STRING) 1
Uniprot_2018_03_genome 117

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

Please send feedback, comments or questions to superfamily@cs.bris.ac.uk or use the feedback form.

© Copyright 2013 The SUPERFAMILY authors and Julian Gough.