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  Home > SCOP hierarchy > Domain combination - _gap_,49899,_gap_,50729,81837,_gap_,50978

Domain combinations for _gap_,49899,_gap_,50729,81837,_gap_,50978 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

49899 - Concanavalin A-like lectins/glucanases
50729 - PH domain-like
81837 - BEACH domain
50978 - WD40 repeat-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Microcebus_murinus_76_1   (Gray mouse lemur)   1
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   0
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   1
Canis_familiaris_76_3.1   (Dog)   1
Equus_caballus_76_2   (Horse)   1
Procavia_capensis_76_1   (Cape rock hyrax)   1
Echinops_telfairi_76   (Small Madagascar hedgehog)   0
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   1
Macropus_eugenii_76_1.0   (Tammar wallaby)   1
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   1
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   1
Lepisosteus_oculatus_76   (Spotted gar)   1
Drosophila_melanogaster_76_5   (Fruit fly)   4
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   0
Daphnia_pulex_   (Common water flea)   1
Echinococcus_granulosus_ 1
Taenia_solium_   (Pork tapeworm)   0
Proterospongia_sp._ATCC_50818_ 0
Capsaspora_owczarzaki_ATCC_30864_ 0
Mortierella_verticillata_NRRL_6337_ 0
Sporisorium_reilianum_22 0
Coniophora_puteana 1
Apiospora_montagnei_NRRL_25634_v1.0 1
Didymella_exigua_CBS_183.55_v1.0 1
Mycosphaerella_fijiensis_CIRAD86_ 1
Arthroderma_benhamiae_CBS_112371_ 1
Aspergillus_fumigatus_Af293 1
Vanderwaltozyma_polyspora_DSM_70294_ 1
Lachancea_kluyveri_ 1
Saccharomyces_paradoxus_MIT 1
Dictyostelium_discoideum 0
Dictyostelium_purpureum_ 1
Selaginella_moellendorffii_ 2
Pinus_taeda   (Loblolly pine)   1
Gossypium_raimondii_v221 3
Thellungiella_halophila_v173 2
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   2
Capsella_rubella_v183 2
Arabidopsis_lyrata_   (Lyrate rockcress)   2
Arabidopsis_thaliana_10   (Thale cress)   2
Medicago_truncatula_   (Barrel medic)   2
Fragaria_vesca_   (Wild strawberry)   1
Mimulus_guttatus_v140   (Spotted monkey flower)   1
Aquilegia_coerulea_v195 3
Triticum_urartu_22 2
Triticum_aestivum_22   (Bread wheat)   1
Aegilops_tauschii_22 1
Brachypodium_distachyon_   (Stiff brome)   1
Oryza_barthii_22   (African wild rice)   1
Oryza_glumaepatula_22 1
Oryza_punctata_22 1
Oryza_nivara_22 1
Oryza_brachyantha_22   (Malo sina)   2
Setaria_italica_v164   (Foxtail millet)   3
Zea_mays_subsp._mays_   (Maize)   1
Zea_mays_v181   (Maize)   1
Thecamonas_trahens_ATCC_50062_ 1
Leishmania_major_strain_Friedlin_ 1
Trypanosoma_vivax_ 1
Trypanosoma_brucei_gambiense_v4.1 1
Trypanosoma_brucei_TREU927_v4.1 1
Albugo_laibachii_22 1
Pythium_iwayamai_DAOM_BR242034_22 1
Pythium_irregulare_DAOM_BR486_22 2
Pythium_vexans_DAOM_BR484_22 2
Phytophthora_ramorum_1.1   (Sudden oak death agent)   0
Phytophthora_sojae_1.1 0
Phytophthora_infestans_T30-4_ 1
Hyaloperonospora_arabidopsidis_22 0
Trichomonas_vaginalis_ 3

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   1
Aspergillus_fumigatus_A1163_ 1
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   1
Trypanosoma_brucei_Lister_427_v4.1 1

Longest transcript per gene
Genome     Number
Microcebus_murinus_69_1   (Gray mouse lemur)   1
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   0
Equus_caballus_69_2   (Horse)   1
Procavia_capensis_69_1   (Cape rock hyrax)   1
Echinops_telfairi_69   (Small Madagascar hedgehog)   0
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   1
Macropus_eugenii_69_1.0   (Tammar wallaby)   1
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   1
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   1
Drosophila_melanogaster_69_5   (Fruit fly)   1
Arabidopsis_thaliana_10   (Thale cress)   1

Others
Genome     Number
Loa_loa_v3.3_(Request)   (Eye worm)   1
Nicotiana_benthamiana_0.4.4_(Early_draft) 1
Protozoadb_2010_08_(Protozoadb) 9
STRING_v9.0.5_(STRING) 15
Uniprot_2018_03_genome 5876
NCBI_2017_08_genome 261

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.