SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for _gap_,50044 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

50044 - SH3-domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   92
Pan_troglodytes_76_2.1.4   (Chimpanzee)   10
Gorilla_gorilla_76_3.1   (Western gorilla)   14
Pongo_abelii_76_2   (Sumatran orangutan)   12
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   10
Papio_anubis_76   (Olive baboon)   10
Macaca_mulatta_76_1   (Rhesus monkey)   35
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   49
Otolemur_garnettii_76_3   (Small-eared galago)   14
Microcebus_murinus_76_1   (Gray mouse lemur)   6
Rattus_norvegicus_76_5.0   (Norway rat)   14
Mus_musculus_76_38   (House mouse)   53
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   10
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   12
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   14
Cavia_porcellus_76_3   (Domestic guinea pig)   15
Oryctolagus_cuniculus_76_2   (Rabbit)   17
Ochotona_princeps_76   (American pika)   9
Tupaia_belangeri_76   (Northern tree shrew)   10
Sus_scrofa_76_10.2   (Pig)   22
Bos_taurus_76_3.1   (Cattle)   12
Ovis_aries_76_3.1   (Sheep)   13
Vicugna_pacos_76_1   (Alpaca)   11
Tursiops_truncatus_76_1   (Bottlenose dolphin)   10
Mustela_putorius_furo_76_1.0   (Domestic ferret)   10
Ailuropoda_melanoleuca_76_1   (Giant panda)   15
Canis_familiaris_76_3.1   (Dog)   17
Felis_catus_76_6.2   (Domestic cat)   16
Equus_caballus_76_2   (Horse)   17
Myotis_lucifugus_76_2.0   (Little brown bat)   17
Pteropus_vampyrus_76_1   (Large flying fox)   12
Sorex_araneus_76_1   (European shrew)   12
Erinaceus_europaeus_76   (Western European hedgehog)   9
Procavia_capensis_76_1   (Cape rock hyrax)   10
Loxodonta_africana_76_3   (African savanna elephant)   16
Echinops_telfairi_76   (Small Madagascar hedgehog)   12
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   23
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   6
Macropus_eugenii_76_1.0   (Tammar wallaby)   9
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   13
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   12
Ornithorhynchus_anatinus_76_5   (Platypus)   22
Saccoglossus_kowalevskii_v3.0 12
Petromyzon_marinus_76_7.0   (Sea lamprey)   13
Meleagris_gallopavo_76_2   (Turkey)   22
Gallus_gallus_76_4   (Chicken)   16
Anas_platyrhynchos_76_1.0   (Mallard)   16
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   12
Ficedula_albicollis_76_1.0   (Collared flycatcher)   10
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   13
Anolis_carolinensis_76_2.0   (Green anole)   14
Xenopus_laevis_   (African clawed frog)   22
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   15
Latimeria_chalumnae_76_1   (Coelacanth)   17
Lepisosteus_oculatus_76   (Spotted gar)   14
Gadus_morhua_76_1   (Atlantic cod)   12
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   21
Takifugu_rubripes_76_4   (Torafugu)   36
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   14
Oryzias_latipes_76_1   (Japanese medaka)   16
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   12
Poecilia_formosa_76   (Amazon molly)   12
Oreochromis_niloticus_76_1.0   (Nile tilapia)   15
Astyanax_mexicanus_76   (Mexican tetra)   18
Danio_rerio_76_9   (Zebrafish)   41
Oikopleura_dioica 12
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   20
Ciona_intestinalis_76   (Vase tunicate)   15
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   10
Adineta_vaga 24
Octopus_bimaculoides_280 18
Crassostrea_gigas_22   (Pacific oyster)   5
Lottia_gigantea_   (Owl limpet)   5
Helobdella_robusta_ 8
Capitella_sp._I_ 6
Danaus_plexippus_OGS1.0   (Monarch butterfly)   9
Heliconius_melpomene_   (Postman butterfly)   5
Bombyx_mori_   (Domestic silkworm)   9
Nasonia_vitripennis_   (Jewel wasp)   3
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   5
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   5
Linepithema_humile_v1.1   (Argentine ant)   6
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   5
Solenopsis_invicta_v.2.2.3   (Red fire ant)   7
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   5
Atta_cephalotes_v1.1 6
Camponotus_floridanus_v3.3   (Florida carpenter ant)   4
Lucilia_cuprina   (Australian sheep blowfly)   5
Drosophila_grimshawi_1.3 6
Drosophila_willistoni_1.3 5
Drosophila_pseudoobscura_2.13 4
Drosophila_persimilis_1.3 5
Drosophila_suzukii 5
Drosophila_yakuba_1.3 3
Drosophila_simulans_1.3 4
Drosophila_sechellia_1.3 7
Drosophila_melanogaster_76_5   (Fruit fly)   12
Drosophila_erecta_1.3 4
Drosophila_ananassae_1.3 5
Drosophila_virilis_1.2 4
Drosophila_mojavensis_1.3 6
Megaselia_scalaris_22 7
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   8
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   10
Anopheles_darlingi_22   (American malaria mosquito)   3
Anopheles_gambiae_49_3j   (African malaria mosquito)   3
Tribolium_castaneum_3.0   (Red flour beetle)   5
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   5
Acyrthosiphon_pisum_   (Pea aphid)   9
Rhodnius_prolixus_22 6
Daphnia_pulex_   (Common water flea)   7
Strigamia_maritima_22 9
Sarcoptes_scabiei 6
Tetranychus_urticae_   (Two-spotted spider mite)   6
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   4
Pristionchus_pacificus_ 5
Meloidogyne_incognita_   (Southern root-knot nematode)   13
Meloidogyne_hapla_ 8
Onchocerca_volvulus_22 3
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   6
Caenorhabditis_japonica_ 9
Caenorhabditis_brenneri_ 12
Caenorhabditis_remanei_ 10
Caenorhabditis_elegans_76_235   (Roundworm)   10
Caenorhabditis_briggsae_2 7
Trichinella_spiralis_22 6
Hymenolepis_microstoma_ 3
Echinococcus_multilocularis_ 6
Echinococcus_granulosus_ 5
Taenia_solium_   (Pork tapeworm)   7
Schistosoma_mansoni_ 4
Mnemiopsis_leidyi   (Sea walnut)   7
Thelohanellus_kitauei 4
Acropora_digitifera_v1.0 9
Nematostella_vectensis_1.0   (Starlet sea anemone)   5
Hydra_vulgaris 4
Amphimedon_queenslandica 12
Trichoplax_adhaerens_ 7
Proterospongia_sp._ATCC_50818_ 14
Monosiga_brevicollis_ 6
Sphaeroforma_arctica_JP610_ 3
Capsaspora_owczarzaki_ATCC_30864_ 8
Conidiobolus_coronatus_NRRL28638_v1.0 7
Mortierella_verticillata_NRRL_6337_ 7
Phycomyces_blakesleeanus_ 12
Rhizopus_oryzae_RA_99-880_ 13
Mucor_circinelloides_ 18
Rhizomucor_miehei_CAU432_ 14
Malassezia_globosa_CBS_7966_ 8
Sporisorium_reilianum_22 6
Ustilago_maydis_ 5
Mixia_osmundae_IAM_14324_v1.0 5
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 4
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 7
Melampsora_laricis-populina_ 5
Rhodotorula_graminis_WP1_v1.0 5
Sporobolomyces_roseus_IAM_13481_ 3
Microbotryum_violaceum_22 6
Wallemia_sebi_v1.0 5
Sphaerobolus_stellatus_v1.0 10
Piloderma_croceum_F_1598_v1.0 8
Serpula_lacrymans_var._lacrymans_S7.9_ 6
Coniophora_puteana 6
Hydnomerulius_pinastri_v2.0 9
Paxillus_rubicundulus_Ve08.2h10_v1.0 6
Pisolithus_microcarpus_441_v1.0 8
Pisolithus_tinctorius_Marx_270_v1.0 9
Scleroderma_citrinum_Foug_A_v1.0 6
Coprinopsis_cinerea_okayama7_130_v3 10
Pleurotus_ostreatus_   (Oyster mushroom)   8
Amanita_thiersii_Skay4041_v1.0 7
Amanita_muscaria_Koide_v1.0   (Fly agaric)   7
Galerina_marginata_v1.0 7
Hebeloma_cylindrosporum_h7_v2.0 8
Laccaria_bicolor_S238N-H82_ 12
Agaricus_bisporus_var._bisporus_ 9
Schizophyllum_commune_ 5
Stereum_hirsutum_FP-91666_SS1__v1.0 7
Heterobasidion_annosum_ 4
Gloeophyllum_trabeumv1.0 9
Punctularia_strigosozonata_v1.0 9
Sebacina_vermifera_MAFF_305830_v1.0 8
Fomitiporia_mediterranea_v1.0 9
Tulasnella_calospora_AL13/4D_v1.0 11
Postia_placenta_ 11
Wolfiporia_cocos_MD-104_SS10__v1.0 8
Fomitopsis_pinicolav1.0 7
Fomitopsis_pinicola_FP-58527_SS1_v3.0 7
Phanerochaete_chrysosporium_RP-78_2.1 7
Dichomitus_squalens 7
Trametes_versicolor_v1.0 6
Tremella_mesenterica_   (Witches' butter)   7
Daldinia_eschscholzii_EC12_v1.0 4
Apiospora_montagnei_NRRL_25634_v1.0 2
Magnaporthe_poae_ATCC_64411_22 4
Magnaporthe_grisea_70-15_ 4
Podospora_anserina_ 2
Sporotrichum_thermophile_ATCC_42464_ 2
Thielavia_terrestris_NRRL_8126_ 4
Chaetomium_globosum_CBS_148.51_ 3
Neurospora_tetrasperma_ 3
Neurospora_discreta_FGSC_8579_ 3
Neurospora_crassa_OR74A_ 3
Cryphonectria_parasitica_   (Chestnut blight fungus)   4
Verticillium_albo-atrum_VaMs.102_ 5
Verticillium_dahliae_VdLs.17_ 5
Acremonium_alcalophilumv_1.0 3
Glomerella_graminicola_22 2
Fusarium_graminearum_ 3
Nectria_haematococca_mpVI_ 3
Fusarium_oxysporum_f._sp._lycopersici_4286_ 3
Fusarium_verticillioides_7600_ 2
Trichoderma_asperellum_CBS_433.97_v1.0 3
Trichoderma_atroviride_ 4
Trichoderma_citrinoviride_v1.0 3
Trichoderma_reesei_1.2 2
Trichoderma_virens_Gv29-8_ 3
Trichoderma_longibrachiatum_ATCC_18648_v1.0 2
Trichoderma_harzianum_CBS_226.95_v1.0 3
Amorphotheca_resinae_v1.0   (Creosote fungus)   3
Botrytis_cinerea_B05.10_ 1
Sclerotinia_sclerotiorum_ 3
Blumeria_graminis_22 2
Didymella_exigua_CBS_183.55_v1.0 3
Leptosphaeria_maculans_22 3
Setosphaeria_turcica_v1.0 3
Cochliobolus_miyabeanus_ATCC_44560_v1.0 3
Cochliobolus_victoriae_FI3_v1.0 3
Cochliobolus_carbonum_26-R-13_v1.0 3
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   3
Alternaria_brassicicola_ 3
Cochliobolus_lunatus_m118_v2.0 3
Pyrenophora_teres_f._teres_22 3
Pyrenophora_tritici-repentis_ 3
Stagonospora_nodorum_ 3
Mycosphaerella_graminicola_IPO323_ 3
Zasmidium_cellare_ATCC_36951_v1.0 4
Dothistroma_septosporum 3
Septoria_musiva_v1.0 4
Mycosphaerella_fijiensis_CIRAD86_ 2
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 2
Paracoccidioides_brasiliensis_Pb18_ 3
Coccidioides_posadasii_RMSCC_3488_ 2
Coccidioides_immitis_RS_ 2
Ajellomyces_dermatitidis_SLH14081_ 3
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 3
Microsporum_canis_CBS_113480_ 2
Trichophyton_equinum_CBS_127.97_ 2
Trichophyton_verrucosum_HKI_0517_ 2
Arthroderma_benhamiae_CBS_112371_ 1
Trichophyton_tonsurans_CBS_112818_ 3
Trichophyton_rubrum_CBS_118892_ 3
Uncinocarpus_reesii_1704_ 2
Aspergillus_zonatus_v1.0 2
Penicillium_chrysogenum_Wisconsin_54-1255_ 3
Penicillium_chrysogenum_v1.0 3
Aspergillus_acidus_v1.0 2
Aspergillus_fumigatus_Af293 2
Aspergillus_brasiliensis_v1.0 2
Aspergillus_nidulans_FGSC_A4_ 3
Aspergillus_sydowii_v1.0 3
Aspergillus_versicolor_v1.0 3
Aspergillus_glaucus 4
Aspergillus_carbonarius_ITEM_5010_ 2
Neosartorya_fischeri_NRRL_181_ 2
Aspergillus_terreus_NIH2624_ 2
Aspergillus_tubingensis_v1.0 2
Aspergillus_wentii_v1.0 4
Aspergillus_oryzae_RIB40_ 2
Aspergillus_niger_22 2
Aspergillus_niger_ATCC_1015_ 2
Aspergillus_flavus_NRRL3357_ 3
Aspergillus_clavatus_NRRL_1_ 2
Penicillium_marneffei_ATCC_18224_ 2
Tuber_melanosporum_Mel28_22 2
Tuber_melanosporum_Vittad_   (Perigord truffle)   2
Hansenula_polymorpha_v2.0 3
Dekkera_bruxellensis_CBS_2499_v2.0 4
Pichia_membranifaciensv1.0 2
Candida_tanzawaensis_NRRL_Y-17324__v1.0 4
Candida_dubliniensis_CD36_ 4
Candida_tropicalis_MYA-3404_ 4
Candida_parapsilosis_ 5
Candida_albicans_SC5314 4
Lodderomyces_elongisporus_NRRL_YB-4239_ 3
Babjeviella_inositovora_NRRL_Y-12698_v1.0 3
Pichia_stipitis_CBS_6054_ 3
Candida_guilliermondii_ATCC_6260_ 4
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 4
Debaromyces_hansenii 3
Wickerhamomyces_anomalus 4
Pichia_pastoris_GS115_ 5
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 6
Yarrowia_lipolytica_CLIB122 4
Candida_lusitaniae_ATCC_42720_ 5
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 4
Vanderwaltozyma_polyspora_DSM_70294_ 5
Candida_glabrata_CBS138 5
Kluyveromyces_thermotolerans_CBS_6340 4
Lachancea_kluyveri_ 4
Kluyveromyces_waltii 4
Ashbya_gossypii_ATCC_10895_ 4
Zygosaccharomyces_rouxii_ 4
Saccharomyces_mikatae_MIT 4
Saccharomyces_paradoxus_MIT 5
Saccharomyces_cerevisiae_76   (Baker's yeast)   5
Saccharomyces_bayanus_MIT 6
Kluyveromyces_lactis 4
Schizosaccharomyces_cryophilus_OY26_22 3
Schizosaccharomyces_octosporus_yFS286_ 3
Schizosaccharomyces_japonicus_yFS275_ 3
Schizosaccharomyces_pombe   (Fission yeast)   3
Catenaria_anguillulae_PL171_v1.0 16
Allomyces_macrogynus_ATCC_38327_ 39
Spizellomyces_punctatus_DAOM_BR117_ 21
Dictyostelium_discoideum 4
Dictyostelium_purpureum_ 3
Entamoeba_dispar_1.2 3
Entamoeba_invadens_1.2 0
Entamoeba_histolytica_1 3
Selaginella_moellendorffii_ 0
Pinus_taeda   (Loblolly pine)   1
Picea_abies   (Norway spruce)   2
Eucalyptus_grandis_v201   (Rose gum)   0
Theobroma_cacao_B97-61/B2_v1   (Cacao)   0
Gossypium_raimondii_v221 0
Citrus_clementina_v165 7
Thellungiella_halophila_v173 0
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   0
Capsella_rubella_v183 0
Arabidopsis_lyrata_   (Lyrate rockcress)   0
Arabidopsis_thaliana_10   (Thale cress)   1
Carica_papaya_   (Papaya)   0
Medicago_truncatula_   (Barrel medic)   0
Phaseolus_vulgaris_v186   (French bean)   0
Glycine_max_v109   (Soybean)   0
Cucumis_sativus_v122   (Cucumber)   0
Fragaria_vesca_   (Wild strawberry)   0
Malus_domestica_v196   (Apple)   1
Linum_usitatissimum_v200   (Flax)   1
Manihot_esculenta_v147   (Cassava)   1
Populus_trichocarpa_v156   (Black cottonwood)   0
Vitis_vinifera_   (Wine grape)   1
Mimulus_guttatus_v140   (Spotted monkey flower)   0
Solanum_lycopersicum_v.2.3   (Tomato)   0
Actinidia_chinensis_Hongyang_ 0
Aquilegia_coerulea_v195 0
Triticum_urartu_22 0
Triticum_aestivum_22   (Bread wheat)   2
Aegilops_tauschii_22 0
Brachypodium_distachyon_   (Stiff brome)   0
Oryza_barthii_22   (African wild rice)   0
Oryza_meridionalis_22 0
Oryza_glumaepatula_22 0
Oryza_punctata_22 0
Oryza_nivara_22 0
Oryza_brachyantha_22   (Malo sina)   0
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   0
Oryza_sativa_v193   (Rice)   0
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   1
Panicum_virgatum_v202   (Switchgrass)   0
Setaria_italica_v164   (Foxtail millet)   0
Zea_mays_subsp._mays_   (Maize)   1
Zea_mays_v181   (Maize)   2
Sorghum_bicolor_   (Sorghum)   0
Musa_balbisiana   (Balbis banana)   0
Musa_acuminata_22   (Wild Malaysian banana)   0
Amborella_trichopoda_22 0
Coccomyxa_subellipsoidea_sp._C-169_v2 0
Asterochloris_sp._Cgr/DA1pho_v1.0 0
Chlorella_variabilis_sp._NC64A_ 0
Chlorella_vulgaris_ 0
Volvox_carteri_f._nagariensis_ 0
Volvox_carteri_v199 0
Porphyridium_purpureum_02_2012 1
Thecamonas_trahens_ATCC_50062_ 8
Bigelowiella_natans_CCMP2755_22 6
Leishmania_mexicana_2.4 2
Leishmania_major_strain_Friedlin_ 2
Leishmania_infantum_JPCM5_2.4 1
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 2
Trypanosoma_vivax_ 1
Trypanosoma_cruzi_strain_CL_Brener 2
Trypanosoma_congolense_2.4 2
Trypanosoma_brucei_gambiense_v4.1 2
Trypanosoma_brucei_TREU927_v4.1 2
Ectocarpus_siliculosus 1
Aureococcus_anophagefferens_ 3
Albugo_laibachii_22 0
Pythium_iwayamai_DAOM_BR242034_22 0
Pythium_arrhenomanes_ATCC_12531_22 0
Pythium_ultimum_v1.7-2 0
Pythium_aphanidermatum_DAOM_BR444_22 0
Pythium_irregulare_DAOM_BR486_22 0
Pythium_vexans_DAOM_BR484_22 0
Phytophthora_ramorum_1.1   (Sudden oak death agent)   0
Phytophthora_sojae_1.1 0
Phytophthora_infestans_T30-4_ 0
Phytophthora_capsici_ 0
Hyaloperonospora_arabidopsidis_22 0
Thalassiosira_pseudonana_CCMP1335 0
Perkinsus_marinus_ATCC_50983_ 8
Paramecium_tetraurelia_ 5
Tetrahymena_thermophila_SB210_1_ 3
Neospora_caninum 0
Toxoplasma_gondii_VEG 1
Toxoplasma_gondii_ME49 1
Toxoplasma_gondii_GT1 1
Babesia_bovis_T2Bo_ 0
Theileria_parva__ 1
Theileria_annulata 1
Symbiodinium_minutum_clade_B1_v1.2 4
Naegleria_gruberi_ 0
Trichomonas_vaginalis_ 4
Guillardia_theta_CCMP2712_v1.0_ 0
Emiliania_huxleyi_CCMP1516_ 2
Caldilinea_aerophila_DSM_14535_=_NBRC_104270 0
Anaerococcus_prevotii_DSM_20548 0
Acidaminococcus_intestini_RyC-MR95 1
Acidaminococcus_fermentans_DSM_20731 1
Symbiobacterium_thermophilum_IAM_14863 0
Clostridium_cellulolyticum_H10 0
Ruminococcus_sp. 1
Thermincola_potens_JR 0
Pelotomaculum_thermopropionicum_SI 1
Desulfitobacterium_hafniense_Y51 0
Desulfotomaculum_acetoxidans_DSM_771 0
Clostridium_difficile_630 0
Clostridium_sticklandii_DSM_519 0
Clostridium_saccharolyticum_WM1 0
Roseburia_hominis_A2-183 1
Butyrivibrio_fibrisolvens 0
Syntrophothermus_lipocalidus_DSM_12680 0
Alkaliphilus_oremlandii_OhILAs 0
Clostridium_sp._BNL1100 0
Clostridium_perfringens_ATCC_13124 0
Thermoanaerobacter_tengcongensis_MB4 0
Thermoanaerobacter_mathranii_subsp._mathranii_str._A3 0
Thermoanaerobacter_pseudethanolicus_ATCC_33223 0
Thermoanaerobacter_sp._X514 0
Thermoanaerobacter_italicus_Ab9 0
Thermoanaerobacter_wiegelii_Rt8.B1 0
Thermoanaerobacter_brockii_subsp._finnii_Ako-1 0
Oenococcus_oeni_PSU-1 0
Exiguobacterium_sp._AT1b 0
Brevibacillus_brevis_NBRC_100599 0
Paenibacillus_mucilaginosus_3016 0
Geobacillus_thermoglucosidasius_C56-YS93 0
Lysinibacillus_sphaericus_C3-41 0
Anoxybacillus_flavithermus_WK1 0
Geobacillus_thermoleovorans_CCB_US3_UF5 0
Geobacillus_kaustophilus_HTA426 0
Geobacillus_sp._GHH01 0
Bacillus_sp._JS 0
Bacillus_subtilis_subsp._subtilis_str._168 0
Bacillus_weihenstephanensis_KBAB4 0
Bacillus_thuringiensis_str._Al_Hakam 0
Bacillus_cereus_03BB102 0
Bacillus_anthracis_str._A0248 0
Bacillus_clausii_KSM-K16 0
Bacillus_megaterium_DSM_319 0
Bacillus_coagulans_2-6 0
Haliscomenobacter_hydrossis_DSM_1100 1
Niastella_koreensis_GR20-10 1
Chitinophaga_pinensis_DSM_2588 1
Flavobacteriaceae_bacterium_3519-10 1
Riemerella_anatipestifer_ATCC_11845_=_DSM_15868 1
Methylacidiphilum_infernorum_V4 1
Turneriella_parva_DSM_21527 0
Deferribacter_desulfuricans_SSM1 0
Leptotrichia_buccalis_C-1013-b 1
Desulfarculus_baarsii_DSM_2075 1
Desulfobacca_acetoxidans_DSM_11109 0
Methylovorus_sp._MP688 1
Methylovorus_glucosetrophus_SIP3-4 1
Magnetococcus_marinus_MC-1 0
Ruegeria_sp._TM1040 1
Starkeya_novella_DSM_506 0
Sinorhizobium_medicae_WSM419 0
Sinorhizobium_meliloti_AK83 0
Rhizobium_etli_CIAT_652 0
Rhodopseudomonas_palustris_BisA53 0
Nitrobacter_winogradskyi_Nb-255 0
Nitrobacter_hamburgensis_X14 0
Bradyrhizobium_japonicum_USDA_110 0
Xanthomonas_axonopodis_pv._citri_str._306 1
Xanthomonas_oryzae_pv._oryzae_PXO99A 1

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   16
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   8
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   5
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   5
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   8
Cryptococcus_neoformans_var._grubii_H99_ 6
Cryptococcus_neoformans_B-3501A_ 6
Cryptococcus_neoformans_JEC21_ 4
Paracoccidioides_brasiliensis_Pb01_ 1
Paracoccidioides_brasiliensis_Pb03_ 3
Coccidioides_posadasii_str._Silveira_ 1
Coccidioides_immitis_RMSCC_3703_ 3
Coccidioides_immitis_RMSCC_2394_ 2
Coccidioides_immitis_H538.4_ 3
Ajellomyces_dermatitidis_ER-3_ 3
Histoplasma_capsulatum_H143 3
Histoplasma_capsulatum_H88 3
Histoplasma_capsulatum_G186AR 3
Aspergillus_fumigatus_A1163_ 2
Candida_albicans_WO-1_ 4
Saccharomyces_cerevisiae_UC5 5
Saccharomyces_cerevisiae_PW5 5
Saccharomyces_cerevisiae_FL100 4
Saccharomyces_cerevisiae_CLIB324 2
Saccharomyces_cerevisiae_CBS7960 3
Saccharomyces_cerevisiae_YJM269 4
Saccharomyces_cerevisiae_T7 5
Saccharomyces_cerevisiae_FostersB 4
Saccharomyces_cerevisiae_FostersO 2
Saccharomyces_cerevisiae_VL3 4
Saccharomyces_cerevisiae_Vin13 5
Saccharomyces_cerevisiae_LalvinQA23 5
Saccharomyces_cerevisiae_AWRI796 6
Saccharomyces_cerevisiae_Sigma1278b 5
Saccharomyces_cerevisiae_W303 5
Saccharomyces_cerevisiae_JAY291 5
Saccharomyces_cerevisiae_AWRI1631 4
Saccharomyces_cerevisiae_YPS163 2
Saccharomyces_cerevisiae_M22 1
Saccharomyces_cerevisiae_T73 1
Saccharomyces_cerevisiae_CLIB215 1
Saccharomyces_cerevisiae_Y10 2
Saccharomyces_cerevisiae_YJM789_ 5
Saccharomyces_cerevisiae_YJM789 5
Saccharomyces_cerevisiae_RM11-1a 5
Saccharomyces_cerevisiae_RM11-1a_ 5
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   5
Schizosaccharomyces_pombe_972h-_ 3
Batrachochytrium_dendrobatidis_JEL423_ 24
Batrachochytrium_dendrobatidis_JAM81_ 24
Hordeum_vulgare_22   (Domesticated barley)   2
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   1
Trypanosoma_brucei_Lister_427_v4.1 2
Neospora_caninum_Nc-Liverpool_6.2 0
Synechococcus_sp._JA-2-3B'a(2-13) 0
Desulfosporosinus_meridiei_DSM_13257 0
Desulfitobacterium_hafniense_DCB-2 0
Clostridium_difficile_BI1 0
Clostridium_difficile_R20291 0
Clostridium_difficile_CD196 0
Clostridium_sp._SY8519 0
Clostridium_saccharobutylicum_DSM_13864 0
Clostridium_perfringens_SM101 0
Clostridium_perfringens_str._13 0
Thermoanaerobacterium_saccharolyticum_JW/SL-YS485 0
Thermacetogenium_phaeum_DSM_12270 0
Thermoanaerobacter_sp._X513 0
Thermobacillus_composti_KWC4 0
Paenibacillus_mucilaginosus_KNP414 0
Paenibacillus_mucilaginosus_K02 0
Geobacillus_sp._C56-T3 0
Geobacillus_sp._Y4.1MC1 0
Geobacillus_sp._Y412MC52 0
Geobacillus_sp._Y412MC61 0
Amphibacillus_xylanus_NBRC_15112 0
Bacillus_subtilis_PY79 0
Bacillus_subtilis_XF-1 0
Bacillus_subtilis_QB928 0
Bacillus_subtilis_BSn5 0
Bacillus_subtilis_subsp._subtilis_str._BAB-1 0
Bacillus_subtilis_subsp._subtilis_str._BSP1 0
Bacillus_subtilis_subsp._subtilis_6051-HGW 0
Bacillus_cereus_subsp._cytotoxis_NVH_391-98 0
Bacillus_toyonensis_BCT-7112 0
Bacillus_thuringiensis_HD-771 0
Bacillus_thuringiensis_MC28 0
Bacillus_thuringiensis_serovar_konkukian_str._97-27 0
Bacillus_thuringiensis_BMB171 0
Bacillus_thuringiensis_serovar_finitimus_YBT-020 0
Bacillus_cereus_FRI-35 0
Bacillus_cereus_biovar_anthracis_str._CI 0
Bacillus_cereus_AH820 0
Bacillus_cereus_AH187 0
Bacillus_cereus_B4264 0
Bacillus_cereus_G9842 0
Bacillus_cereus_Q1 0
Bacillus_cereus_F837/76 0
Bacillus_cereus_NC7401 0
Bacillus_cereus_E33L 0
Bacillus_cereus_ATCC_10987 0
Bacillus_anthracis_str._H9401 0
Bacillus_anthracis_str._CDC_684 0
Bacillus_anthracis_str._'Ames_Ancestor' 0
Bacillus_anthracis_str._Sterne 0
Bacillus_anthracis_str._Ames 0
Bacillus_megaterium_WSH-002 0
Bacillus_megaterium_QM_B1551 0
Riemerella_anatipestifer_RA-CH-2 1
Riemerella_anatipestifer_RA-CH-1 1
Riemerella_anatipestifer_RA-GD 1
Riemerella_anatipestifer_ATCC_11845_=_DSM_15868 1
Sinorhizobium_meliloti_2011 0
Sinorhizobium_meliloti_GR4 0
Sinorhizobium_meliloti_Rm41 0
Sinorhizobium_meliloti_SM11 0
Sinorhizobium_meliloti_BL225C 0
Sinorhizobium_meliloti_1021 0
Rhodopseudomonas_palustris_DX-1 0
Rhodopseudomonas_palustris_TIE-1 0
Rhodopseudomonas_palustris_HaA2 0
Rhodopseudomonas_palustris_BisB5 0
Rhodopseudomonas_palustris_BisB18 0
Rhodopseudomonas_palustris_CGA009 0
Bradyrhizobium_sp._S23321 0
Bradyrhizobium_oligotrophicum_S58 0
Bradyrhizobium_japonicum_USDA_6 0
Xanthomonas_citri_subsp._citri_Aw12879 1
Xanthomonas_campestris_pv._vesicatoria_str._85-10 1
Xanthomonas_axonopodis_pv._citrumelo_F1 1
Xanthomonas_axonopodis_Xac29-1 1
Xanthomonas_oryzae_pv._oryzicola_BLS256 1
Xanthomonas_oryzae_pv._oryzae_MAFF_311018 1
Xanthomonas_oryzae_pv._oryzae_KACC_10331 1

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   11
Pan_troglodytes_69_2.1.4   (Chimpanzee)   10
Gorilla_gorilla_69_3.1   (Western gorilla)   12
Pongo_abelii_69_2   (Sumatran orangutan)   11
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   9
Macaca_mulatta_69_1   (Rhesus monkey)   12
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   15
Otolemur_garnettii_69_3   (Small-eared galago)   14
Microcebus_murinus_69_1   (Gray mouse lemur)   6
Rattus_norvegicus_69_3.4   (Norway rat)   13
Mus_musculus_69_38   (House mouse)   13
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   10
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   11
Cavia_porcellus_69_3   (Domestic guinea pig)   13
Oryctolagus_cuniculus_69_2   (Rabbit)   16
Ochotona_princeps_69   (American pika)   9
Tupaia_belangeri_69   (Northern tree shrew)   10
Sus_scrofa_69_10.2   (Pig)   16
Bos_taurus_69_3.1   (Cattle)   11
Vicugna_pacos_69_1   (Alpaca)   11
Tursiops_truncatus_69_1   (Bottlenose dolphin)   10
Mustela_putorius_furo_69_1.0   (Domestic ferret)   10
Ailuropoda_melanoleuca_69_1   (Giant panda)   11
Canis_familiaris_69_3.1   (Dog)   11
Felis_catus_69   (Domestic cat)   11
Equus_caballus_69_2   (Horse)   12
Myotis_lucifugus_69_2.0   (Little brown bat)   15
Pteropus_vampyrus_69_1   (Large flying fox)   12
Sorex_araneus_69_1   (European shrew)   12
Erinaceus_europaeus_69   (Western European hedgehog)   9
Procavia_capensis_69_1   (Cape rock hyrax)   10
Loxodonta_africana_69_3   (African savanna elephant)   11
Echinops_telfairi_69   (Small Madagascar hedgehog)   12
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   12
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   6
Macropus_eugenii_69_1.0   (Tammar wallaby)   9
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   11
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   11
Ornithorhynchus_anatinus_69_5   (Platypus)   21
Petromyzon_marinus_69_7.0   (Sea lamprey)   11
Meleagris_gallopavo_69_2   (Turkey)   17
Gallus_gallus_69_2   (Chicken)   11
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   12
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   10
Anolis_carolinensis_69_2.0   (Green anole)   11
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   9
Latimeria_chalumnae_69_1   (Coelacanth)   13
Gadus_morhua_69_1   (Atlantic cod)   12
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   17
Takifugu_rubripes_69_4   (Torafugu)   11
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   12
Oryzias_latipes_69_1   (Japanese medaka)   9
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   12
Oreochromis_niloticus_69_1.0   (Nile tilapia)   10
Danio_rerio_69_9   (Zebrafish)   13
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   10
Ciona_intestinalis_69   (Vase tunicate)   13
Drosophila_melanogaster_69_5   (Fruit fly)   5
Caenorhabditis_elegans_69_215   (Roundworm)   5
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   5
Arabidopsis_thaliana_10   (Thale cress)   1

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   99
Homo_sapiens__(NCBI_version)   (Human)   29
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   11
Heliconius_numata__(Incomplete) 2
Loa_loa_v3.3_(Request)   (Eye worm)   6
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   10
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   9
Moniliophthora_perniciosa_FA553__(Genome_survey) 7
Lotus_japonicus__(Early_assembly) 1
Malus_x_domestica_(Duplicate)   (Apple)   1
Ricinus_communis__(Early_assembly)   (Castor bean)   0
Nicotiana_benthamiana_0.4.4_(Early_draft) 0
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   0
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   0
Phoenix_dactylifera__(Early_draft)   (Date palm)   2
NCBI_plasmid_sequences_(Plasmids) 0
UniProt__viral_sequences_(Viral) 2
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 6
NCBI_viral_sequences_(Viral) 0
Protozoadb_2010_08_(Protozoadb) 32
PDB_chains_(SCOP_1.75)_(PDB) 2
TargetDB__(Targets) 24
STRING_v9.0.5_(STRING) 644
Uniprot_2018_03_genome 29238
NCBI_2017_08_genome 13179
Protein_Data_Bank_(all_PDB_sequenc) 3

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