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  Home > SCOP hierarchy > Domain combination - _gap_,50044,48403

Domain combinations for _gap_,50044,48403 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

50044 - SH3-domain
48403 - Ankyrin repeat

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   1
Tursiops_truncatus_76_1   (Bottlenose dolphin)   1
Pteropus_vampyrus_76_1   (Large flying fox)   1
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   1
Macropus_eugenii_76_1.0   (Tammar wallaby)   1
Octopus_bimaculoides_280 1
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   1
Symbiodinium_minutum_clade_B1_v1.2 0

Longest transcript per gene
Genome     Number
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   1
Tursiops_truncatus_69_1   (Bottlenose dolphin)   1
Pteropus_vampyrus_69_1   (Large flying fox)   1
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   1
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   1
Macropus_eugenii_69_1.0   (Tammar wallaby)   1

Others
Genome     Number
STRING_v9.0.5_(STRING) 2
NCBI_2017_08_genome 18
Uniprot_2018_03_genome 138

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.