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  Home > SCOP hierarchy > Domain combination - _gap_,50156,50156,50044,52540

Domain combinations for _gap_,50156,50156,50044,52540 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

50156 - PDZ domain-like
50156 - PDZ domain-like
50044 - SH3-domain
52540 - P-loop containing nucleoside triphosphate hydrolases

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   0
Ciona_intestinalis_76   (Vase tunicate)   1
Crassostrea_gigas_22   (Pacific oyster)   0
Bombyx_mori_   (Domestic silkworm)   0
Acyrthosiphon_pisum_   (Pea aphid)   0
Pristionchus_pacificus_ 1
Onchocerca_volvulus_22 0
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   0
Caenorhabditis_briggsae_2 0
Trichinella_spiralis_22 0

Longest transcript per gene
Genome     Number
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   0
Ciona_intestinalis_69   (Vase tunicate)   1

Others
Genome     Number
Loa_loa_v3.3_(Request)   (Eye worm)   0
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   0
STRING_v9.0.5_(STRING) 0
NCBI_2017_08_genome 2
Uniprot_2018_03_genome 56

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.