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  Home > SCOP hierarchy > Domain combination - _gap_,50156,64268,_gap_

Domain combinations for _gap_,50156,64268,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

50156 - PDZ domain-like
64268 - PX domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Macaca_mulatta_76_1   (Rhesus monkey)   2
Ochotona_princeps_76   (American pika)   1
Erinaceus_europaeus_76   (Western European hedgehog)   1
Latimeria_chalumnae_76_1   (Coelacanth)   1
Lepisosteus_oculatus_76   (Spotted gar)   1
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   1
Helobdella_robusta_ 2
Pristionchus_pacificus_ 1
Caenorhabditis_japonica_ 1
Caenorhabditis_brenneri_ 1
Caenorhabditis_remanei_ 1
Caenorhabditis_elegans_76_235   (Roundworm)   1
Caenorhabditis_briggsae_2 1

Strains
Genome     Number
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   1
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   1

Longest transcript per gene
Genome     Number
Macaca_mulatta_69_1   (Rhesus monkey)   1
Ochotona_princeps_69   (American pika)   1
Erinaceus_europaeus_69   (Western European hedgehog)   1
Latimeria_chalumnae_69_1   (Coelacanth)   1
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   1
Caenorhabditis_elegans_69_215   (Roundworm)   1

Others
Genome     Number
TargetDB__(Targets) 1
STRING_v9.0.5_(STRING) 6
NCBI_2017_08_genome 34
Uniprot_2018_03_genome 405

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.