SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain combinations for _gap_,50249,50249,50249,50249,50249,50249,50249,50249,50249,50249,50249,48452,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

50249 - Nucleic acid-binding proteins
50249 - Nucleic acid-binding proteins
50249 - Nucleic acid-binding proteins
50249 - Nucleic acid-binding proteins
50249 - Nucleic acid-binding proteins
50249 - Nucleic acid-binding proteins
50249 - Nucleic acid-binding proteins
50249 - Nucleic acid-binding proteins
50249 - Nucleic acid-binding proteins
50249 - Nucleic acid-binding proteins
50249 - Nucleic acid-binding proteins
48452 - TPR-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


Jump to [ Top of page · Domain combinations in individual genomes ]

Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Cryphonectria_parasitica_   (Chestnut blight fungus)   1
Pyrenophora_tritici-repentis_ 1
Ajellomyces_dermatitidis_SLH14081_ 1
Microsporum_canis_CBS_113480_ 1
Aspergillus_acidus_v1.0 1
Aspergillus_brasiliensis_v1.0 1
Aspergillus_carbonarius_ITEM_5010_ 1
Neosartorya_fischeri_NRRL_181_ 1
Aspergillus_tubingensis_v1.0 1
Aspergillus_oryzae_RIB40_ 1
Aspergillus_niger_22 1
Aspergillus_niger_ATCC_1015_ 1
Aspergillus_flavus_NRRL3357_ 1
Penicillium_marneffei_ATCC_18224_ 1
Pichia_pastoris_GS115_ 1
Saccharomyces_paradoxus_MIT 1
Schizosaccharomyces_cryophilus_OY26_22 1
Phaseolus_vulgaris_v186   (French bean)   1

Strains
Genome     Number
Paracoccidioides_brasiliensis_Pb01_ 1
Ajellomyces_dermatitidis_ER-3_ 1
Histoplasma_capsulatum_H88 1
Histoplasma_capsulatum_G186AR 1
Saccharomyces_cerevisiae_UC5 1
Saccharomyces_cerevisiae_PW5 1
Saccharomyces_cerevisiae_CLIB324 1
Saccharomyces_cerevisiae_T7 1
Saccharomyces_cerevisiae_VL3 1
Saccharomyces_cerevisiae_LalvinQA23 1
Saccharomyces_cerevisiae_JAY291 1
Saccharomyces_cerevisiae_AWRI1631 1
Saccharomyces_cerevisiae_T73 1
Saccharomyces_cerevisiae_CLIB215 1
Saccharomyces_cerevisiae_YJM789_ 1
Saccharomyces_cerevisiae_YJM789 1
Saccharomyces_cerevisiae_RM11-1a 1
Saccharomyces_cerevisiae_RM11-1a_ 1

Others
Genome     Number
STRING_v9.0.5_(STRING) 5
NCBI_2017_08_genome 18
Uniprot_2018_03_genome 3626

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]