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Domain combinations for _gap_,50249,52540,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

50249 - Nucleic acid-binding proteins
52540 - P-loop containing nucleoside triphosphate hydrolases

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   1
Macaca_mulatta_76_1   (Rhesus monkey)   1
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   1
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   1
Pteropus_vampyrus_76_1   (Large flying fox)   1
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   1
Macropus_eugenii_76_1.0   (Tammar wallaby)   1
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   1
Ornithorhynchus_anatinus_76_5   (Platypus)   1
Saccoglossus_kowalevskii_v3.0 1
Petromyzon_marinus_76_7.0   (Sea lamprey)   1
Latimeria_chalumnae_76_1   (Coelacanth)   1
Lepisosteus_oculatus_76   (Spotted gar)   1
Gadus_morhua_76_1   (Atlantic cod)   1
Takifugu_rubripes_76_4   (Torafugu)   1
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   1
Octopus_bimaculoides_280 2
Crassostrea_gigas_22   (Pacific oyster)   1
Helobdella_robusta_ 1
Danaus_plexippus_OGS1.0   (Monarch butterfly)   2
Linepithema_humile_v1.1   (Argentine ant)   1
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   1
Drosophila_grimshawi_1.3 1
Drosophila_suzukii 1
Drosophila_yakuba_1.3 1
Drosophila_simulans_1.3 2
Drosophila_sechellia_1.3 1
Drosophila_melanogaster_76_5   (Fruit fly)   1
Drosophila_erecta_1.3 1
Drosophila_ananassae_1.3 1
Sarcoptes_scabiei 1
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   1
Pristionchus_pacificus_ 1
Meloidogyne_incognita_   (Southern root-knot nematode)   2
Trichinella_spiralis_22 4
Taenia_solium_   (Pork tapeworm)   1
Mnemiopsis_leidyi   (Sea walnut)   1
Acropora_digitifera_v1.0 1
Trichoplax_adhaerens_ 1
Proterospongia_sp._ATCC_50818_ 1
Sphaeroforma_arctica_JP610_ 1
Mortierella_verticillata_NRRL_6337_ 1
Rhizopus_oryzae_RA_99-880_ 1
Rhizomucor_miehei_CAU432_ 0
Melampsora_laricis-populina_ 1
Pisolithus_microcarpus_441_v1.0 2
Hebeloma_cylindrosporum_h7_v2.0 1
Tulasnella_calospora_AL13/4D_v1.0 1
Chaetomium_globosum_CBS_148.51_ 1
Neurospora_tetrasperma_ 1
Neurospora_discreta_FGSC_8579_ 1
Cryphonectria_parasitica_   (Chestnut blight fungus)   1
Verticillium_albo-atrum_VaMs.102_ 1
Sclerotinia_sclerotiorum_ 1
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   1
Alternaria_brassicicola_ 1
Paracoccidioides_brasiliensis_Pb18_ 1
Aspergillus_acidus_v1.0 1
Aspergillus_tubingensis_v1.0 1
Aspergillus_niger_ATCC_1015_ 1
Tuber_melanosporum_Mel28_22 3
Tuber_melanosporum_Vittad_   (Perigord truffle)   3
Allomyces_macrogynus_ATCC_38327_ 2
Dictyostelium_purpureum_ 1
Pinus_taeda   (Loblolly pine)   2
Eucalyptus_grandis_v201   (Rose gum)   2
Theobroma_cacao_B97-61/B2_v1   (Cacao)   1
Gossypium_raimondii_v221 4
Citrus_clementina_v165 1
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   1
Glycine_max_v109   (Soybean)   1
Cucumis_sativus_v122   (Cucumber)   1
Fragaria_vesca_   (Wild strawberry)   1
Malus_domestica_v196   (Apple)   3
Prunus_persica_v139   (Peach)   2
Linum_usitatissimum_v200   (Flax)   3
Populus_trichocarpa_v156   (Black cottonwood)   1
Mimulus_guttatus_v140   (Spotted monkey flower)   2
Solanum_lycopersicum_v.2.3   (Tomato)   1
Solanum_tuberosum_   (Potato)   1
Actinidia_chinensis_Hongyang_ 1
Aquilegia_coerulea_v195 1
Triticum_urartu_22 3
Aegilops_tauschii_22 1
Oryza_barthii_22   (African wild rice)   4
Oryza_meridionalis_22 3
Oryza_glumaepatula_22 1
Oryza_punctata_22 1
Oryza_nivara_22 1
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   2
Sorghum_bicolor_   (Sorghum)   1
Musa_balbisiana   (Balbis banana)   1
Amborella_trichopoda_22 1
Asterochloris_sp._Cgr/DA1pho_v1.0 1
Chlorella_variabilis_sp._NC64A_ 2
Volvox_carteri_v199 1
Chlamydomonas_reinhardtii_4.0 1
Ostreococcus_sp._RCC809_ 1
Thecamonas_trahens_ATCC_50062_ 1
Bigelowiella_natans_CCMP2755_22 2
Cyanophora_paradoxa_ 0
Trypanosoma_vivax_ 1
Pythium_arrhenomanes_ATCC_12531_22 3
Pythium_irregulare_DAOM_BR486_22 1
Phytophthora_infestans_T30-4_ 1
Phytophthora_capsici_ 1
Hyaloperonospora_arabidopsidis_22 1
Paramecium_tetraurelia_ 2
Neospora_caninum 1
Theileria_parva__ 1
Theileria_annulata 1
Symbiodinium_minutum_clade_B1_v1.2 1
Trichomonas_vaginalis_ 1
Guillardia_theta_CCMP2712_v1.0_ 1
Emiliania_huxleyi_CCMP1516_ 4
Leifsonia_xyli_subsp._xyli_str._CTCB07 0
Cellulomonas_flavigena_DSM_20109 0
Clostridiales_genomosp._BVAB3_str._UPII9-5 1
Fibrobacter_succinogenes_subsp._succinogenes_S85 1
Sphaerochaeta_coccoides_DSM_17374 1
Thermococcus_kodakarensis_KOD1 1
Haloferax_mediterranei_ATCC_33500 1
Natronomonas_pharaonis_DSM_2160 1
Methanotorris_igneus_Kol_5 1
Methanocaldococcus_sp._FS406-22 2
Methanocaldococcus_fervens_AG86 3
Methanocaldococcus_vulcanius_M7 1
Methanocaldococcus_jannaschii_DSM_2661 2
Methanothermococcus_okinawensis_IH1 2
Methanococcus_aeolicus_Nankai-3 2
Methanococcus_maripaludis_C5 2
Methanococcus_voltae_A3 1
Methanococcus_vannielii_SB 1
Methanothermobacter_marburgensis_str._Marburg 1
Methanothermobacter_thermautotrophicus_str._Delta_H 1
Methanosphaera_stadtmanae_DSM_3091 1
Methanobrevibacter_sp._AbM4 1
Methanobrevibacter_ruminantium_M1 1
Methanobrevibacter_smithii_ATCC_35061 1
Complete_genome_sequence_of_Methanobacterium_sp._Mb1 1

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Strains
Genome     Number
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   1
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   2
Paracoccidioides_brasiliensis_Pb01_ 1
Coccidioides_immitis_RMSCC_3703_ 1
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   1
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   1
Neospora_caninum_Nc-Liverpool_6.2 1
Arthrospira_platensis_NIES-39 1
Leifsonia_xyli_subsp._cynodontis_DSM_46306 0
Fibrobacter_succinogenes_subsp._succinogenes_S85 1
Methanolobus_psychrophilus_R15 1
Pyrococcus_sp._NA2 1
Natrinema_pellirubrum_DSM_15624 1
Methanococcus_maripaludis_X1 2
Methanococcus_maripaludis_C6 6
Methanococcus_maripaludis_C7 2
Methanococcus_maripaludis_S2 3
Methanobacterium_sp._SWAN-1 1

Longest transcript per gene
Genome     Number
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   1
Pteropus_vampyrus_69_1   (Large flying fox)   1
Macropus_eugenii_69_1.0   (Tammar wallaby)   1
Ornithorhynchus_anatinus_69_5   (Platypus)   1
Petromyzon_marinus_69_7.0   (Sea lamprey)   1
Latimeria_chalumnae_69_1   (Coelacanth)   1
Gadus_morhua_69_1   (Atlantic cod)   1
Takifugu_rubripes_69_4   (Torafugu)   1
Drosophila_melanogaster_69_5   (Fruit fly)   1

Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   1
Encephalitozoon_intestinalis__(endoparasite) 4
Encephalitozoon_cuniculi_(endoparasite) 5
Malus_x_domestica_(Duplicate)   (Apple)   3
Ricinus_communis__(Early_assembly)   (Castor bean)   2
Nicotiana_benthamiana_0.4.4_(Early_draft) 2
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   1
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   1
Phoenix_dactylifera__(Early_draft)   (Date palm)   1
Guillardia_theta_(nucleomorph) 1
NCBI_plasmid_sequences_(Plasmids) 5
Protozoadb_2010_08_(Protozoadb) 4
TargetDB__(Targets) 7
STRING_v9.0.5_(STRING) 53
NCBI_2017_08_genome 515
Uniprot_2018_03_genome 5877

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