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Domain combinations for _gap_,50370,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

50370 - Ricin B-like lectins

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   0
Pan_troglodytes_76_2.1.4   (Chimpanzee)   0
Gorilla_gorilla_76_3.1   (Western gorilla)   1
Pongo_abelii_76_2   (Sumatran orangutan)   1
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   1
Papio_anubis_76   (Olive baboon)   0
Macaca_mulatta_76_1   (Rhesus monkey)   1
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   0
Otolemur_garnettii_76_3   (Small-eared galago)   0
Microcebus_murinus_76_1   (Gray mouse lemur)   0
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   1
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   0
Oryctolagus_cuniculus_76_2   (Rabbit)   0
Tupaia_belangeri_76   (Northern tree shrew)   2
Sus_scrofa_76_10.2   (Pig)   0
Bos_taurus_76_3.1   (Cattle)   0
Ovis_aries_76_3.1   (Sheep)   1
Vicugna_pacos_76_1   (Alpaca)   1
Tursiops_truncatus_76_1   (Bottlenose dolphin)   1
Mustela_putorius_furo_76_1.0   (Domestic ferret)   0
Ailuropoda_melanoleuca_76_1   (Giant panda)   1
Canis_familiaris_76_3.1   (Dog)   0
Felis_catus_76_6.2   (Domestic cat)   0
Equus_caballus_76_2   (Horse)   1
Myotis_lucifugus_76_2.0   (Little brown bat)   0
Pteropus_vampyrus_76_1   (Large flying fox)   1
Sorex_araneus_76_1   (European shrew)   1
Erinaceus_europaeus_76   (Western European hedgehog)   0
Procavia_capensis_76_1   (Cape rock hyrax)   1
Echinops_telfairi_76   (Small Madagascar hedgehog)   1
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   1
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   0
Ornithorhynchus_anatinus_76_5   (Platypus)   0
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   0
Anolis_carolinensis_76_2.0   (Green anole)   0
Latimeria_chalumnae_76_1   (Coelacanth)   1
Oikopleura_dioica 1
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   1
Adineta_vaga 3
Octopus_bimaculoides_280 0
Crassostrea_gigas_22   (Pacific oyster)   0
Lottia_gigantea_   (Owl limpet)   0
Helobdella_robusta_ 2
Capitella_sp._I_ 0
Heliconius_melpomene_   (Postman butterfly)   0
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   0
Drosophila_suzukii 1
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   0
Anopheles_gambiae_49_3j   (African malaria mosquito)   0
Tribolium_castaneum_3.0   (Red flour beetle)   0
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   0
Rhodnius_prolixus_22 0
Daphnia_pulex_   (Common water flea)   19
Pristionchus_pacificus_ 1
Onchocerca_volvulus_22 1
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   1
Caenorhabditis_japonica_ 1
Caenorhabditis_brenneri_ 1
Caenorhabditis_remanei_ 1
Caenorhabditis_elegans_76_235   (Roundworm)   1
Caenorhabditis_briggsae_2 1
Mnemiopsis_leidyi   (Sea walnut)   2
Acropora_digitifera_v1.0 2
Nematostella_vectensis_1.0   (Starlet sea anemone)   1
Hydra_vulgaris 1
Amphimedon_queenslandica 1
Trichoplax_adhaerens_ 0
Proterospongia_sp._ATCC_50818_ 3
Monosiga_brevicollis_ 8
Sphaeroforma_arctica_JP610_ 1
Capsaspora_owczarzaki_ATCC_30864_ 1
Mortierella_verticillata_NRRL_6337_ 0
Phycomyces_blakesleeanus_ 0
Rhizopus_oryzae_RA_99-880_ 0
Mucor_circinelloides_ 0
Rhizomucor_miehei_CAU432_ 1
Mixia_osmundae_IAM_14324_v1.0 1
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 1
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 1
Microbotryum_violaceum_22 1
Sphaerobolus_stellatus_v1.0 0
Piloderma_croceum_F_1598_v1.0 2
Coniophora_puteana 2
Paxillus_rubicundulus_Ve08.2h10_v1.0 0
Pisolithus_microcarpus_441_v1.0 1
Pisolithus_tinctorius_Marx_270_v1.0 0
Scleroderma_citrinum_Foug_A_v1.0 0
Coprinopsis_cinerea_okayama7_130_v3 0
Galerina_marginata_v1.0 3
Hebeloma_cylindrosporum_h7_v2.0 1
Laccaria_bicolor_S238N-H82_ 1
Stereum_hirsutum_FP-91666_SS1__v1.0 4
Heterobasidion_annosum_ 1
Gloeophyllum_trabeumv1.0 1
Punctularia_strigosozonata_v1.0 1
Sebacina_vermifera_MAFF_305830_v1.0 1
Postia_placenta_ 2
Wolfiporia_cocos_MD-104_SS10__v1.0 1
Fomitopsis_pinicolav1.0 1
Fomitopsis_pinicola_FP-58527_SS1_v3.0 1
Phanerochaete_chrysosporium_RP-78_2.1 1
Dichomitus_squalens 0
Trametes_versicolor_v1.0 0
Tremella_mesenterica_   (Witches' butter)   2
Daldinia_eschscholzii_EC12_v1.0 0
Apiospora_montagnei_NRRL_25634_v1.0 1
Magnaporthe_poae_ATCC_64411_22 0
Magnaporthe_grisea_70-15_ 0
Podospora_anserina_ 0
Sporotrichum_thermophile_ATCC_42464_ 0
Thielavia_terrestris_NRRL_8126_ 0
Chaetomium_globosum_CBS_148.51_ 0
Neurospora_tetrasperma_ 1
Neurospora_discreta_FGSC_8579_ 1
Neurospora_crassa_OR74A_ 1
Verticillium_albo-atrum_VaMs.102_ 1
Verticillium_dahliae_VdLs.17_ 0
Acremonium_alcalophilumv_1.0 1
Glomerella_graminicola_22 0
Trichoderma_asperellum_CBS_433.97_v1.0 0
Trichoderma_atroviride_ 0
Trichoderma_citrinoviride_v1.0 0
Trichoderma_reesei_1.2 0
Trichoderma_virens_Gv29-8_ 0
Trichoderma_longibrachiatum_ATCC_18648_v1.0 0
Trichoderma_harzianum_CBS_226.95_v1.0 0
Dothistroma_septosporum 1
Aspergillus_flavus_NRRL3357_ 1
Catenaria_anguillulae_PL171_v1.0 5
Spizellomyces_punctatus_DAOM_BR117_ 1
Dictyostelium_discoideum 2
Entamoeba_dispar_1.2 1
Entamoeba_histolytica_1 1
Selaginella_moellendorffii_ 0
Pinus_taeda   (Loblolly pine)   3
Theobroma_cacao_B97-61/B2_v1   (Cacao)   1
Gossypium_raimondii_v221 1
Medicago_truncatula_   (Barrel medic)   1
Glycine_max_v109   (Soybean)   0
Malus_domestica_v196   (Apple)   1
Actinidia_chinensis_Hongyang_ 1
Brachypodium_distachyon_   (Stiff brome)   1
Oryza_barthii_22   (African wild rice)   1
Oryza_glumaepatula_22 0
Oryza_punctata_22 0
Oryza_brachyantha_22   (Malo sina)   1
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   1
Oryza_sativa_v193   (Rice)   1
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   2
Panicum_virgatum_v202   (Switchgrass)   0
Sorghum_bicolor_   (Sorghum)   1
Musa_balbisiana   (Balbis banana)   1
Musa_acuminata_22   (Wild Malaysian banana)   2
Amborella_trichopoda_22 1
Asterochloris_sp._Cgr/DA1pho_v1.0 0
Volvox_carteri_f._nagariensis_ 2
Volvox_carteri_v199 1
Chlamydomonas_reinhardtii_4.0 2
Bigelowiella_natans_CCMP2755_22 1
Aureococcus_anophagefferens_ 1
Pythium_arrhenomanes_ATCC_12531_22 0
Pythium_aphanidermatum_DAOM_BR444_22 3
Pythium_vexans_DAOM_BR484_22 0
Phytophthora_ramorum_1.1   (Sudden oak death agent)   1
Phytophthora_sojae_1.1 2
Phaeodactylum_tricornutumCCAP_1055/1 1
Fragilariopsis_cylindrus 2
Thalassiosira_pseudonana_CCMP1335 2
Tetrahymena_thermophila_SB210_1_ 2
Ichthyophthirius_multifiliis_strain_G5_ 1
Symbiodinium_minutum_clade_B1_v1.2 8
Naegleria_gruberi_ 3
Trichomonas_vaginalis_ 2
Guillardia_theta_CCMP2712_v1.0_ 1
Emiliania_huxleyi_CCMP1516_ 0
Nostoc_sp._PCC_7524 0
Eggerthella_lenta_DSM_2243 1
Catenulispora_acidiphila_DSM_44928 1
Streptosporangium_roseum_DSM_43021 0
Kitasatospora_setae_KM-6054 0
Streptomyces_coelicolor_A3(2) 1
Streptomyces_avermitilis_MA-4680 2
Streptomyces_scabiei_87.22 2
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 0
Amycolatopsis_mediterranei_U32 0
Kribbella_flavida_DSM_17836 2
Salinispora_arenicola_CNS-205 0
Actinoplanes_sp._SE50/110 1
Actinoplanes_missouriensis_431 0
Sanguibacter_keddieii_DSM_10542 0
Microbacterium_testaceum_StLB037 0
Jonesia_denitrificans_DSM_20603 1
Brachybacterium_faecium_DSM_4810 1
[Cellvibrio]_gilvus_ATCC_13127 0
Arthrobacter_chlorophenolicus_A6 0
Renibacterium_salmoninarum_ATCC_33209 1
Bifidobacterium_longum_subsp._longum_JDM301 0
Arcanobacterium_haemolyticum_DSM_20595 0
Herpetosiphon_aurantiacus_DSM_785 1
Ruminococcus_albus_7 0
Caldicellulosiruptor_kronotskyensis_2002 0
Caldicellulosiruptor_hydrothermalis_108 0
Paenibacillus_sp._JDR-2 0
Haliscomenobacter_hydrossis_DSM_1100 1
Niastella_koreensis_GR20-10 1
Chitinophaga_pinensis_DSM_2588 1
Spirosoma_linguale_DSM_74 0
Aequorivita_sublithincola_DSM_14238 1
Zobellia_galactanivorans 0
Cellulophaga_lytica_DSM_7489 0
Granulicella_mallensis_MP5ACTX8 1
Sorangium_cellulosum_'So_ce_56' 2
Stigmatella_aurantiaca_DW4/3-1 0
Tistrella_mobilis_KA081020-065 1
Methylobacterium_extorquens_AM1 0
Methylobacterium_sp._4-46 0
Vibrio_furnissii_NCTC_11218 1

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Strains
Genome     Number
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   0
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   1
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   1
Hordeum_vulgare_22   (Domesticated barley)   0
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   0
Cyanothece_sp._ATCC_51142 0
Streptomyces_albus_J1074 1
Streptomyces_davawensis_JCM_4913 3
Streptomyces_fulvissimus_DSM_40593 1
Streptomyces_venezuelae_ATCC_10712 0
Streptomyces_collinus_Tu_365 2
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 0
Saccharothrix_espanaensis_DSM_44229 1
Amycolatopsis_mediterranei_RB 0
Amycolatopsis_mediterranei_S699 0
Amycolatopsis_mediterranei_S699 0
Actinoplanes_friuliensis_DSM_7358 0
Bifidobacterium_longum_NCC2705 0
Bifidobacterium_longum_DJO10A 0
Bifidobacterium_longum_subsp._infantis_157F 0
Bifidobacterium_longum_subsp._longum_KACC_91563 0
Bifidobacterium_longum_subsp._longum_BBMN68 0
Bifidobacterium_longum_subsp._longum_JCM_1217 0
Faecalibacterium_prausnitzii_L2-6 1
Ruminococcus_champanellensis_18P13 0
Desulfitobacterium_hafniense_DCB-2 1
Coprococcus_catus_GD/7 0
Bacillus_thuringiensis_MC28 1
Bacillus_cereus_Q1 1
Sorangium_cellulosum_So0157-2 1
Myxococcus_stipitatus_DSM_14675 1
Burkholderia_sp._YI23 1
Simiduia_agarivorans_SA1_=_DSM_21679 1
Salmonella_enterica_subsp._arizonae_serovar_62:z4,z23:--_str._RSK2980 1
Escherichia_coli_IHE3034 1
Escherichia_coli_APEC_O1 1
Methanolobus_psychrophilus_R15 0

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   0
Pan_troglodytes_69_2.1.4   (Chimpanzee)   0
Gorilla_gorilla_69_3.1   (Western gorilla)   1
Pongo_abelii_69_2   (Sumatran orangutan)   1
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   1
Macaca_mulatta_69_1   (Rhesus monkey)   0
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   0
Otolemur_garnettii_69_3   (Small-eared galago)   0
Microcebus_murinus_69_1   (Gray mouse lemur)   0
Mus_musculus_69_38   (House mouse)   0
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   1
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   0
Oryctolagus_cuniculus_69_2   (Rabbit)   1
Tupaia_belangeri_69   (Northern tree shrew)   2
Sus_scrofa_69_10.2   (Pig)   0
Bos_taurus_69_3.1   (Cattle)   0
Vicugna_pacos_69_1   (Alpaca)   1
Tursiops_truncatus_69_1   (Bottlenose dolphin)   1
Mustela_putorius_furo_69_1.0   (Domestic ferret)   0
Ailuropoda_melanoleuca_69_1   (Giant panda)   1
Canis_familiaris_69_3.1   (Dog)   0
Felis_catus_69   (Domestic cat)   1
Equus_caballus_69_2   (Horse)   1
Myotis_lucifugus_69_2.0   (Little brown bat)   0
Pteropus_vampyrus_69_1   (Large flying fox)   1
Sorex_araneus_69_1   (European shrew)   1
Erinaceus_europaeus_69   (Western European hedgehog)   0
Procavia_capensis_69_1   (Cape rock hyrax)   1
Echinops_telfairi_69   (Small Madagascar hedgehog)   1
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   1
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   0
Ornithorhynchus_anatinus_69_5   (Platypus)   0
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   0
Anolis_carolinensis_69_2.0   (Green anole)   0
Latimeria_chalumnae_69_1   (Coelacanth)   1
Caenorhabditis_elegans_69_215   (Roundworm)   1

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   0
Homo_sapiens__(NCBI_version)   (Human)   0
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   0
Loa_loa_v3.3_(Request)   (Eye worm)   2
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   1
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   1
Moniliophthora_perniciosa_FA553__(Genome_survey) 1
Encephalitozoon_intestinalis__(endoparasite) 1
Encephalitozoon_cuniculi_(endoparasite) 2
Lotus_japonicus__(Early_assembly) 1
Malus_x_domestica_(Duplicate)   (Apple)   1
NCBI_plasmid_sequences_(Plasmids) 4
TargetDB__(Targets) 2
NCBI_viral_sequences_(Viral) 3
Protozoadb_2010_08_(Protozoadb) 8
STRING_v9.0.5_(STRING) 61
Uniprot_2018_03_genome 6350
NCBI_2017_08_genome 1794

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