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Domain combinations for _gap_,50677,52374,_gap_,47323,47323 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

50677 - ValRS/IleRS/LeuRS editing domain
52374 - Nucleotidylyl transferase
47323 - Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
47323 - Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Tupaia_belangeri_76   (Northern tree shrew)   0
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   0
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   0
Oryza_glaberrima   (African rice)   0
Bigelowiella_natans_CCMP2755_22 0
Thermobaculum_terrenum_ATCC_BAA-798 1
Acaryochloris_marina_MBIC11017 0
Microcoleus_sp._PCC_7113 0
Trichodesmium_erythraeum_IMS101 0
Gloeocapsa_sp._PCC_7428 0
Halothece_sp._PCC_7418 0
Nostoc_sp._PCC_7524 0
Conexibacter_woesei_DSM_14684 1
Kineococcus_radiotolerans_SRS30216 1
Stackebrandtia_nassauensis_DSM_44728 1
Saccharopolyspora_erythraea_NRRL_2338 1
Amycolatopsis_mediterranei_U32 1
Nocardioides_sp._JS614 1
Micromonospora_sp._L5 1
Micromonospora_aurantiaca_ATCC_27029 1
Actinoplanes_sp._SE50/110 1
Rhodococcus_erythropolis_PR4 1
Nocardia_cyriacigeorgica_GUH-2 1
Nocardia_farcinica_IFM_10152 1
Mycobacterium_ulcerans_Agy99 1
Mycobacterium_chubuense_NBB4 1
Mycobacterium_marinum_M 1
Corynebacterium_kroppenstedtii_DSM_44385 1
Corynebacterium_ulcerans_0102 1
Corynebacterium_glutamicum_R 1
Corynebacterium_diphtheriae_NCTC_13129 1
Tropheryma_whipplei_TW08/27 1
Sanguibacter_keddieii_DSM_10542 1
Jonesia_denitrificans_DSM_20603 1
[Cellvibrio]_gilvus_ATCC_13127 1
Arthrobacter_arilaitensis_Re117 1
Rothia_dentocariosa_ATCC_17931 1
Mobiluncus_curtisii_ATCC_43063 1
Marinithermus_hydrothermalis_DSM_14884 1
Anaerococcus_prevotii_DSM_20548 1
Selenomonas_sputigena_ATCC_35185 1
Selenomonas_ruminantium_subsp._lactilytica_TAM6421 1
Clostridium_clariflavum_DSM_19732 1
butyrate-producing_bacterium_SS3/4 1
Desulfosporosinus_acidiphilus_SJ4 1
Clostridium_lentocellum_DSM_5427 1
Candidatus_Arthromitus_sp._SFB-mouse-Japan 1
Clostridium_novyi_NT 1
Clostridium_ljungdahlii_DSM_13528 1
Clostridium_kluyveri_DSM_555 1
Clostridium_beijerinckii_NCIMB_8052 1
Clostridium_tetani_E88 1
Clostridium_perfringens_ATCC_13124 1
Clostridium_cellulovorans_743B 1
Clostridium_botulinum_A_str._ATCC_3502 1
Clostridium_acetobutylicum_ATCC_824 1
Brevibacillus_brevis_NBRC_100599 1
Paenibacillus_terrae_HPL-003 1
Paenibacillus_polymyxa_M1 1
Oceanobacillus_iheyensis_HTE831 1
Bacillus_weihenstephanensis_KBAB4 1
Bacillus_thuringiensis_str._Al_Hakam 1
Bacillus_cereus_03BB102 1
Bacillus_anthracis_str._A0248 1
Bacillus_cellulosilyticus_DSM_2522 1
Melioribacter_roseus_P3M 1
Chlorobium_luteolum_DSM_273 1
Chlorobium_limicola_DSM_245 1
Chlorobium_tepidum_TLS 1
Candidatus_Amoebophilus_asiaticus_5a2 1
Cytophaga_hutchinsonii_ATCC_33406 1
Runella_slithyformis_DSM_19594 1
Odoribacter_splanchnicus_DSM_20712 1
Candidatus_Azobacteroides_pseudotrichonymphae_genomovar._CFP2 1
Bacteroides_sp._CF50 1
Prevotella_denticola_F0289 1
Prevotella_ruminicola_23 1
Porphyromonas_asaccharolytica_DSM_20707 1
Pedobacter_saltans_DSM_12145 1
Sphingobacterium_sp._21 1
Lacinutrix_sp._5H-3-7-4 1
Robiginitalea_biformata_HTCC2501 1
Muricauda_ruestringensis_DSM_13258 1
Cellulophaga_algicola_DSM_14237 1
Polaribacter_sp._MED152 1
Ornithobacterium_rhinotracheale_DSM_15997 1
Capnocytophaga_canimorsus_Cc5 1
Capnocytophaga_ochracea_DSM_7271 1
Flavobacterium_indicum_GPTSA100-9 1
Flavobacterium_psychrophilum_JIP02/86 1
Flavobacterium_columnare_ATCC_49512 1
Flavobacterium_johnsoniae_UW101 1
Chlamydophila_pecorum_E58 1
Chlamydia_muridarum_Nigg 1
Chlamydia_trachomatis_B/Jali20/OT 1
Planctomyces_limnophilus_DSM_3776 0
Borrelia_garinii_PBi 1
Borrelia_bissettii_DN127 1
Borrelia_afzelii_PKo 1
Borrelia_burgdorferi_B31 1
Borrelia_turicatae_91E135 1
Borrelia_hermsii_DAH 1
Sphaerochaeta_coccoides_DSM_17374 1
Spirochaeta_caldaria_DSM_7334 1
Mesotoga_prima_MesG1.Ag.4.2 1
Candidatus_Saccharibacteria_bacterium_RAAC3_TM7_1 1
Bacteriovorax_marinus_SJ 1
Bdellovibrio_bacteriovorus_HD100 1
Candidatus_Midichloria_mitochondrii_IricVA 1
Wolbachia_endosymbiont_of_Culex_quinquefasciatus_Pel 1
Wolbachia_sp._wRi 1
Ehrlichia_canis_str._Jake 1
Marinomonas_sp._MWYL1 1
Acidilobus_saccharovorans_345-15 1
Fervidicoccus_fontis_Kam940 1
Pyrolobus_fumarii_1A 1
Hyperthermus_butylicus_DSM_5456 1
Thermogladius_cellulolyticus_1633 1
Ignisphaera_aggregans_DSM_17230 1
Aeropyrum_pernix_K1 1
Ignicoccus_hospitalis_KIN4/I 1
Staphylothermus_hellenicus_DSM_12710 1
Staphylothermus_marinus_F1 1
Metallosphaera_cuprina_Ar-4 1
Metallosphaera_sedula_DSM_5348 1
Acidianus_hospitalis_W1 1
Sulfolobus_tokodaii_str._7 1
Sulfolobus_islandicus_Y.N.15.51 1
Sulfolobus_solfataricus_P2 1
Sulfolobus_acidocaldarius_DSM_639 1
Vulcanisaeta_moutnovskia_768-28 1
Vulcanisaeta_distributa_DSM_14429 1
Pyrobaculum_sp._1860 1
Pyrobaculum_calidifontis_JCM_11548 1
Pyrobaculum_arsenaticum_DSM_13514 1
Pyrobaculum_oguniense_TE7 1
Thermoproteus_neutrophilus_V24Sta 1
Pyrobaculum_aerophilum_str._IM2 1
Pyrobaculum_islandicum_DSM_4184 1
Thermoproteus_uzoniensis_768-20 1
Methanocella_arvoryzae_MRE50 1
Methanocella_conradii_HZ254 1
Methanosaeta_thermophila_PT 1
Methanosalsum_zhilinae_DSM_4017 1
Methanohalobium_evestigatum_Z-7303 1
Methanopyrus_kandleri_AV19 1
Thermococcus_sp._4557 1
Thermococcus_onnurineus_NA1 1
Thermococcus_kodakarensis_KOD1 1
Thermococcus_gammatolerans_EJ3 1
Thermococcus_barophilus_MP 1
Pyrococcus_sp._ST04 1
Pyrococcus_yayanosii_CH1 1
Pyrococcus_horikoshii_OT3 1
Pyrococcus_abyssi_GE5 1
Pyrococcus_furiosus_COM1 1
Thermoplasma_volcanium_GSS1 1
Thermoplasma_acidophilum_DSM_1728 1
Picrophilus_torridus_DSM_9790 1
Salinarchaeum_sp._Harcht-Bsk1 1
Halopiger_xanaduensis_SH-6 1
Haloterrigena_turkmenica_DSM_5511 1
Natrialba_magadii_ATCC_43099 1
Halorubrum_lacusprofundi_ATCC_49239 1
Halogeometricum_borinquense_DSM_11551 1
Haloferax_mediterranei_ATCC_33500 1
Haloferax_volcanii_DS2 1
Halomicrobium_mukohataei_DSM_12286 1
Halorhabdus_utahensis_DSM_12940 1
Haloarcula_hispanica_ATCC_33960 1
Haloarcula_marismortui_ATCC_43049 1
Halalkalicoccus_jeotgali_B3 1
Halobacterium_salinarum_R1 1
Halobacterium_sp._NRC-1 1
Methanothermus_fervidus_DSM_2088 1
Aciduliprofundum_sp._MAR08-339 1
Aciduliprofundum_boonei_T469 1

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Strains
Genome     Number
Chamaesiphon_minutus_PCC_6605 0
Dactylococcopsis_salina_PCC_8305 0
Oscillatoria_acuminata_PCC_6304 1
Cyanothece_sp._PCC_7425 0
Cyanobacterium_aponinum_PCC_10605 0
Cyanobacterium_stanieri_PCC_7202 0
Amycolatopsis_mediterranei_RB 1
Amycolatopsis_mediterranei_S699 1
Amycolatopsis_mediterranei_S699 1
Amycolatopsis_orientalis_HCCB10007 1
Rhodococcus_erythropolis_CCM2595 1
Nocardia_brasiliensis_ATCC_700358 2
Mycobacterium_liflandii_128FXT 1
Mycobacterium_kansasii_ATCC_12478 1
Corynebacterium_argentoratense_DSM_44202 1
Corynebacterium_callunae_DSM_20147 1
Corynebacterium_glutamicum_MB001 1
Corynebacterium_glutamicum_SCgG2 1
Corynebacterium_glutamicum_SCgG1 1
Corynebacterium_glutamicum_ATCC_13032 1
Corynebacterium_glutamicum_ATCC_13032 1
Corynebacterium_glutamicum_ATCC_13032 1
Corynebacterium_diphtheriae_BH8 1
Corynebacterium_diphtheriae_INCA_402 1
Corynebacterium_diphtheriae_VA01 1
Corynebacterium_diphtheriae_HC04 1
Corynebacterium_diphtheriae_HC03 1
Corynebacterium_diphtheriae_HC02 1
Corynebacterium_diphtheriae_HC01 1
Corynebacterium_diphtheriae_241 1
Corynebacterium_diphtheriae_CDCE_8392 1
Corynebacterium_diphtheriae_PW8 1
Corynebacterium_diphtheriae_C7_(beta) 1
Corynebacterium_diphtheriae_31A 1
Tropheryma_whipplei_str._Twist 1
Bifidobacterium_longum_DJO10A 1
Bifidobacterium_longum_subsp._infantis_157F 1
Bifidobacterium_longum_subsp._infantis_ATCC_15697_=_JCM_1222 1
Bifidobacterium_longum_subsp._infantis_ATCC_15697_=_JCM_1222 1
Bifidobacterium_longum_subsp._longum_KACC_91563 1
Bifidobacterium_longum_subsp._longum_JCM_1217 1
Bifidobacterium_animalis_subsp._animalis_ATCC_25527 1
Desulfosporosinus_meridiei_DSM_13257 1
Candidatus_Arthromitus_sp._SFB-rat-Yit 1
Candidatus_Arthromitus_sp._SFB-mouse-Yit 1
Clostridium_saccharobutylicum_DSM_13864 1
Clostridium_autoethanogenum_DSM_10061 1
Clostridium_saccharoperbutylacetonicum_N1-4(HMT) 1
Clostridium_kluyveri_NBRC_12016 1
Clostridium_tetani_genome_12124569 1
Clostridium_perfringens_SM101 1
Clostridium_perfringens_str._13 1
Clostridium_pasteurianum_BC1 1
Clostridium_botulinum_H04402_065 1
Clostridium_botulinum_BKT015925 1
Clostridium_botulinum_F_str._230613 1
Clostridium_botulinum_F_str._Langeland 1
Clostridium_botulinum_E3_str._Alaska_E43 1
Clostridium_botulinum_B1_str._Okra 1
Clostridium_botulinum_Ba4_str._657 1
Clostridium_botulinum_A2_str._Kyoto 1
Clostridium_botulinum_A3_str._Loch_Maree 1
Clostridium_botulinum_A_str._Hall 1
Clostridium_botulinum_A_str._ATCC_19397 1
Clostridium_acetobutylicum_DSM_1731 1
Clostridium_acetobutylicum_EA_2018 1
Paenibacillus_sp._Y412MC10 1
Paenibacillus_polymyxa_CR1 1
Paenibacillus_polymyxa_SC2 1
Paenibacillus_polymyxa_E681 1
Bacillus_toyonensis_BCT-7112 1
Bacillus_thuringiensis_MC28 1
Bacillus_thuringiensis_serovar_chinensis_CT-43 1
Bacillus_thuringiensis_Bt407 1
Bacillus_thuringiensis_serovar_konkukian_str._97-27 1
Bacillus_thuringiensis_BMB171 1
Bacillus_thuringiensis_serovar_finitimus_YBT-020 1
Bacillus_thuringiensis_serovar_thuringiensis_str._IS5056 1
Bacillus_cereus_FRI-35 1
Bacillus_cereus_biovar_anthracis_str._CI 1
Bacillus_cereus_AH820 1
Bacillus_cereus_AH187 1
Bacillus_cereus_B4264 1
Bacillus_cereus_Q1 1
Bacillus_cereus_F837/76 1
Bacillus_cereus_NC7401 1
Bacillus_cereus_E33L 1
Bacillus_cereus_ATCC_14579 1
Bacillus_cereus_ATCC_10987 1
Bacillus_anthracis_str._H9401 1
Bacillus_anthracis_str._CDC_684 1
Bacillus_anthracis_str._'Ames_Ancestor' 1
Bacillus_anthracis_str._Sterne 1
Bacillus_anthracis_str._Ames 1
Bacillus_megaterium_WSH-002 1
Bacillus_megaterium_QM_B1551 1
Staphylococcus_aureus_ST228/16125 1
Staphylococcus_aureus_subsp._aureus_USA300_FPR3757 1
Echinicola_vietnamensis_DSM_17526 1
Emticicia_oligotrophica_DSM_17448 1
Prevotella_sp._oral_taxon_299_str._F0039 1
Prevotella_dentalis_DSM_3688 1
Chlamydia_pecorum_P787 1
Chlamydia_pecorum_PV3056/3 1
Chlamydia_trachomatis_C/TW-3 1
Chlamydia_trachomatis_L2/434/Bu(f) 1
Chlamydia_trachomatis_L2/434/Bu(i) 1
Chlamydia_trachomatis_IU888 1
Chlamydia_trachomatis_IU824 1
Chlamydia_trachomatis_L2b/Canada2 1
Chlamydia_trachomatis_L2b/Canada1 1
Chlamydia_trachomatis_L3/404/LN 1
Chlamydia_trachomatis_L2b/Ams5 1
Chlamydia_trachomatis_L2b/Ams4 1
Chlamydia_trachomatis_L2b/Ams3 1
Chlamydia_trachomatis_L2b/Ams2 1
Chlamydia_trachomatis_L2b/Ams1 1
Chlamydia_trachomatis_L2b/795 1
Chlamydia_trachomatis_L2b/CV204 1
Chlamydia_trachomatis_L2b/LST 1
Chlamydia_trachomatis_L2b/UCH-2 1
Chlamydia_trachomatis_L2b/8200/07 1
Chlamydia_trachomatis_L2/25667R 1
Chlamydia_trachomatis_L1/224 1
Chlamydia_trachomatis_L1/115 1
Chlamydia_trachomatis_L1/440/LN 1
Chlamydia_trachomatis_K/SotonK1 1
Chlamydia_trachomatis_Ia/SotonIa3 1
Chlamydia_trachomatis_Ia/SotonIa1 1
Chlamydia_trachomatis_G/SotonG1 1
Chlamydia_trachomatis_F/SotonF3 1
Chlamydia_trachomatis_F/SW5 1
Chlamydia_trachomatis_F/SW4 1
Chlamydia_trachomatis_E/SotonE8 1
Chlamydia_trachomatis_E/SotonE4 1
Chlamydia_trachomatis_E/SW3 1
Chlamydia_trachomatis_D/SotonD6 1
Chlamydia_trachomatis_D/SotonD5 1
Chlamydia_trachomatis_D/SotonD1 1
Chlamydia_trachomatis_A/5291 1
Chlamydia_trachomatis_A/363 1
Chlamydia_trachomatis_RC-J/971 1
Chlamydia_trachomatis_RC-L2/55 1
Chlamydia_trachomatis_J/6276tet1 1
Chlamydia_trachomatis_RC-J/966 1
Chlamydia_trachomatis_RC-J(s)/122 1
Chlamydia_trachomatis_RC-F(s)/342 1
Chlamydia_trachomatis_RC-L2(s)/3 1
Chlamydia_trachomatis_RC-J/953 1
Chlamydia_trachomatis_RC-J943 1
Chlamydia_trachomatis_RC-Fs852 1
Chlamydia_trachomatis_RC-L2s46 1
Chlamydia_trachomatis_RC-F69 1
Chlamydia_trachomatis_L2c 1
Chlamydia_trachomatis_D-LC 1
Chlamydia_trachomatis_D-EC 1
Chlamydia_trachomatis_G/9301 1
Chlamydia_trachomatis_G/11074 1
Chlamydia_trachomatis_G/11222 1
Chlamydia_trachomatis_G/9768 1
Chlamydia_trachomatis_E/150 1
Chlamydia_trachomatis_E/11023 1
Chlamydia_trachomatis_B/TZ1A828/OT 1
Chlamydia_trachomatis_Sweden2 1
Chlamydia_trachomatis_E/Bour 1
Chlamydia_trachomatis_A2497 1
Chlamydia_trachomatis_A2497 1
Chlamydia_trachomatis_L2b/UCH-1/proctitis 1
Chlamydia_trachomatis_434/Bu 1
Chlamydia_trachomatis_A/HAR-13 1
Chlamydia_trachomatis_D/UW-3/CX 1
Borrelia_garinii_NMJW1 1
Borrelia_garinii_BgVir 1
Borrelia_afzelii_HLJ01 1
Borrelia_afzelii_PKo 1
Borrelia_burgdorferi_CA382 1
Borrelia_burgdorferi_JD1 1
Borrelia_burgdorferi_N40 1
Borrelia_burgdorferi_ZS7 1
Bdellovibrio_bacteriovorus_str._Tiberius 1
Wolbachia_endosymbiont_of_Drosophila_melanogaster 1
Wolbachia_endosymbiont_of_Onchocerca_ochengi_str._Adamawa_Cameroon 1
Wolbachia_endosymbiont_strain_TRS_of_Brugia_malayi 1
Wolbachia_endosymbiont_of_Drosophila_simulans_wHa 1
Wolbachia_endosymbiont_of_Drosophila_simulans_wNo 1
Caldisphaera_lagunensis_DSM_15908 1
Sulfolobus_islandicus_LAL14/1 1
Sulfolobus_islandicus_REY15A 1
Sulfolobus_islandicus_HVE10/4 1
Sulfolobus_islandicus_Y.G.57.14 1
Sulfolobus_islandicus_M.16.27 1
Sulfolobus_islandicus_M.14.25 1
Sulfolobus_islandicus_M.16.4 1
Sulfolobus_islandicus_L.D.8.5 1
Sulfolobus_solfataricus_98/2 1
Sulfolobus_acidocaldarius_SUSAZ 1
Sulfolobus_acidocaldarius_Ron12/I 1
Sulfolobus_acidocaldarius_N8 1
Thermococcus_sp._AM4 1
Thermococcus_litoralis_DSM_5473 1
Pyrococcus_sp._NA2 1
Pyrococcus_furiosus_DSM_3638 1
Candidatus_Methanomethylophilus_alvus_Mx1201 1
Ferroplasma_acidarmanus_fer1 1
Halovivax_ruber_XH-70 1
Natrinema_pellirubrum_DSM_15624 1
Natronococcus_occultus_SP4 1
Natronobacterium_gregoryi_SP2 1
Halorhabdus_tiamatea_SARL4B 1
Natronomonas_moolapensis_8.8.11 1
Haloarcula_hispanica_N601 1

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Longest transcript per gene
Genome     Number
Tupaia_belangeri_69   (Northern tree shrew)   0
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   0

Others
Genome     Number
Wolbachia_endosymbiont_of_Brugia_malayi_v1.0_(Broad_Institute) 1
NCBI_plasmid_sequences_(Plasmids) 10
TargetDB__(Targets) 11
STRING_v9.0.5_(STRING) 123
Uniprot_2018_03_genome 49533
NCBI_2017_08_genome 4676

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