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Domain combinations for _gap_,50729,47473,51695,49562 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

50729 - PH domain-like
47473 - EF-hand
51695 - PLC-like phosphodiesterases
49562 - C2 domain (Calcium/lipid-binding domain, CaLB)

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   1
Pan_troglodytes_76_2.1.4   (Chimpanzee)   0
Pongo_abelii_76_2   (Sumatran orangutan)   0
Papio_anubis_76   (Olive baboon)   1
Macaca_mulatta_76_1   (Rhesus monkey)   2
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   1
Otolemur_garnettii_76_3   (Small-eared galago)   1
Rattus_norvegicus_76_5.0   (Norway rat)   1
Mus_musculus_76_38   (House mouse)   1
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   1
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   0
Sus_scrofa_76_10.2   (Pig)   1
Bos_taurus_76_3.1   (Cattle)   1
Ovis_aries_76_3.1   (Sheep)   1
Mustela_putorius_furo_76_1.0   (Domestic ferret)   0
Canis_familiaris_76_3.1   (Dog)   1
Felis_catus_76_6.2   (Domestic cat)   1
Pteropus_vampyrus_76_1   (Large flying fox)   1
Procavia_capensis_76_1   (Cape rock hyrax)   1
Loxodonta_africana_76_3   (African savanna elephant)   0
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   1
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   0
Gallus_gallus_76_4   (Chicken)   0
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   0
Ficedula_albicollis_76_1.0   (Collared flycatcher)   1
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   1
Anolis_carolinensis_76_2.0   (Green anole)   1
Latimeria_chalumnae_76_1   (Coelacanth)   0
Lepisosteus_oculatus_76   (Spotted gar)   0
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   0
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   0
Poecilia_formosa_76   (Amazon molly)   0
Oreochromis_niloticus_76_1.0   (Nile tilapia)   0
Astyanax_mexicanus_76   (Mexican tetra)   0
Danio_rerio_76_9   (Zebrafish)   0
Adineta_vaga 2
Crassostrea_gigas_22   (Pacific oyster)   0
Helobdella_robusta_ 0
Capitella_sp._I_ 0
Tribolium_castaneum_3.0   (Red flour beetle)   0
Caenorhabditis_japonica_ 0
Caenorhabditis_brenneri_ 0
Caenorhabditis_remanei_ 0
Caenorhabditis_elegans_76_235   (Roundworm)   0
Caenorhabditis_briggsae_2 0
Amphimedon_queenslandica 0
Trichoplax_adhaerens_ 0
Proterospongia_sp._ATCC_50818_ 0
Mortierella_verticillata_NRRL_6337_ 0
Daldinia_eschscholzii_EC12_v1.0 0
Apiospora_montagnei_NRRL_25634_v1.0 1
Sporotrichum_thermophile_ATCC_42464_ 0
Thielavia_terrestris_NRRL_8126_ 1
Chaetomium_globosum_CBS_148.51_ 1
Cryphonectria_parasitica_   (Chestnut blight fungus)   0
Acremonium_alcalophilumv_1.0 0
Glomerella_graminicola_22 0
Nectria_haematococca_mpVI_ 0
Fusarium_oxysporum_f._sp._lycopersici_4286_ 2
Fusarium_verticillioides_7600_ 0
Trichoderma_reesei_1.2 0
Botrytis_cinerea_B05.10_ 0
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   0
Stagonospora_nodorum_ 0
Aspergillus_acidus_v1.0 0
Aspergillus_nidulans_FGSC_A4_ 0
Aspergillus_sydowii_v1.0 0
Aspergillus_versicolor_v1.0 0
Aspergillus_tubingensis_v1.0 0
Tuber_melanosporum_Mel28_22 0
Tuber_melanosporum_Vittad_   (Perigord truffle)   0
Pichia_stipitis_CBS_6054_ 1
Wickerhamomyces_anomalus 1
Yarrowia_lipolytica_CLIB122 1
Candida_lusitaniae_ATCC_42720_ 1
Candida_glabrata_CBS138 1
Kluyveromyces_thermotolerans_CBS_6340 1
Lachancea_kluyveri_ 1
Kluyveromyces_waltii 1
Ashbya_gossypii_ATCC_10895_ 1
Saccharomyces_paradoxus_MIT 1
Saccharomyces_cerevisiae_76   (Baker's yeast)   1
Schizosaccharomyces_cryophilus_OY26_22 1
Schizosaccharomyces_octosporus_yFS286_ 1
Schizosaccharomyces_japonicus_yFS275_ 1
Schizosaccharomyces_pombe   (Fission yeast)   1
Allomyces_macrogynus_ATCC_38327_ 1
Spizellomyces_punctatus_DAOM_BR117_ 0
Cryptosporidium_hominis 1
Cryptosporidium_muris 1
Cryptosporidium_parvum_Iowa_II 1

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   0
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   1
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   0
Saccharomyces_cerevisiae_UC5 1
Saccharomyces_cerevisiae_PW5 1
Saccharomyces_cerevisiae_CBS7960 1
Saccharomyces_cerevisiae_YJM269 1
Saccharomyces_cerevisiae_T7 1
Saccharomyces_cerevisiae_FostersB 1
Saccharomyces_cerevisiae_LalvinQA23 1
Saccharomyces_cerevisiae_Sigma1278b 1
Saccharomyces_cerevisiae_W303 1
Saccharomyces_cerevisiae_JAY291 1
Saccharomyces_cerevisiae_M22 1
Saccharomyces_cerevisiae_CLIB215 1
Saccharomyces_cerevisiae_YJM789_ 1
Saccharomyces_cerevisiae_YJM789 1
Saccharomyces_cerevisiae_RM11-1a 1
Saccharomyces_cerevisiae_RM11-1a_ 1
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   1
Schizosaccharomyces_pombe_972h-_ 1

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   1
Pan_troglodytes_69_2.1.4   (Chimpanzee)   0
Pongo_abelii_69_2   (Sumatran orangutan)   0
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   0
Macaca_mulatta_69_1   (Rhesus monkey)   2
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   1
Otolemur_garnettii_69_3   (Small-eared galago)   1
Rattus_norvegicus_69_3.4   (Norway rat)   1
Mus_musculus_69_38   (House mouse)   1
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   1
Oryctolagus_cuniculus_69_2   (Rabbit)   0
Sus_scrofa_69_10.2   (Pig)   1
Bos_taurus_69_3.1   (Cattle)   1
Mustela_putorius_furo_69_1.0   (Domestic ferret)   0
Canis_familiaris_69_3.1   (Dog)   1
Pteropus_vampyrus_69_1   (Large flying fox)   1
Procavia_capensis_69_1   (Cape rock hyrax)   1
Loxodonta_africana_69_3   (African savanna elephant)   0
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   0
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   0
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   1
Latimeria_chalumnae_69_1   (Coelacanth)   0
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   0
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   0
Oreochromis_niloticus_69_1.0   (Nile tilapia)   0
Danio_rerio_69_9   (Zebrafish)   0
Caenorhabditis_elegans_69_215   (Roundworm)   0
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   1

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   1
Homo_sapiens__(NCBI_version)   (Human)   1
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   1
Protozoadb_2010_08_(Protozoadb) 5
TargetDB__(Targets) 0
STRING_v9.0.5_(STRING) 16
Uniprot_2018_03_genome 1965
NCBI_2017_08_genome 167

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