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Domain combinations for _gap_,50729,47473,51695,49562,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

50729 - PH domain-like
47473 - EF-hand
51695 - PLC-like phosphodiesterases
49562 - C2 domain (Calcium/lipid-binding domain, CaLB)

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   2
Pan_troglodytes_76_2.1.4   (Chimpanzee)   1
Pongo_abelii_76_2   (Sumatran orangutan)   1
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   2
Otolemur_garnettii_76_3   (Small-eared galago)   1
Rattus_norvegicus_76_5.0   (Norway rat)   1
Mus_musculus_76_38   (House mouse)   2
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   1
Bos_taurus_76_3.1   (Cattle)   2
Mustela_putorius_furo_76_1.0   (Domestic ferret)   2
Loxodonta_africana_76_3   (African savanna elephant)   1
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   1
Gallus_gallus_76_4   (Chicken)   1
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   1
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   1
Anolis_carolinensis_76_2.0   (Green anole)   2
Latimeria_chalumnae_76_1   (Coelacanth)   1
Lepisosteus_oculatus_76   (Spotted gar)   2
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   1
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   2
Poecilia_formosa_76   (Amazon molly)   1
Oreochromis_niloticus_76_1.0   (Nile tilapia)   3
Astyanax_mexicanus_76   (Mexican tetra)   2
Danio_rerio_76_9   (Zebrafish)   3
Adineta_vaga 2
Crassostrea_gigas_22   (Pacific oyster)   1
Helobdella_robusta_ 1
Capitella_sp._I_ 1
Caenorhabditis_japonica_ 1
Caenorhabditis_brenneri_ 1
Caenorhabditis_remanei_ 1
Caenorhabditis_elegans_76_235   (Roundworm)   2
Caenorhabditis_briggsae_2 1
Amphimedon_queenslandica 1
Trichoplax_adhaerens_ 1
Proterospongia_sp._ATCC_50818_ 1
Mortierella_verticillata_NRRL_6337_ 1
Daldinia_eschscholzii_EC12_v1.0 1
Sporotrichum_thermophile_ATCC_42464_ 1
Cryphonectria_parasitica_   (Chestnut blight fungus)   1
Acremonium_alcalophilumv_1.0 1
Glomerella_graminicola_22 1
Nectria_haematococca_mpVI_ 1
Fusarium_oxysporum_f._sp._lycopersici_4286_ 1
Fusarium_verticillioides_7600_ 1
Trichoderma_reesei_1.2 1
Botrytis_cinerea_B05.10_ 1
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   1
Stagonospora_nodorum_ 1
Aspergillus_acidus_v1.0 1
Aspergillus_nidulans_FGSC_A4_ 1
Aspergillus_sydowii_v1.0 1
Aspergillus_versicolor_v1.0 1
Aspergillus_tubingensis_v1.0 1
Tuber_melanosporum_Mel28_22 1
Tuber_melanosporum_Vittad_   (Perigord truffle)   1
Spizellomyces_punctatus_DAOM_BR117_ 1

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   2
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   2

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   1
Pan_troglodytes_69_2.1.4   (Chimpanzee)   1
Pongo_abelii_69_2   (Sumatran orangutan)   1
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   1
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   1
Otolemur_garnettii_69_3   (Small-eared galago)   1
Mus_musculus_69_38   (House mouse)   2
Oryctolagus_cuniculus_69_2   (Rabbit)   1
Bos_taurus_69_3.1   (Cattle)   2
Mustela_putorius_furo_69_1.0   (Domestic ferret)   2
Loxodonta_africana_69_3   (African savanna elephant)   1
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   1
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   1
Latimeria_chalumnae_69_1   (Coelacanth)   1
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   1
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   2
Oreochromis_niloticus_69_1.0   (Nile tilapia)   1
Danio_rerio_69_9   (Zebrafish)   3
Caenorhabditis_elegans_69_215   (Roundworm)   1

Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   1
Homo_sapiens__(NCBI_version)   (Human)   2
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   2
TargetDB__(Targets) 2
STRING_v9.0.5_(STRING) 14
Uniprot_2018_03_genome 6400
NCBI_2017_08_genome 519

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