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Domain combinations for _gap_,50729,50729,_gap_,54236,47031,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

50729 - PH domain-like
50729 - PH domain-like
54236 - Ubiquitin-like
47031 - Second domain of FERM

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Mus_musculus_76_38   (House mouse)   1
Mustela_putorius_furo_76_1.0   (Domestic ferret)   1
Loxodonta_africana_76_3   (African savanna elephant)   3
Macropus_eugenii_76_1.0   (Tammar wallaby)   1
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   1
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   1
Meleagris_gallopavo_76_2   (Turkey)   1
Gallus_gallus_76_4   (Chicken)   1
Anas_platyrhynchos_76_1.0   (Mallard)   1
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   1
Ficedula_albicollis_76_1.0   (Collared flycatcher)   2
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   3
Anolis_carolinensis_76_2.0   (Green anole)   2
Latimeria_chalumnae_76_1   (Coelacanth)   2
Lepisosteus_oculatus_76   (Spotted gar)   2
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   1
Takifugu_rubripes_76_4   (Torafugu)   3
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   1
Oryzias_latipes_76_1   (Japanese medaka)   1
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   1
Poecilia_formosa_76   (Amazon molly)   1
Oreochromis_niloticus_76_1.0   (Nile tilapia)   1
Astyanax_mexicanus_76   (Mexican tetra)   1
Danio_rerio_76_9   (Zebrafish)   1
Ciona_intestinalis_76   (Vase tunicate)   1
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   1
Crassostrea_gigas_22   (Pacific oyster)   1
Danaus_plexippus_OGS1.0   (Monarch butterfly)   1
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   2
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   1
Solenopsis_invicta_v.2.2.3   (Red fire ant)   1
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   1
Atta_cephalotes_v1.1 1
Drosophila_grimshawi_1.3 0
Drosophila_willistoni_1.3 1
Drosophila_pseudoobscura_2.13 1
Drosophila_suzukii 1
Drosophila_yakuba_1.3 1
Drosophila_melanogaster_76_5   (Fruit fly)   9
Drosophila_erecta_1.3 1
Drosophila_ananassae_1.3 1
Drosophila_virilis_1.2 0
Drosophila_mojavensis_1.3 0
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   1
Anopheles_darlingi_22   (American malaria mosquito)   1
Anopheles_gambiae_49_3j   (African malaria mosquito)   1
Acyrthosiphon_pisum_   (Pea aphid)   1

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Strains
Genome     Number
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   2
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   2

Longest transcript per gene
Genome     Number
Mus_musculus_69_38   (House mouse)   1
Mustela_putorius_furo_69_1.0   (Domestic ferret)   1
Loxodonta_africana_69_3   (African savanna elephant)   1
Macropus_eugenii_69_1.0   (Tammar wallaby)   1
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   1
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   1
Meleagris_gallopavo_69_2   (Turkey)   1
Gallus_gallus_69_2   (Chicken)   1
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   1
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   2
Anolis_carolinensis_69_2.0   (Green anole)   1
Latimeria_chalumnae_69_1   (Coelacanth)   2
Takifugu_rubripes_69_4   (Torafugu)   1
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   1
Oryzias_latipes_69_1   (Japanese medaka)   1
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   1
Oreochromis_niloticus_69_1.0   (Nile tilapia)   1
Danio_rerio_69_9   (Zebrafish)   1
Ciona_intestinalis_69   (Vase tunicate)   1
Drosophila_melanogaster_69_5   (Fruit fly)   1

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Others
Genome     Number
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   1
STRING_v9.0.5_(STRING) 17
Uniprot_2018_03_genome 4925
NCBI_2017_08_genome 566

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