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Home > SCOP hierarchy > Domain combination - _gap_,50729,54236,48350,_gap_

Domain combinations for _gap_,50729,54236,48350,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

50729 - PH domain-like
54236 - Ubiquitin-like
48350 - GTPase activation domain, GAP

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome Number

Homo_sapiens_76_38 (Human) 1

Pan_troglodytes_76_2.1.4 (Chimpanzee) 1

Pongo_abelii_76_2 (Sumatran orangutan) 1

Nomascus_leucogenys_76_1.0 (Northern white-cheeked gibbon) 1

Papio_anubis_76 (Olive baboon) 1

Macaca_mulatta_76_1 (Rhesus monkey) 1

Callithrix_jacchus_76_3.2.1 (White-tufted-ear marmoset) 1

Otolemur_garnettii_76_3 (Small-eared galago) 1

Rattus_norvegicus_76_5.0 (Norway rat) 1

Mus_musculus_76_38 (House mouse) 1

Heterocephalus_glaber_v1.7-2 (Naked mole-rat) 1

Oryctolagus_cuniculus_76_2 (Rabbit) 1

Vicugna_pacos_76_1 (Alpaca) 1

Tursiops_truncatus_76_1 (Bottlenose dolphin) 1

Mustela_putorius_furo_76_1.0 (Domestic ferret) 1

Equus_caballus_76_2 (Horse) 1

Pteropus_vampyrus_76_1 (Large flying fox) 1

Procavia_capensis_76_1 (Cape rock hyrax) 1

Choloepus_hoffmanni_76_1 (Hoffmann's two-fingered sloth) 1

Macropus_eugenii_76_1.0 (Tammar wallaby) 1

Monodelphis_domestica_76_5 (Gray short-tailed opossum) 1

Gallus_gallus_76_4 (Chicken) 1

Ficedula_albicollis_76_1.0 (Collared flycatcher) 1

Pelodiscus_sinensis_76_1.0 (Chinese soft-shelled turtle) 2

Anolis_carolinensis_76_2.0 (Green anole) 1

Xenopus_tropicalis_76_4.2 (Tropical clawed frog) 2

Lepisosteus_oculatus_76 (Spotted gar) 1

Poecilia_formosa_76 (Amazon molly) 1

Oreochromis_niloticus_76_1.0 (Nile tilapia) 2

Danio_rerio_76_9 (Zebrafish) 1

Acyrthosiphon_pisum_ (Pea aphid) 1

Nematostella_vectensis_1.0 (Starlet sea anemone) 0

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Strains
Genome Number

Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2) (Tropical clawed frog) 2

Longest transcript per gene
Genome Number

Homo_sapiens_69_37 (Human) 1

Pan_troglodytes_69_2.1.4 (Chimpanzee) 1

Pongo_abelii_69_2 (Sumatran orangutan) 1

Nomascus_leucogenys_69_1.0 (Northern white-cheeked gibbon) 1

Macaca_mulatta_69_1 (Rhesus monkey) 1

Callithrix_jacchus_69_3.2.1 (White-tufted-ear marmoset) 1

Otolemur_garnettii_69_3 (Small-eared galago) 1

Rattus_norvegicus_69_3.4 (Norway rat) 1

Mus_musculus_69_38 (House mouse) 1

Vicugna_pacos_69_1 (Alpaca) 1

Tursiops_truncatus_69_1 (Bottlenose dolphin) 1

Mustela_putorius_furo_69_1.0 (Domestic ferret) 1

Equus_caballus_69_2 (Horse) 1

Pteropus_vampyrus_69_1 (Large flying fox) 1

Procavia_capensis_69_1 (Cape rock hyrax) 1

Choloepus_hoffmanni_69_1 (Hoffmann's two-fingered sloth) 1

Macropus_eugenii_69_1.0 (Tammar wallaby) 1

Monodelphis_domestica_69_5 (Gray short-tailed opossum) 1

Pelodiscus_sinensis_69_1.0 (Chinese soft-shelled turtle) 2

Oreochromis_niloticus_69_1.0 (Nile tilapia) 2

Danio_rerio_69_9 (Zebrafish) 1

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Others
Genome Number

Homo_sapiens_75_37_(old_version_GRC) (Human) 1

Homo_sapiens__(NCBI_version) (Human) 1

Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate) (House mouse) 1

NCBI_2017_08_genome 238

TargetDB__(Targets) 1

STRING_v9.0.5_(STRING) 8

Uniprot_2018_03_genome 1176

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Domain combinations for _gap_,50729,54236,48350,_gap_ superfamilies in groups of genomes