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Domain combinations for _gap_,50729,56024,_gap_,56024,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

50729 - PH domain-like
56024 - Phospholipase D/nuclease
56024 - Phospholipase D/nuclease

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Latimeria_chalumnae_76_1   (Coelacanth)   1
Oikopleura_dioica 1
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   0
Adineta_vaga 1
Drosophila_grimshawi_1.3 0
Drosophila_suzukii 0
Drosophila_yakuba_1.3 0
Drosophila_simulans_1.3 0
Drosophila_melanogaster_76_5   (Fruit fly)   0
Drosophila_erecta_1.3 0
Drosophila_ananassae_1.3 0
Drosophila_virilis_1.2 0
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   0
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   0
Anopheles_darlingi_22   (American malaria mosquito)   0
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   1
Mortierella_verticillata_NRRL_6337_ 1
Spizellomyces_punctatus_DAOM_BR117_ 1
Selaginella_moellendorffii_ 2
Eucalyptus_grandis_v201   (Rose gum)   1
Theobroma_cacao_B97-61/B2_v1   (Cacao)   2
Gossypium_raimondii_v221 9
Citrus_clementina_v165 3
Citrus_sinensis_v154   (Sweet orange)   2
Thellungiella_halophila_v173 2
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   2
Capsella_rubella_v183 2
Arabidopsis_lyrata_   (Lyrate rockcress)   2
Arabidopsis_thaliana_10   (Thale cress)   2
Carica_papaya_   (Papaya)   1
Medicago_truncatula_   (Barrel medic)   3
Phaseolus_vulgaris_v186   (French bean)   2
Glycine_max_v109   (Soybean)   3
Cucumis_sativus_v122   (Cucumber)   1
Fragaria_vesca_   (Wild strawberry)   2
Malus_domestica_v196   (Apple)   2
Prunus_persica_v139   (Peach)   2
Linum_usitatissimum_v200   (Flax)   3
Manihot_esculenta_v147   (Cassava)   3
Populus_trichocarpa_v156   (Black cottonwood)   3
Vitis_vinifera_   (Wine grape)   1
Mimulus_guttatus_v140   (Spotted monkey flower)   2
Solanum_lycopersicum_v.2.3   (Tomato)   2
Actinidia_chinensis_Hongyang_ 1
Aquilegia_coerulea_v195 3
Triticum_urartu_22 1
Triticum_aestivum_22   (Bread wheat)   3
Brachypodium_distachyon_   (Stiff brome)   2
Oryza_meridionalis_22 4
Oryza_glumaepatula_22 2
Oryza_glaberrima   (African rice)   1
Oryza_punctata_22 4
Oryza_nivara_22 4
Oryza_brachyantha_22   (Malo sina)   2
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   2
Oryza_sativa_v193   (Rice)   2
Panicum_virgatum_v202   (Switchgrass)   2
Setaria_italica_v164   (Foxtail millet)   2
Zea_mays_subsp._mays_   (Maize)   1
Zea_mays_v181   (Maize)   1
Sorghum_bicolor_   (Sorghum)   1
Amborella_trichopoda_22 1
Physcomitrella_patens 2
Pythium_iwayamai_DAOM_BR242034_22 1
Pythium_ultimum_v1.7-2 1
Pythium_vexans_DAOM_BR484_22 1
Paramecium_tetraurelia_ 1
Ichthyophthirius_multifiliis_strain_G5_ 1

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Strains
Genome     Number
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   0
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   2
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   2

Longest transcript per gene
Genome     Number
Felis_catus_69   (Domestic cat)   1
Latimeria_chalumnae_69_1   (Coelacanth)   1
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   0
Drosophila_melanogaster_69_5   (Fruit fly)   0
Arabidopsis_thaliana_10   (Thale cress)   2

Others
Genome     Number
Loa_loa_v3.3_(Request)   (Eye worm)   1
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   1
Malus_x_domestica_(Duplicate)   (Apple)   2
Ricinus_communis__(Early_assembly)   (Castor bean)   2
Nicotiana_benthamiana_0.4.4_(Early_draft) 1
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   1
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   2
TargetDB__(Targets) 2
STRING_v9.0.5_(STRING) 17
NCBI_2017_08_genome 268
Uniprot_2018_03_genome 4505

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