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  Home > SCOP hierarchy > Domain combination - _gap_,50729,_gap_

Domain combinations for _gap_,50729,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

50729 - PH domain-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   56
Pan_troglodytes_76_2.1.4   (Chimpanzee)   19
Gorilla_gorilla_76_3.1   (Western gorilla)   25
Pongo_abelii_76_2   (Sumatran orangutan)   12
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   15
Papio_anubis_76   (Olive baboon)   22
Macaca_mulatta_76_1   (Rhesus monkey)   40
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   49
Otolemur_garnettii_76_3   (Small-eared galago)   18
Microcebus_murinus_76_1   (Gray mouse lemur)   18
Rattus_norvegicus_76_5.0   (Norway rat)   32
Mus_musculus_76_38   (House mouse)   53
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   21
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   32
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   22
Cavia_porcellus_76_3   (Domestic guinea pig)   17
Oryctolagus_cuniculus_76_2   (Rabbit)   20
Ochotona_princeps_76   (American pika)   12
Tupaia_belangeri_76   (Northern tree shrew)   16
Sus_scrofa_76_10.2   (Pig)   30
Bos_taurus_76_3.1   (Cattle)   21
Ovis_aries_76_3.1   (Sheep)   21
Vicugna_pacos_76_1   (Alpaca)   13
Tursiops_truncatus_76_1   (Bottlenose dolphin)   17
Mustela_putorius_furo_76_1.0   (Domestic ferret)   18
Ailuropoda_melanoleuca_76_1   (Giant panda)   22
Canis_familiaris_76_3.1   (Dog)   31
Felis_catus_76_6.2   (Domestic cat)   16
Equus_caballus_76_2   (Horse)   26
Myotis_lucifugus_76_2.0   (Little brown bat)   17
Pteropus_vampyrus_76_1   (Large flying fox)   24
Sorex_araneus_76_1   (European shrew)   12
Erinaceus_europaeus_76   (Western European hedgehog)   17
Procavia_capensis_76_1   (Cape rock hyrax)   25
Loxodonta_africana_76_3   (African savanna elephant)   26
Echinops_telfairi_76   (Small Madagascar hedgehog)   21
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   25
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   11
Macropus_eugenii_76_1.0   (Tammar wallaby)   22
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   19
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   19
Ornithorhynchus_anatinus_76_5   (Platypus)   19
Saccoglossus_kowalevskii_v3.0 23
Petromyzon_marinus_76_7.0   (Sea lamprey)   10
Meleagris_gallopavo_76_2   (Turkey)   21
Gallus_gallus_76_4   (Chicken)   16
Anas_platyrhynchos_76_1.0   (Mallard)   15
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   11
Ficedula_albicollis_76_1.0   (Collared flycatcher)   14
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   22
Anolis_carolinensis_76_2.0   (Green anole)   12
Xenopus_laevis_   (African clawed frog)   19
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   20
Latimeria_chalumnae_76_1   (Coelacanth)   22
Lepisosteus_oculatus_76   (Spotted gar)   20
Gadus_morhua_76_1   (Atlantic cod)   18
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   27
Takifugu_rubripes_76_4   (Torafugu)   64
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   28
Oryzias_latipes_76_1   (Japanese medaka)   23
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   19
Poecilia_formosa_76   (Amazon molly)   24
Oreochromis_niloticus_76_1.0   (Nile tilapia)   24
Astyanax_mexicanus_76   (Mexican tetra)   25
Danio_rerio_76_9   (Zebrafish)   43
Oikopleura_dioica 11
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   9
Ciona_intestinalis_76   (Vase tunicate)   8
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   19
Adineta_vaga 23
Octopus_bimaculoides_280 9
Crassostrea_gigas_22   (Pacific oyster)   14
Lottia_gigantea_   (Owl limpet)   2
Helobdella_robusta_ 11
Capitella_sp._I_ 5
Danaus_plexippus_OGS1.0   (Monarch butterfly)   11
Heliconius_melpomene_   (Postman butterfly)   9
Bombyx_mori_   (Domestic silkworm)   11
Nasonia_vitripennis_   (Jewel wasp)   8
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   6
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   7
Linepithema_humile_v1.1   (Argentine ant)   11
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   7
Solenopsis_invicta_v.2.2.3   (Red fire ant)   7
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   12
Atta_cephalotes_v1.1 11
Camponotus_floridanus_v3.3   (Florida carpenter ant)   9
Lucilia_cuprina   (Australian sheep blowfly)   11
Drosophila_grimshawi_1.3 11
Drosophila_willistoni_1.3 10
Drosophila_pseudoobscura_2.13 10
Drosophila_persimilis_1.3 12
Drosophila_suzukii 11
Drosophila_yakuba_1.3 9
Drosophila_simulans_1.3 7
Drosophila_sechellia_1.3 10
Drosophila_melanogaster_76_5   (Fruit fly)   38
Drosophila_erecta_1.3 10
Drosophila_ananassae_1.3 9
Drosophila_virilis_1.2 9
Drosophila_mojavensis_1.3 10
Megaselia_scalaris_22 5
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   11
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   19
Anopheles_darlingi_22   (American malaria mosquito)   7
Anopheles_gambiae_49_3j   (African malaria mosquito)   9
Tribolium_castaneum_3.0   (Red flour beetle)   10
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   5
Acyrthosiphon_pisum_   (Pea aphid)   6
Rhodnius_prolixus_22 5
Daphnia_pulex_   (Common water flea)   10
Strigamia_maritima_22 6
Sarcoptes_scabiei 4
Tetranychus_urticae_   (Two-spotted spider mite)   8
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   5
Pristionchus_pacificus_ 5
Meloidogyne_incognita_   (Southern root-knot nematode)   4
Meloidogyne_hapla_ 2
Onchocerca_volvulus_22 10
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   9
Caenorhabditis_japonica_ 7
Caenorhabditis_brenneri_ 11
Caenorhabditis_remanei_ 5
Caenorhabditis_elegans_76_235   (Roundworm)   11
Caenorhabditis_briggsae_2 4
Trichinella_spiralis_22 8
Hymenolepis_microstoma_ 9
Echinococcus_multilocularis_ 11
Echinococcus_granulosus_ 11
Taenia_solium_   (Pork tapeworm)   11
Schistosoma_mansoni_ 8
Mnemiopsis_leidyi   (Sea walnut)   7
Thelohanellus_kitauei 5
Acropora_digitifera_v1.0 14
Nematostella_vectensis_1.0   (Starlet sea anemone)   7
Hydra_vulgaris 10
Amphimedon_queenslandica 16
Trichoplax_adhaerens_ 7
Proterospongia_sp._ATCC_50818_ 12
Monosiga_brevicollis_ 13
Sphaeroforma_arctica_JP610_ 5
Capsaspora_owczarzaki_ATCC_30864_ 10
Conidiobolus_coronatus_NRRL28638_v1.0 12
Mortierella_verticillata_NRRL_6337_ 16
Phycomyces_blakesleeanus_ 25
Rhizopus_oryzae_RA_99-880_ 16
Mucor_circinelloides_ 17
Rhizomucor_miehei_CAU432_ 13
Malassezia_globosa_CBS_7966_ 4
Sporisorium_reilianum_22 5
Ustilago_maydis_ 5
Mixia_osmundae_IAM_14324_v1.0 5
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 7
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 7
Melampsora_laricis-populina_ 6
Rhodotorula_graminis_WP1_v1.0 6
Sporobolomyces_roseus_IAM_13481_ 5
Microbotryum_violaceum_22 7
Wallemia_sebi_v1.0 8
Sphaerobolus_stellatus_v1.0 7
Piloderma_croceum_F_1598_v1.0 7
Serpula_lacrymans_var._lacrymans_S7.9_ 2
Coniophora_puteana 5
Hydnomerulius_pinastri_v2.0 7
Paxillus_rubicundulus_Ve08.2h10_v1.0 6
Pisolithus_microcarpus_441_v1.0 7
Pisolithus_tinctorius_Marx_270_v1.0 7
Scleroderma_citrinum_Foug_A_v1.0 5
Coprinopsis_cinerea_okayama7_130_v3 8
Pleurotus_ostreatus_   (Oyster mushroom)   6
Amanita_thiersii_Skay4041_v1.0 6
Amanita_muscaria_Koide_v1.0   (Fly agaric)   4
Galerina_marginata_v1.0 8
Hebeloma_cylindrosporum_h7_v2.0 9
Laccaria_bicolor_S238N-H82_ 8
Agaricus_bisporus_var._bisporus_ 5
Schizophyllum_commune_ 5
Stereum_hirsutum_FP-91666_SS1__v1.0 5
Heterobasidion_annosum_ 11
Gloeophyllum_trabeumv1.0 5
Punctularia_strigosozonata_v1.0 5
Sebacina_vermifera_MAFF_305830_v1.0 6
Fomitiporia_mediterranea_v1.0 4
Tulasnella_calospora_AL13/4D_v1.0 4
Postia_placenta_ 8
Wolfiporia_cocos_MD-104_SS10__v1.0 7
Fomitopsis_pinicolav1.0 7
Fomitopsis_pinicola_FP-58527_SS1_v3.0 6
Phanerochaete_chrysosporium_RP-78_2.1 6
Dichomitus_squalens 5
Trametes_versicolor_v1.0 3
Tremella_mesenterica_   (Witches' butter)   7
Daldinia_eschscholzii_EC12_v1.0 7
Apiospora_montagnei_NRRL_25634_v1.0 8
Magnaporthe_poae_ATCC_64411_22 4
Magnaporthe_grisea_70-15_ 6
Podospora_anserina_ 8
Sporotrichum_thermophile_ATCC_42464_ 8
Thielavia_terrestris_NRRL_8126_ 6
Chaetomium_globosum_CBS_148.51_ 8
Neurospora_tetrasperma_ 10
Neurospora_discreta_FGSC_8579_ 9
Neurospora_crassa_OR74A_ 9
Cryphonectria_parasitica_   (Chestnut blight fungus)   6
Verticillium_albo-atrum_VaMs.102_ 7
Verticillium_dahliae_VdLs.17_ 8
Acremonium_alcalophilumv_1.0 10
Glomerella_graminicola_22 11
Fusarium_graminearum_ 7
Nectria_haematococca_mpVI_ 8
Fusarium_oxysporum_f._sp._lycopersici_4286_ 11
Fusarium_verticillioides_7600_ 7
Trichoderma_asperellum_CBS_433.97_v1.0 9
Trichoderma_atroviride_ 9
Trichoderma_citrinoviride_v1.0 8
Trichoderma_reesei_1.2 8
Trichoderma_virens_Gv29-8_ 8
Trichoderma_longibrachiatum_ATCC_18648_v1.0 8
Trichoderma_harzianum_CBS_226.95_v1.0 8
Amorphotheca_resinae_v1.0   (Creosote fungus)   8
Botrytis_cinerea_B05.10_ 6
Sclerotinia_sclerotiorum_ 8
Blumeria_graminis_22 7
Didymella_exigua_CBS_183.55_v1.0 8
Leptosphaeria_maculans_22 10
Setosphaeria_turcica_v1.0 10
Cochliobolus_miyabeanus_ATCC_44560_v1.0 8
Cochliobolus_victoriae_FI3_v1.0 6
Cochliobolus_carbonum_26-R-13_v1.0 8
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   9
Alternaria_brassicicola_ 8
Cochliobolus_lunatus_m118_v2.0 8
Pyrenophora_teres_f._teres_22 8
Pyrenophora_tritici-repentis_ 8
Stagonospora_nodorum_ 11
Mycosphaerella_graminicola_IPO323_ 5
Zasmidium_cellare_ATCC_36951_v1.0 10
Dothistroma_septosporum 9
Septoria_musiva_v1.0 8
Mycosphaerella_fijiensis_CIRAD86_ 7
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 8
Paracoccidioides_brasiliensis_Pb18_ 9
Coccidioides_posadasii_RMSCC_3488_ 10
Coccidioides_immitis_RS_ 9
Ajellomyces_dermatitidis_SLH14081_ 11
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 11
Microsporum_canis_CBS_113480_ 7
Trichophyton_equinum_CBS_127.97_ 9
Trichophyton_verrucosum_HKI_0517_ 11
Arthroderma_benhamiae_CBS_112371_ 10
Trichophyton_tonsurans_CBS_112818_ 7
Trichophyton_rubrum_CBS_118892_ 9
Uncinocarpus_reesii_1704_ 8
Aspergillus_zonatus_v1.0 9
Penicillium_chrysogenum_Wisconsin_54-1255_ 8
Penicillium_chrysogenum_v1.0 9
Aspergillus_acidus_v1.0 10
Aspergillus_fumigatus_Af293 9
Aspergillus_brasiliensis_v1.0 11
Aspergillus_nidulans_FGSC_A4_ 9
Aspergillus_sydowii_v1.0 8
Aspergillus_versicolor_v1.0 10
Aspergillus_glaucus 8
Aspergillus_carbonarius_ITEM_5010_ 9
Neosartorya_fischeri_NRRL_181_ 9
Aspergillus_terreus_NIH2624_ 9
Aspergillus_tubingensis_v1.0 10
Aspergillus_wentii_v1.0 10
Aspergillus_oryzae_RIB40_ 6
Aspergillus_niger_22 10
Aspergillus_niger_ATCC_1015_ 8
Aspergillus_flavus_NRRL3357_ 9
Aspergillus_clavatus_NRRL_1_ 10
Penicillium_marneffei_ATCC_18224_ 10
Tuber_melanosporum_Mel28_22 13
Tuber_melanosporum_Vittad_   (Perigord truffle)   13
Hansenula_polymorpha_v2.0 8
Dekkera_bruxellensis_CBS_2499_v2.0 4
Pichia_membranifaciensv1.0 8
Candida_tanzawaensis_NRRL_Y-17324__v1.0 8
Candida_dubliniensis_CD36_ 6
Candida_tropicalis_MYA-3404_ 8
Candida_parapsilosis_ 8
Candida_albicans_SC5314 7
Lodderomyces_elongisporus_NRRL_YB-4239_ 9
Babjeviella_inositovora_NRRL_Y-12698_v1.0 7
Pichia_stipitis_CBS_6054_ 8
Candida_guilliermondii_ATCC_6260_ 8
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 8
Debaromyces_hansenii 8
Wickerhamomyces_anomalus 6
Pichia_pastoris_GS115_ 8
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 4
Yarrowia_lipolytica_CLIB122 8
Candida_lusitaniae_ATCC_42720_ 9
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 10
Vanderwaltozyma_polyspora_DSM_70294_ 6
Candida_glabrata_CBS138 6
Kluyveromyces_thermotolerans_CBS_6340 6
Lachancea_kluyveri_ 6
Kluyveromyces_waltii 6
Ashbya_gossypii_ATCC_10895_ 5
Zygosaccharomyces_rouxii_ 6
Saccharomyces_mikatae_MIT 6
Saccharomyces_paradoxus_MIT 6
Saccharomyces_cerevisiae_76   (Baker's yeast)   7
Saccharomyces_bayanus_MIT 6
Kluyveromyces_lactis 7
Schizosaccharomyces_cryophilus_OY26_22 3
Schizosaccharomyces_octosporus_yFS286_ 3
Schizosaccharomyces_japonicus_yFS275_ 2
Schizosaccharomyces_pombe   (Fission yeast)   3
Catenaria_anguillulae_PL171_v1.0 12
Allomyces_macrogynus_ATCC_38327_ 16
Spizellomyces_punctatus_DAOM_BR117_ 14
Dictyostelium_discoideum 12
Dictyostelium_purpureum_ 10
Entamoeba_dispar_1.2 6
Entamoeba_invadens_1.2 3
Entamoeba_histolytica_1 6
Selaginella_moellendorffii_ 3
Pinus_taeda   (Loblolly pine)   0
Picea_abies   (Norway spruce)   1
Eucalyptus_grandis_v201   (Rose gum)   1
Theobroma_cacao_B97-61/B2_v1   (Cacao)   2
Gossypium_raimondii_v221 18
Citrus_clementina_v165 2
Citrus_sinensis_v154   (Sweet orange)   2
Thellungiella_halophila_v173 5
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   6
Capsella_rubella_v183 7
Arabidopsis_lyrata_   (Lyrate rockcress)   4
Arabidopsis_thaliana_10   (Thale cress)   6
Carica_papaya_   (Papaya)   2
Medicago_truncatula_   (Barrel medic)   2
Phaseolus_vulgaris_v186   (French bean)   2
Glycine_max_v109   (Soybean)   1
Cucumis_sativus_v122   (Cucumber)   4
Fragaria_vesca_   (Wild strawberry)   4
Malus_domestica_v196   (Apple)   6
Prunus_persica_v139   (Peach)   4
Linum_usitatissimum_v200   (Flax)   5
Manihot_esculenta_v147   (Cassava)   5
Populus_trichocarpa_v156   (Black cottonwood)   3
Vitis_vinifera_   (Wine grape)   2
Mimulus_guttatus_v140   (Spotted monkey flower)   2
Solanum_lycopersicum_v.2.3   (Tomato)   0
Solanum_tuberosum_   (Potato)   1
Actinidia_chinensis_Hongyang_ 1
Aquilegia_coerulea_v195 5
Triticum_urartu_22 2
Triticum_aestivum_22   (Bread wheat)   5
Aegilops_tauschii_22 5
Brachypodium_distachyon_   (Stiff brome)   2
Oryza_barthii_22   (African wild rice)   0
Oryza_meridionalis_22 0
Oryza_glumaepatula_22 0
Oryza_glaberrima   (African rice)   0
Oryza_punctata_22 2
Oryza_nivara_22 1
Oryza_brachyantha_22   (Malo sina)   1
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   0
Oryza_sativa_v193   (Rice)   0
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   3
Panicum_virgatum_v202   (Switchgrass)   6
Setaria_italica_v164   (Foxtail millet)   6
Zea_mays_subsp._mays_   (Maize)   6
Zea_mays_v181   (Maize)   8
Sorghum_bicolor_   (Sorghum)   4
Musa_balbisiana   (Balbis banana)   5
Musa_acuminata_22   (Wild Malaysian banana)   2
Amborella_trichopoda_22 1
Physcomitrella_patens 7
Coccomyxa_subellipsoidea_sp._C-169_v2 3
Asterochloris_sp._Cgr/DA1pho_v1.0 2
Chlorella_variabilis_sp._NC64A_ 4
Chlorella_vulgaris_ 3
Volvox_carteri_f._nagariensis_ 2
Volvox_carteri_v199 2
Chlamydomonas_reinhardtii_4.0 3
Ostreococcus_sp._RCC809_ 1
Ostreococcus_lucimarinus_CCE9901_ 1
Ostreococcus_tauri_ 2
Bathycoccus_prasinos_ 3
Micromonas_sp._RCC299_ 4
Micromonas_pusilla_CCMP1545_v3.0 1
Cyanidioschyzon_merolae_strain_10D_22 1
Cyanidioschyzon_merolae 1
Porphyridium_purpureum_02_2012 3
Thecamonas_trahens_ATCC_50062_ 27
Bigelowiella_natans_CCMP2755_22 26
Cyanophora_paradoxa_ 2
Leishmania_mexicana_2.4 4
Leishmania_major_strain_Friedlin_ 4
Leishmania_infantum_JPCM5_2.4 4
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 4
Trypanosoma_vivax_ 1
Trypanosoma_cruzi_strain_CL_Brener 6
Trypanosoma_congolense_2.4 2
Trypanosoma_brucei_gambiense_v4.1 1
Trypanosoma_brucei_TREU927_v4.1 1
Ectocarpus_siliculosus 10
Aureococcus_anophagefferens_ 6
Albugo_laibachii_22 23
Pythium_iwayamai_DAOM_BR242034_22 18
Pythium_arrhenomanes_ATCC_12531_22 16
Pythium_ultimum_v1.7-2 18
Pythium_aphanidermatum_DAOM_BR444_22 20
Pythium_irregulare_DAOM_BR486_22 24
Pythium_vexans_DAOM_BR484_22 14
Phytophthora_ramorum_1.1   (Sudden oak death agent)   21
Phytophthora_sojae_1.1 19
Phytophthora_infestans_T30-4_ 16
Phytophthora_capsici_ 14
Hyaloperonospora_arabidopsidis_22 15
Phaeodactylum_tricornutumCCAP_1055/1 9
Fragilariopsis_cylindrus 23
Thalassiosira_pseudonana_CCMP1335 11
Perkinsus_marinus_ATCC_50983_ 3
Paramecium_tetraurelia_ 14
Tetrahymena_thermophila_SB210_1_ 12
Ichthyophthirius_multifiliis_strain_G5_ 2
Cryptosporidium_hominis 3
Cryptosporidium_muris 5
Cryptosporidium_parvum_Iowa_II 5
Neospora_caninum 5
Toxoplasma_gondii_VEG 8
Toxoplasma_gondii_ME49 7
Toxoplasma_gondii_GT1 7
Babesia_bovis_T2Bo_ 4
Theileria_parva__ 1
Theileria_annulata 2
Plasmodium_falciparum_3D7_ 4
Plasmodium_vivax_SaI-1_7.0 4
Plasmodium_knowlesi_strain_H_ 4
Plasmodium_yoelii_ssp._yoelii_1_ 3
Plasmodium_chabaudi_ 4
Plasmodium_berghei_ANKA_ 3
Symbiodinium_minutum_clade_B1_v1.2 17
Naegleria_gruberi_ 7
Trichomonas_vaginalis_ 1
Guillardia_theta_CCMP2712_v1.0_ 16
Emiliania_huxleyi_CCMP1516_ 11

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   35
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   21
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   13
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   10
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   10
Cryptococcus_neoformans_var._grubii_H99_ 8
Cryptococcus_neoformans_B-3501A_ 9
Cryptococcus_neoformans_JEC21_ 5
Paracoccidioides_brasiliensis_Pb01_ 11
Paracoccidioides_brasiliensis_Pb03_ 11
Coccidioides_posadasii_str._Silveira_ 8
Coccidioides_immitis_RMSCC_3703_ 5
Coccidioides_immitis_RMSCC_2394_ 9
Coccidioides_immitis_H538.4_ 10
Ajellomyces_dermatitidis_ER-3_ 10
Histoplasma_capsulatum_H143 9
Histoplasma_capsulatum_H88 11
Histoplasma_capsulatum_G186AR 11
Aspergillus_fumigatus_A1163_ 9
Candida_albicans_WO-1_ 7
Saccharomyces_cerevisiae_UC5 3
Saccharomyces_cerevisiae_PW5 6
Saccharomyces_cerevisiae_FL100 1
Saccharomyces_cerevisiae_CLIB382 1
Saccharomyces_cerevisiae_CLIB324 2
Saccharomyces_cerevisiae_CBS7960 5
Saccharomyces_cerevisiae_YJM269 5
Saccharomyces_cerevisiae_T7 6
Saccharomyces_cerevisiae_FostersB 4
Saccharomyces_cerevisiae_FostersO 4
Saccharomyces_cerevisiae_VL3 9
Saccharomyces_cerevisiae_Vin13 7
Saccharomyces_cerevisiae_LalvinQA23 4
Saccharomyces_cerevisiae_AWRI796 4
Saccharomyces_cerevisiae_Sigma1278b 5
Saccharomyces_cerevisiae_W303 6
Saccharomyces_cerevisiae_JAY291 6
Saccharomyces_cerevisiae_AWRI1631 4
Saccharomyces_cerevisiae_M22 2
Saccharomyces_cerevisiae_T73 1
Saccharomyces_cerevisiae_CLIB215 6
Saccharomyces_cerevisiae_Y10 1
Saccharomyces_cerevisiae_YJM789_ 7
Saccharomyces_cerevisiae_YJM789 6
Saccharomyces_cerevisiae_RM11-1a 6
Saccharomyces_cerevisiae_RM11-1a_ 6
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   7
Schizosaccharomyces_pombe_972h-_ 3
Batrachochytrium_dendrobatidis_JEL423_ 9
Batrachochytrium_dendrobatidis_JAM81_ 6
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   1
Hordeum_vulgare_22   (Domesticated barley)   6
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   1
Trypanosoma_brucei_Lister_427_v4.1 1
Neospora_caninum_Nc-Liverpool_6.2 5
Plasmodium_falciparum_HB3_ 4
Plasmodium_falciparum_Dd2_ 2

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   14
Pan_troglodytes_69_2.1.4   (Chimpanzee)   17
Gorilla_gorilla_69_3.1   (Western gorilla)   17
Pongo_abelii_69_2   (Sumatran orangutan)   12
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   15
Macaca_mulatta_69_1   (Rhesus monkey)   15
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   15
Otolemur_garnettii_69_3   (Small-eared galago)   18
Microcebus_murinus_69_1   (Gray mouse lemur)   18
Rattus_norvegicus_69_3.4   (Norway rat)   14
Mus_musculus_69_38   (House mouse)   18
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   20
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   24
Cavia_porcellus_69_3   (Domestic guinea pig)   16
Oryctolagus_cuniculus_69_2   (Rabbit)   17
Ochotona_princeps_69   (American pika)   12
Tupaia_belangeri_69   (Northern tree shrew)   16
Sus_scrofa_69_10.2   (Pig)   26
Bos_taurus_69_3.1   (Cattle)   16
Vicugna_pacos_69_1   (Alpaca)   13
Tursiops_truncatus_69_1   (Bottlenose dolphin)   16
Mustela_putorius_furo_69_1.0   (Domestic ferret)   18
Ailuropoda_melanoleuca_69_1   (Giant panda)   20
Canis_familiaris_69_3.1   (Dog)   22
Felis_catus_69   (Domestic cat)   17
Equus_caballus_69_2   (Horse)   16
Myotis_lucifugus_69_2.0   (Little brown bat)   16
Pteropus_vampyrus_69_1   (Large flying fox)   24
Sorex_araneus_69_1   (European shrew)   12
Erinaceus_europaeus_69   (Western European hedgehog)   17
Procavia_capensis_69_1   (Cape rock hyrax)   25
Loxodonta_africana_69_3   (African savanna elephant)   15
Echinops_telfairi_69   (Small Madagascar hedgehog)   21
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   19
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   11
Macropus_eugenii_69_1.0   (Tammar wallaby)   22
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   13
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   17
Ornithorhynchus_anatinus_69_5   (Platypus)   18
Petromyzon_marinus_69_7.0   (Sea lamprey)   10
Meleagris_gallopavo_69_2   (Turkey)   18
Gallus_gallus_69_2   (Chicken)   12
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   11
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   17
Anolis_carolinensis_69_2.0   (Green anole)   14
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   15
Latimeria_chalumnae_69_1   (Coelacanth)   19
Gadus_morhua_69_1   (Atlantic cod)   18
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   19
Takifugu_rubripes_69_4   (Torafugu)   19
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   20
Oryzias_latipes_69_1   (Japanese medaka)   18
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   19
Oreochromis_niloticus_69_1.0   (Nile tilapia)   16
Danio_rerio_69_9   (Zebrafish)   26
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   8
Ciona_intestinalis_69   (Vase tunicate)   8
Drosophila_melanogaster_69_5   (Fruit fly)   9
Caenorhabditis_elegans_69_215   (Roundworm)   5
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   7
Arabidopsis_thaliana_10   (Thale cress)   4

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   68
Homo_sapiens__(NCBI_version)   (Human)   31
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   15
Loa_loa_v3.3_(Request)   (Eye worm)   6
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   7
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   7
Encephalitozoon_intestinalis__(endoparasite) 1
Encephalitozoon_cuniculi_(endoparasite) 1
Lotus_japonicus__(Early_assembly) 2
Malus_x_domestica_(Duplicate)   (Apple)   6
Ricinus_communis__(Early_assembly)   (Castor bean)   2
Nicotiana_benthamiana_0.4.4_(Early_draft) 5
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   0
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   0
Phoenix_dactylifera__(Early_draft)   (Date palm)   1
Protein_Data_Bank_(all_PDB_sequenc) 7
PDB_chains_(SCOP_1.75)_(PDB) 2
Protozoadb_2010_08_(Protozoadb) 129
STRING_v9.0.5_(STRING) 1078
Uniprot_2018_03_genome 75935
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 8
NCBI_2017_08_genome 17374
TargetDB__(Targets) 32

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.