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Domain combinations for _gap_,50729,_gap_,144000,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

50729 - PH domain-like
144000 - Oxysterol-binding protein-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Otolemur_garnettii_76_3   (Small-eared galago)   1
Sus_scrofa_76_10.2   (Pig)   1
Bos_taurus_76_3.1   (Cattle)   1
Ovis_aries_76_3.1   (Sheep)   1
Petromyzon_marinus_76_7.0   (Sea lamprey)   1
Gallus_gallus_76_4   (Chicken)   1
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   1
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   1
Latimeria_chalumnae_76_1   (Coelacanth)   1
Lepisosteus_oculatus_76   (Spotted gar)   2
Takifugu_rubripes_76_4   (Torafugu)   1
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   1
Linepithema_humile_v1.1   (Argentine ant)   1
Solenopsis_invicta_v.2.2.3   (Red fire ant)   1
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   1
Lucilia_cuprina   (Australian sheep blowfly)   1
Drosophila_suzukii 1
Drosophila_melanogaster_76_5   (Fruit fly)   2
Daphnia_pulex_   (Common water flea)   1
Strigamia_maritima_22 1
Tetranychus_urticae_   (Two-spotted spider mite)   1
Proterospongia_sp._ATCC_50818_ 1
Monosiga_brevicollis_ 1
Selaginella_moellendorffii_ 1
Malus_domestica_v196   (Apple)   0
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   0
Musa_balbisiana   (Balbis banana)   2
Thecamonas_trahens_ATCC_50062_ 1

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   2
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   2
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   1
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   1

Longest transcript per gene
Genome     Number
Otolemur_garnettii_69_3   (Small-eared galago)   1
Sus_scrofa_69_10.2   (Pig)   1
Bos_taurus_69_3.1   (Cattle)   1
Petromyzon_marinus_69_7.0   (Sea lamprey)   1
Gallus_gallus_69_2   (Chicken)   1
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   1
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   1
Latimeria_chalumnae_69_1   (Coelacanth)   1

Others
Genome     Number
Malus_x_domestica_(Duplicate)   (Apple)   0
STRING_v9.0.5_(STRING) 5
Uniprot_2018_03_genome 1807
NCBI_2017_08_genome 374

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