SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for _gap_,50729,_gap_,54236,47031 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

50729 - PH domain-like
54236 - Ubiquitin-like
47031 - Second domain of FERM

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Macropus_eugenii_76_1.0   (Tammar wallaby)   1
Lepisosteus_oculatus_76   (Spotted gar)   0
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   0
Oryzias_latipes_76_1   (Japanese medaka)   0
Poecilia_formosa_76   (Amazon molly)   0
Danio_rerio_76_9   (Zebrafish)   0

Longest transcript per gene
Genome     Number
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   0
Macropus_eugenii_69_1.0   (Tammar wallaby)   1
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   0
Oryzias_latipes_69_1   (Japanese medaka)   0
Danio_rerio_69_9   (Zebrafish)   0

Others
Genome     Number
STRING_v9.0.5_(STRING) 0
Uniprot_2018_03_genome 0
NCBI_2017_08_genome 0

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