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  Home > SCOP hierarchy > Domain combination - _gap_,50729,_gap_,57863,48403

Domain combinations for _gap_,50729,_gap_,57863,48403 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

50729 - PH domain-like
57863 - ArfGap/RecO-like zinc finger
48403 - Ankyrin repeat

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   8
Pan_troglodytes_76_2.1.4   (Chimpanzee)   1
Gorilla_gorilla_76_3.1   (Western gorilla)   4
Pongo_abelii_76_2   (Sumatran orangutan)   1
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   1
Macaca_mulatta_76_1   (Rhesus monkey)   1
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   1
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   0
Adineta_vaga 0
Crassostrea_gigas_22   (Pacific oyster)   0
Capitella_sp._I_ 0
Danaus_plexippus_OGS1.0   (Monarch butterfly)   0
Drosophila_willistoni_1.3 0
Drosophila_pseudoobscura_2.13 0
Drosophila_ananassae_1.3 0
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   0
Anopheles_darlingi_22   (American malaria mosquito)   0
Anopheles_gambiae_49_3j   (African malaria mosquito)   0
Strigamia_maritima_22 0
Meloidogyne_incognita_   (Southern root-knot nematode)   0
Meloidogyne_hapla_ 0
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   1
Caenorhabditis_elegans_76_235   (Roundworm)   0
Caenorhabditis_briggsae_2 0
Trichinella_spiralis_22 0
Hymenolepis_microstoma_ 0
Schistosoma_mansoni_ 0
Hydra_vulgaris 1
Phycomyces_blakesleeanus_ 0
Theobroma_cacao_B97-61/B2_v1   (Cacao)   0
Malus_domestica_v196   (Apple)   0
Musa_balbisiana   (Balbis banana)   0
Bathycoccus_prasinos_ 0

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Strains
Genome     Number
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   0
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   0
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   0

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   7
Pan_troglodytes_69_2.1.4   (Chimpanzee)   1
Gorilla_gorilla_69_3.1   (Western gorilla)   3
Pongo_abelii_69_2   (Sumatran orangutan)   1
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   1
Macaca_mulatta_69_1   (Rhesus monkey)   1
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   1
Caenorhabditis_elegans_69_215   (Roundworm)   0

Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   12
Homo_sapiens__(NCBI_version)   (Human)   7
Loa_loa_v3.3_(Request)   (Eye worm)   1
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   1
Malus_x_domestica_(Duplicate)   (Apple)   0
TargetDB__(Targets) 0
STRING_v9.0.5_(STRING) 10
NCBI_2017_08_genome 106
Uniprot_2018_03_genome 1358

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.