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Domain combinations for _gap_,50978,50978,47473 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

50978 - WD40 repeat-like
50978 - WD40 repeat-like
47473 - EF-hand

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Pan_troglodytes_76_2.1.4   (Chimpanzee)   1
Gorilla_gorilla_76_3.1   (Western gorilla)   2
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   1
Pteropus_vampyrus_76_1   (Large flying fox)   1
Saccoglossus_kowalevskii_v3.0 0
Petromyzon_marinus_76_7.0   (Sea lamprey)   1
Anas_platyrhynchos_76_1.0   (Mallard)   1
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   0
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   1
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   1
Poecilia_formosa_76   (Amazon molly)   1
Oreochromis_niloticus_76_1.0   (Nile tilapia)   0
Oikopleura_dioica 1
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   1
Ciona_intestinalis_76   (Vase tunicate)   1
Adineta_vaga 0
Capitella_sp._I_ 0
Mnemiopsis_leidyi   (Sea walnut)   1
Hydra_vulgaris 1
Proterospongia_sp._ATCC_50818_ 1
Pythium_arrhenomanes_ATCC_12531_22 0
Pythium_aphanidermatum_DAOM_BR444_22 1
Phytophthora_capsici_ 1
Tetrahymena_thermophila_SB210_1_ 0

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   1

Longest transcript per gene
Genome     Number
Pan_troglodytes_69_2.1.4   (Chimpanzee)   1
Gorilla_gorilla_69_3.1   (Western gorilla)   1
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   1
Pteropus_vampyrus_69_1   (Large flying fox)   1
Petromyzon_marinus_69_7.0   (Sea lamprey)   1
Gallus_gallus_69_2   (Chicken)   1
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   0
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   1
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   1
Oreochromis_niloticus_69_1.0   (Nile tilapia)   0
Ciona_intestinalis_69   (Vase tunicate)   1

Others
Genome     Number
STRING_v9.0.5_(STRING) 4
TargetDB__(Targets) 1
Uniprot_2018_03_genome 378
NCBI_2017_08_genome 51

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