SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for _gap_,50985,_gap_,159034,_gap_,46934,_gap_,63748,49785,50985,_gap_,50985,_gap_,56204,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

50985 - RCC1/BLIP-II
159034 - Mib/herc2 domain-like
46934 - UBA-like
63748 - Tudor/PWWP/MBT
49785 - Galactose-binding domain-like
50985 - RCC1/BLIP-II
50985 - RCC1/BLIP-II
56204 - Hect, E3 ligase catalytic domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Drosophila_melanogaster_76_5   (Fruit fly)   1

Strains
Genome     Number
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   1

Longest transcript per gene
Genome     Number
Drosophila_melanogaster_69_5   (Fruit fly)   1

Others
Genome     Number
STRING_v9.0.5_(STRING) 1
Uniprot_2018_03_genome 85
NCBI_2017_08_genome 2

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