SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain combinations for _gap_,50985,_gap_,55856,_gap_,159034,_gap_,63748,_gap_,49785,50985,50985,_gap_,50985,_gap_,56204,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

50985 - RCC1/BLIP-II
55856 - Cytochrome b5-like heme/steroid binding domain
159034 - Mib/herc2 domain-like
63748 - Tudor/PWWP/MBT
49785 - Galactose-binding domain-like
50985 - RCC1/BLIP-II
50985 - RCC1/BLIP-II
50985 - RCC1/BLIP-II
56204 - Hect, E3 ligase catalytic domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


Jump to [ Top of page · Domain combinations in individual genomes ]

Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   1
Otolemur_garnettii_76_3   (Small-eared galago)   1
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   1
Bos_taurus_76_3.1   (Cattle)   2
Ovis_aries_76_3.1   (Sheep)   1
Pteropus_vampyrus_76_1   (Large flying fox)   1
Loxodonta_africana_76_3   (African savanna elephant)   1
Gallus_gallus_76_4   (Chicken)   1
Anas_platyrhynchos_76_1.0   (Mallard)   1
Ficedula_albicollis_76_1.0   (Collared flycatcher)   1
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   1
Takifugu_rubripes_76_4   (Torafugu)   1

Longest transcript per gene
Genome     Number
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   1
Otolemur_garnettii_69_3   (Small-eared galago)   1
Bos_taurus_69_3.1   (Cattle)   1
Pteropus_vampyrus_69_1   (Large flying fox)   1
Loxodonta_africana_69_3   (African savanna elephant)   1
Gallus_gallus_69_2   (Chicken)   2
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   1
Takifugu_rubripes_69_4   (Torafugu)   1

Others
Genome     Number
STRING_v9.0.5_(STRING) 4
Uniprot_2018_03_genome 6533
NCBI_2017_08_genome 159

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]