SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain combinations for _gap_,50985,_gap_,55856,_gap_,159034,_gap_,63748,_gap_,49785,50985,_gap_,50985,_gap_,56204,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

50985 - RCC1/BLIP-II
55856 - Cytochrome b5-like heme/steroid binding domain
159034 - Mib/herc2 domain-like
63748 - Tudor/PWWP/MBT
49785 - Galactose-binding domain-like
50985 - RCC1/BLIP-II
50985 - RCC1/BLIP-II
56204 - Hect, E3 ligase catalytic domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


Jump to [ Top of page · Domain combinations in individual genomes ]

Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   1
Pan_troglodytes_76_2.1.4   (Chimpanzee)   1
Gorilla_gorilla_76_3.1   (Western gorilla)   1
Rattus_norvegicus_76_5.0   (Norway rat)   1
Mus_musculus_76_38   (House mouse)   2
Cavia_porcellus_76_3   (Domestic guinea pig)   1
Oryctolagus_cuniculus_76_2   (Rabbit)   1
Mustela_putorius_furo_76_1.0   (Domestic ferret)   1
Canis_familiaris_76_3.1   (Dog)   1
Felis_catus_76_6.2   (Domestic cat)   1
Equus_caballus_76_2   (Horse)   1
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   1
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   1
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   1
Anolis_carolinensis_76_2.0   (Green anole)   1
Lepisosteus_oculatus_76   (Spotted gar)   2
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   1
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   1

Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   1

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   2
Pan_troglodytes_69_2.1.4   (Chimpanzee)   1
Gorilla_gorilla_69_3.1   (Western gorilla)   1
Rattus_norvegicus_69_3.4   (Norway rat)   1
Mus_musculus_69_38   (House mouse)   1
Cavia_porcellus_69_3   (Domestic guinea pig)   1
Oryctolagus_cuniculus_69_2   (Rabbit)   1
Mustela_putorius_furo_69_1.0   (Domestic ferret)   1
Canis_familiaris_69_3.1   (Dog)   1
Equus_caballus_69_2   (Horse)   1
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   1
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   1
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   1
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   1

Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   2
Homo_sapiens__(NCBI_version)   (Human)   1
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   1
STRING_v9.0.5_(STRING) 15
Uniprot_2018_03_genome 8856
NCBI_2017_08_genome 184

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]