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  Home > SCOP hierarchy > Domain combination - _gap_,51110,51110,_gap_,56112,_gap_

Domain combinations for _gap_,51110,51110,_gap_,56112,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

51110 - alpha-D-mannose-specific plant lectins
51110 - alpha-D-mannose-specific plant lectins
56112 - Protein kinase-like (PK-like)

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Pinus_taeda   (Loblolly pine)   4
Picea_abies   (Norway spruce)   2
Theobroma_cacao_B97-61/B2_v1   (Cacao)   1
Thellungiella_halophila_v173 1
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   2
Arabidopsis_thaliana_10   (Thale cress)   1
Carica_papaya_   (Papaya)   1
Populus_trichocarpa_v156   (Black cottonwood)   2
Mimulus_guttatus_v140   (Spotted monkey flower)   1
Actinidia_chinensis_Hongyang_ 2

Strains
Genome     Number
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   2

Longest transcript per gene
Genome     Number
Arabidopsis_thaliana_10   (Thale cress)   1

Others
Genome     Number
Lotus_japonicus__(Early_assembly) 1
Ricinus_communis__(Early_assembly)   (Castor bean)   0
STRING_v9.0.5_(STRING) 2
Uniprot_2018_03_genome 324
NCBI_2017_08_genome 30

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.