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  Home > SCOP hierarchy > Domain combination - _gap_,51110,_gap_

Domain combinations for _gap_,51110,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

51110 - alpha-D-mannose-specific plant lectins

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   0
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   1
Sphaeroforma_arctica_JP610_ 0
Conidiobolus_coronatus_NRRL28638_v1.0 0
Mixia_osmundae_IAM_14324_v1.0 0
Nectria_haematococca_mpVI_ 0
Allomyces_macrogynus_ATCC_38327_ 1
Dictyostelium_purpureum_ 1
Selaginella_moellendorffii_ 24
Pinus_taeda   (Loblolly pine)   7
Picea_abies   (Norway spruce)   12
Eucalyptus_grandis_v201   (Rose gum)   24
Theobroma_cacao_B97-61/B2_v1   (Cacao)   12
Gossypium_raimondii_v221 18
Citrus_clementina_v165 31
Citrus_sinensis_v154   (Sweet orange)   23
Thellungiella_halophila_v173 8
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   13
Capsella_rubella_v183 6
Arabidopsis_lyrata_   (Lyrate rockcress)   12
Arabidopsis_thaliana_10   (Thale cress)   10
Carica_papaya_   (Papaya)   9
Medicago_truncatula_   (Barrel medic)   16
Phaseolus_vulgaris_v186   (French bean)   8
Glycine_max_v109   (Soybean)   10
Cucumis_sativus_v122   (Cucumber)   7
Fragaria_vesca_   (Wild strawberry)   15
Malus_domestica_v196   (Apple)   50
Prunus_persica_v139   (Peach)   10
Linum_usitatissimum_v200   (Flax)   9
Manihot_esculenta_v147   (Cassava)   24
Populus_trichocarpa_v156   (Black cottonwood)   36
Vitis_vinifera_   (Wine grape)   12
Mimulus_guttatus_v140   (Spotted monkey flower)   3
Solanum_lycopersicum_v.2.3   (Tomato)   8
Solanum_tuberosum_   (Potato)   26
Actinidia_chinensis_Hongyang_ 19
Aquilegia_coerulea_v195 16
Triticum_urartu_22 5
Triticum_aestivum_22   (Bread wheat)   38
Aegilops_tauschii_22 15
Brachypodium_distachyon_   (Stiff brome)   9
Oryza_barthii_22   (African wild rice)   10
Oryza_meridionalis_22 9
Oryza_glumaepatula_22 16
Oryza_glaberrima   (African rice)   13
Oryza_punctata_22 10
Oryza_nivara_22 16
Oryza_brachyantha_22   (Malo sina)   7
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   10
Oryza_sativa_v193   (Rice)   10
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   14
Panicum_virgatum_v202   (Switchgrass)   33
Setaria_italica_v164   (Foxtail millet)   15
Zea_mays_subsp._mays_   (Maize)   13
Zea_mays_v181   (Maize)   16
Sorghum_bicolor_   (Sorghum)   11
Musa_balbisiana   (Balbis banana)   9
Musa_acuminata_22   (Wild Malaysian banana)   9
Amborella_trichopoda_22 5
Physcomitrella_patens 5
Chlamydomonas_reinhardtii_4.0 1
Bigelowiella_natans_CCMP2755_22 1
Ectocarpus_siliculosus 1
Fragilariopsis_cylindrus 4
Naegleria_gruberi_ 3
Guillardia_theta_CCMP2712_v1.0_ 0
Emiliania_huxleyi_CCMP1516_ 1
Acidimicrobium_ferrooxidans_DSM_10331 1
Streptomyces_sp._PAMC26508 1
Streptomyces_flavogriseus_ATCC_33331 1
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 1
Paenibacillus_mucilaginosus_3016 1
Haliscomenobacter_hydrossis_DSM_1100 0
Terriglobus_roseus_DSM_18391 0
Geobacter_daltonii_FRC-32 1
Geobacter_uraniireducens_Rf4 1
Geobacter_metallireducens_GS-15 1
Pelobacter_propionicus_DSM_2379 1
Sorangium_cellulosum_'So_ce_56' 1
Cupriavidus_metallidurans_CH34 0

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Strains
Genome     Number
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   7
Hordeum_vulgare_22   (Domesticated barley)   47
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   11
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 1

Longest transcript per gene
Genome     Number
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   0
Arabidopsis_thaliana_10   (Thale cress)   10

Others
Genome     Number
Lotus_japonicus__(Early_assembly) 20
Malus_x_domestica_(Duplicate)   (Apple)   50
Ricinus_communis__(Early_assembly)   (Castor bean)   11
Nicotiana_benthamiana_0.4.4_(Early_draft) 11
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   9
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   8
Phoenix_dactylifera__(Early_draft)   (Date palm)   4
NCBI_plasmid_sequences_(Plasmids) 0
STRING_v9.0.5_(STRING) 178
NCBI_2017_08_genome 1112
Uniprot_2018_03_genome 9915
NCBI_viral_sequences_(Viral) 1

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.