SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for _gap_,51110,_gap_,56112,51110,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

51110 - alpha-D-mannose-specific plant lectins
56112 - Protein kinase-like (PK-like)
51110 - alpha-D-mannose-specific plant lectins

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Citrus_sinensis_v154   (Sweet orange)   1
Medicago_truncatula_   (Barrel medic)   1
Fragaria_vesca_   (Wild strawberry)   2
Malus_domestica_v196   (Apple)   2
Linum_usitatissimum_v200   (Flax)   1
Vitis_vinifera_   (Wine grape)   0
Solanum_lycopersicum_v.2.3   (Tomato)   0
Solanum_tuberosum_   (Potato)   0
Actinidia_chinensis_Hongyang_ 1
Oryza_barthii_22   (African wild rice)   0
Oryza_meridionalis_22 0
Oryza_glumaepatula_22 0
Oryza_punctata_22 0
Oryza_nivara_22 0

Strains
Genome     Number
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   0

Others
Genome     Number
Malus_x_domestica_(Duplicate)   (Apple)   2
Ricinus_communis__(Early_assembly)   (Castor bean)   0
Nicotiana_benthamiana_0.4.4_(Early_draft) 1
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   0
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   0
NCBI_2017_08_genome 1
STRING_v9.0.5_(STRING) 0
Uniprot_2018_03_genome 85

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