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  Home > SCOP hierarchy > Domain combination - _gap_,51110,_gap_,56112,_gap_

Domain combinations for _gap_,51110,_gap_,56112,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

51110 - alpha-D-mannose-specific plant lectins
56112 - Protein kinase-like (PK-like)

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Pinus_taeda   (Loblolly pine)   3
Picea_abies   (Norway spruce)   3
Eucalyptus_grandis_v201   (Rose gum)   3
Theobroma_cacao_B97-61/B2_v1   (Cacao)   10
Gossypium_raimondii_v221 11
Citrus_clementina_v165 4
Citrus_sinensis_v154   (Sweet orange)   2
Thellungiella_halophila_v173 1
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   5
Capsella_rubella_v183 4
Arabidopsis_lyrata_   (Lyrate rockcress)   4
Arabidopsis_thaliana_10   (Thale cress)   2
Carica_papaya_   (Papaya)   2
Medicago_truncatula_   (Barrel medic)   8
Phaseolus_vulgaris_v186   (French bean)   4
Glycine_max_v109   (Soybean)   3
Cucumis_sativus_v122   (Cucumber)   1
Fragaria_vesca_   (Wild strawberry)   7
Malus_domestica_v196   (Apple)   21
Prunus_persica_v139   (Peach)   3
Linum_usitatissimum_v200   (Flax)   6
Manihot_esculenta_v147   (Cassava)   4
Populus_trichocarpa_v156   (Black cottonwood)   5
Vitis_vinifera_   (Wine grape)   5
Mimulus_guttatus_v140   (Spotted monkey flower)   3
Solanum_lycopersicum_v.2.3   (Tomato)   3
Solanum_tuberosum_   (Potato)   6
Actinidia_chinensis_Hongyang_ 2
Aquilegia_coerulea_v195 7
Triticum_urartu_22 5
Triticum_aestivum_22   (Bread wheat)   3
Aegilops_tauschii_22 4
Brachypodium_distachyon_   (Stiff brome)   5
Oryza_barthii_22   (African wild rice)   5
Oryza_meridionalis_22 3
Oryza_glumaepatula_22 10
Oryza_glaberrima   (African rice)   6
Oryza_punctata_22 5
Oryza_nivara_22 5
Oryza_brachyantha_22   (Malo sina)   5
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   9
Oryza_sativa_v193   (Rice)   9
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   4
Panicum_virgatum_v202   (Switchgrass)   1
Setaria_italica_v164   (Foxtail millet)   5
Zea_mays_subsp._mays_   (Maize)   3
Zea_mays_v181   (Maize)   4
Sorghum_bicolor_   (Sorghum)   7
Musa_balbisiana   (Balbis banana)   7
Musa_acuminata_22   (Wild Malaysian banana)   2
Amborella_trichopoda_22 1

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Strains
Genome     Number
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   7
Hordeum_vulgare_22   (Domesticated barley)   2
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   7

Longest transcript per gene
Genome     Number
Arabidopsis_thaliana_10   (Thale cress)   2

Others
Genome     Number
Malus_x_domestica_(Duplicate)   (Apple)   21
Ricinus_communis__(Early_assembly)   (Castor bean)   4
Nicotiana_benthamiana_0.4.4_(Early_draft) 4
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   3
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   3
Phoenix_dactylifera__(Early_draft)   (Date palm)   1
STRING_v9.0.5_(STRING) 33
NCBI_2017_08_genome 401
Uniprot_2018_03_genome 6136

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.