SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain combinations for _gap_,51126,51126,51126,51126 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

51126 - Pectin lyase-like
51126 - Pectin lyase-like
51126 - Pectin lyase-like
51126 - Pectin lyase-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


Jump to [ Top of page · Domain combinations in individual genomes ]

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Capsaspora_owczarzaki_ATCC_30864_ 0
Verticillium_albo-atrum_VaMs.102_ 0
Verticillium_dahliae_VdLs.17_ 0
Fusarium_graminearum_ 0
Nectria_haematococca_mpVI_ 0
Fusarium_verticillioides_7600_ 0
Pinus_taeda   (Loblolly pine)   1
Thecamonas_trahens_ATCC_50062_ 0
Bigelowiella_natans_CCMP2755_22 0
Cyanophora_paradoxa_ 1
Leishmania_major_strain_Friedlin_ 0
Trypanosoma_vivax_ 0
Phytophthora_capsici_ 0
Trichomonas_vaginalis_ 0
Guillardia_theta_CCMP2712_v1.0_ 0
Thermosynechococcus_elongatus_BP-1 1
Trichodesmium_erythraeum_IMS101 0
Nostoc_punctiforme_PCC_73102 0
Nostoc_sp._PCC_7524 1
Eubacterium_limosum_KIST612 0
Exiguobacterium_sp._MH3 1
Rhodopirellula_baltica_SH_1 0
Treponema_azotonutricium_ZAS-9 1
Acidithiobacillus_ferrivorans_SS3 0
Desulfovibrio_magneticus_RS-1 0
Geobacter_daltonii_FRC-32 0
Burkholderia_sp._CCGE1002 0
Burkholderia_ambifaria_AMMD 0
Burkholderia_cenocepacia_HI2424 0
Burkholderia_multivorans_ATCC_17616 0
Collimonas_fungivorans_Ter331 0
Bordetella_parapertussis_12822 0
Bordetella_bronchiseptica_RB50 0
Achromobacter_xylosoxidans_A8 0
Sphingobium_chlorophenolicum_L-1 0
Sphingomonas_sp._MM-1 0
Azospirillum_lipoferum_4B 0
Acidiphilium_multivorum_AIU301 0
Micavibrio_aeruginosavorus_ARL-13 0
Starkeya_novella_DSM_506 0
Azorhizobium_caulinodans_ORS_571 0
Methylobacterium_populi_BJ001 0
Parvibaculum_lavamentivorans_DS-1 0
Ochrobactrum_anthropi_ATCC_49188 0
Brucella_microti_CCM_4915 0
Brucella_pinnipedialis_B2/94 0
Brucella_ovis_ATCC_25840 0
Brucella_abortus_S19 0
Mesorhizobium_sp._BNC1 0
Nitrobacter_hamburgensis_X14 0
Alteromonas_sp._SN2 0
Stenotrophomonas_maltophilia_K279a 0
Xanthomonas_axonopodis_pv._citri_str._306 0
Xanthomonas_oryzae_pv._oryzae_PXO99A 0
Xanthomonas_campestris_pv._campestris_str._B100 0
Pseudomonas_entomophila_L48 0
Thioalkalimicrobium_cyclicum_ALM1 0
Methanosphaera_stadtmanae_DSM_3091 0
Methanobrevibacter_ruminantium_M1 1
Methanobrevibacter_smithii_ATCC_35061 0

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number
Dactylococcopsis_salina_PCC_8305 0
Arthrospira_platensis_NIES-39 0
Mycobacterium_sp._MOTT36Y 0
Mycobacterium_yongonense_05-1390 0
Burkholderia_lata 0
Burkholderia_ambifaria_MC40-6 0
Burkholderia_cenocepacia_MC0-3 0
Burkholderia_cenocepacia_J2315 0
Burkholderia_multivorans_ATCC_17616 0
Burkholderia_cepacia_GG4 0
Variovorax_paradoxus_EPS 0
Bordetella_parapertussis_Bpp5 0
Bordetella_bronchiseptica_MO149 0
Bordetella_bronchiseptica_253 0
Micavibrio_aeruginosavorus_EPB 0
Brucella_ceti_TE10759-12 0
Brucella_canis_HSK_A52141 0
Brucella_suis_VBI22 0
Brucella_suis_1330 0
Brucella_suis_1330 0
Brucella_melitensis_NI 0
Brucella_melitensis_M5-90 0
Brucella_melitensis_M28 0
Brucella_abortus_A13334 0
Brucella_melitensis_biovar_Abortus_2308 0
Brucella_abortus_bv._1_str._9-941 0
Stenotrophomonas_maltophilia_D457 0
Stenotrophomonas_maltophilia_JV3 0
Stenotrophomonas_maltophilia_R551-3 0
Xanthomonas_citri_subsp._citri_Aw12879 0
Xanthomonas_campestris_pv._vesicatoria_str._85-10 0
Xanthomonas_axonopodis_pv._citrumelo_F1 0
Xanthomonas_axonopodis_Xac29-1 0
Xanthomonas_oryzae_pv._oryzicola_BLS256 0
Xanthomonas_oryzae_pv._oryzae_KACC_10331 0
Xanthomonas_campestris_pv._raphani_756C 0
Xanthomonas_campestris_pv._campestris_str._8004 0
Xanthomonas_campestris_pv._campestris_str._ATCC_33913 0
Salmonella_bongori_N268-08 0
Salmonella_enterica_subsp._enterica_serovar_Javiana_str._CFSAN001992 0
Salmonella_enterica_subsp._enterica_serovar_Enteritidis_str._P125109 0
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._U288 0
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._798 0
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._T000240 0
Salmonella_enterica_subsp._enterica_Serovar_Heidelberg_str._CFSAN002069 0
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._B182 0
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._41578 0
Salmonella_enterica_subsp._enterica_serovar_Gallinarum/pullorum_str._CDC1983-67 0
Salmonella_enterica_subsp._enterica_serovar_Gallinarum/pullorum_str._RKS5078 0
Pseudomonas_fluorescens_A506 0
Pseudomonas_mendocina_NK-01 0

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Others
Genome     Number
NCBI_plasmid_sequences_(Plasmids) 0
NCBI_2017_08_genome 32
Protozoadb_2010_08_(Protozoadb) 0
TargetDB__(Targets) 0
STRING_v9.0.5_(STRING) 1
Uniprot_2018_03_genome 252

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]