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Domain combinations for _gap_,51126,51126,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

51126 - Pectin lyase-like
51126 - Pectin lyase-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Pongo_abelii_76_2   (Sumatran orangutan)   1
Papio_anubis_76   (Olive baboon)   1
Macaca_mulatta_76_1   (Rhesus monkey)   0
Rattus_norvegicus_76_5.0   (Norway rat)   1
Mus_musculus_76_38   (House mouse)   1
Oryctolagus_cuniculus_76_2   (Rabbit)   1
Canis_familiaris_76_3.1   (Dog)   1
Equus_caballus_76_2   (Horse)   1
Myotis_lucifugus_76_2.0   (Little brown bat)   0
Sorex_araneus_76_1   (European shrew)   0
Erinaceus_europaeus_76   (Western European hedgehog)   1
Loxodonta_africana_76_3   (African savanna elephant)   1
Anas_platyrhynchos_76_1.0   (Mallard)   0
Ficedula_albicollis_76_1.0   (Collared flycatcher)   0
Adineta_vaga 1
Anopheles_gambiae_49_3j   (African malaria mosquito)   0
Tribolium_castaneum_3.0   (Red flour beetle)   0
Caenorhabditis_brenneri_ 0
Caenorhabditis_remanei_ 0
Caenorhabditis_elegans_76_235   (Roundworm)   0
Caenorhabditis_briggsae_2 0
Acropora_digitifera_v1.0 2
Nematostella_vectensis_1.0   (Starlet sea anemone)   1
Trichoplax_adhaerens_ 2
Proterospongia_sp._ATCC_50818_ 0
Capsaspora_owczarzaki_ATCC_30864_ 2
Apiospora_montagnei_NRRL_25634_v1.0 0
Magnaporthe_poae_ATCC_64411_22 3
Magnaporthe_grisea_70-15_ 0
Podospora_anserina_ 0
Thielavia_terrestris_NRRL_8126_ 1
Chaetomium_globosum_CBS_148.51_ 2
Neurospora_tetrasperma_ 1
Neurospora_crassa_OR74A_ 1
Verticillium_dahliae_VdLs.17_ 1
Acremonium_alcalophilumv_1.0 1
Glomerella_graminicola_22 1
Nectria_haematococca_mpVI_ 1
Trichoderma_asperellum_CBS_433.97_v1.0 1
Trichoderma_citrinoviride_v1.0 1
Trichoderma_harzianum_CBS_226.95_v1.0 1
Cochliobolus_victoriae_FI3_v1.0 0
Cochliobolus_carbonum_26-R-13_v1.0 0
Pyrenophora_teres_f._teres_22 1
Paracoccidioides_brasiliensis_Pb18_ 0
Ajellomyces_dermatitidis_SLH14081_ 1
Microsporum_canis_CBS_113480_ 1
Uncinocarpus_reesii_1704_ 0
Aspergillus_acidus_v1.0 1
Aspergillus_nidulans_FGSC_A4_ 0
Aspergillus_carbonarius_ITEM_5010_ 1
Neosartorya_fischeri_NRRL_181_ 1
Aspergillus_terreus_NIH2624_ 2
Aspergillus_tubingensis_v1.0 0
Aspergillus_niger_22 0
Aspergillus_niger_ATCC_1015_ 0
Penicillium_marneffei_ATCC_18224_ 1
Allomyces_macrogynus_ATCC_38327_ 1
Dictyostelium_purpureum_ 1
Chlorella_variabilis_sp._NC64A_ 2
Chlamydomonas_reinhardtii_4.0 4
Bathycoccus_prasinos_ 1
Micromonas_sp._RCC299_ 0
Thecamonas_trahens_ATCC_50062_ 2
Bigelowiella_natans_CCMP2755_22 0
Cyanophora_paradoxa_ 2
Leishmania_infantum_JPCM5_2.4 0
Trypanosoma_cruzi_strain_CL_Brener 2
Trypanosoma_brucei_gambiense_v4.1 0
Trypanosoma_brucei_TREU927_v4.1 0
Ectocarpus_siliculosus 6
Aureococcus_anophagefferens_ 1
Phytophthora_capsici_ 0
Hyaloperonospora_arabidopsidis_22 1
Paramecium_tetraurelia_ 2
Tetrahymena_thermophila_SB210_1_ 7
Symbiodinium_minutum_clade_B1_v1.2 3
Naegleria_gruberi_ 2
Guillardia_theta_CCMP2712_v1.0_ 0
Emiliania_huxleyi_CCMP1516_ 2
Leptolyngbya_sp._PCC_7376 3
Trichodesmium_erythraeum_IMS101 0
Geitlerinema_sp._PCC_7407 1
Rivularia_sp._PCC_7116 2
Mycoplasma_pulmonis_UAB_CTIP 1
Ilumatobacter_coccineus 1
Bifidobacterium_bifidum_S17 1
Herpetosiphon_aurantiacus_DSM_785 1
Roseiflexus_sp._RS-1 1
Chloroflexus_sp._Y-400-fl 1
Chloroflexus_aurantiacus_J-10-fl 1
Clostridium_phytofermentans_ISDg 0
Eubacterium_rectale_M104/1 0
Clostridium_cellulovorans_743B 2
Paenibacillus_sp._JDR-2 0
Bacillus_licheniformis_DSM_13_=_ATCC_14580 1
Candidatus_Cloacamonas_acidaminovorans 0
Niastella_koreensis_GR20-10 1
Chitinophaga_pinensis_DSM_2588 0
Dyadobacter_fermentans_DSM_18053 1
Cytophaga_hutchinsonii_ATCC_33406 0
Simkania_negevensis_Z 0
Chlamydophila_pecorum_E58 0
Pirellula_staleyi_DSM_6068 0
Treponema_primitia_ZAS-2 0
candidate_division_SR1_bacterium_RAAC1_SR1_1 0
Desulfatibacillum_alkenivorans_AK-01 1
Desulfococcus_oleovorans_Hxd3 1
Sorangium_cellulosum_'So_ce_56' 1
Corallococcus_coralloides_DSM_2259 1
Laribacter_hongkongensis_HLHK9 0
Cupriavidus_metallidurans_CH34 0
Burkholderia_sp._CCGE1002 0
Burkholderia_cenocepacia_HI2424 0
Burkholderia_gladioli_BSR3 0
Collimonas_fungivorans_Ter331 0
Achromobacter_xylosoxidans_A8 0
Sideroxydans_lithotrophicus_ES-1 0
Sphingobium_sp._SYK-6 0
Tistrella_mobilis_KA081020-065 1
Azospirillum_lipoferum_4B 0
Granulibacter_bethesdensis_CGDNIH1 0
Acidiphilium_multivorum_AIU301 1
Acidiphilium_cryptum_JF-5 1
Rhizobium_leguminosarum_bv._viciae_3841 0
Mesorhizobium_opportunistum_WSM2075 0
Bradyrhizobium_japonicum_USDA_110 0
Bartonella_grahamii_as4aup 0
Shewanella_denitrificans_OS217 0
Pseudoalteromonas_atlantica_T6c 1
Hahella_chejuensis_KCTC_2396 1
Xanthomonas_campestris_pv._campestris_str._B100 0
Candidatus_Hamiltonella_defensa_5AT_(Acyrthosiphon_pisum) 0
Enterobacteriaceae_bacterium_strain_FGI_57 0
Escherichia_coli_'BL21-Gold(DE3)pLysS_AG' 0
Thioalkalimicrobium_cyclicum_ALM1 0
Vulcanisaeta_moutnovskia_768-28 1
Methanoculleus_bourgensis_MS2 0
Salinarchaeum_sp._Harcht-Bsk1 0
Haloquadratum_walsbyi_DSM_16790 1
Methanosphaera_stadtmanae_DSM_3091 3
Methanobrevibacter_sp._AbM4 1
Methanobrevibacter_ruminantium_M1 4
Methanobrevibacter_smithii_ATCC_35061 3

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Strains
Genome     Number
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   0
Paracoccidioides_brasiliensis_Pb01_ 0
Paracoccidioides_brasiliensis_Pb03_ 0
Ajellomyces_dermatitidis_ER-3_ 1
Histoplasma_capsulatum_H143 0
Histoplasma_capsulatum_H88 0
Histoplasma_capsulatum_G186AR 0
Trypanosoma_brucei_Lister_427_v4.1 0
Dactylococcopsis_salina_PCC_8305 0
Oscillatoria_nigro-viridis_PCC_7112 0
Oscillatoria_acuminata_PCC_6304 0
Stanieria_cyanosphaera_PCC_7437 1
Cylindrospermum_stagnale_PCC_7417 0
Bifidobacterium_bifidum_BGN4 1
Deinococcus_peraridilitoris_DSM_19664 1
Clostridium_thermocellum_DSM_1313 0
Bacillus_subtilis_PY79 1
Bacillus_licheniformis_DSM_13_=_ATCC_14580 1
Sorangium_cellulosum_So0157-2 1
Burkholderia_sp._CCGE1003 0
Burkholderia_lata 0
Burkholderia_cenocepacia_MC0-3 0
Burkholderia_cenocepacia_AU_1054 0
Burkholderia_cenocepacia_J2315 0
Variovorax_paradoxus_B4 0
Variovorax_paradoxus_EPS 0
Achromobacter_xylosoxidans_NBRC_15126_=_ATCC_27061 0
Brucella_abortus_bv._1_str._9-941 0
Sinorhizobium_meliloti_Rm41 0
Rhizobium_leguminosarum_bv._trifolii_WSM1325 0
Rhodopseudomonas_palustris_TIE-1 0
Rhodopseudomonas_palustris_CGA009 0
Bradyrhizobium_sp._S23321 0
Bradyrhizobium_japonicum_USDA_6 0
Mannheimia_haemolytica_USDA-ARS-USMARC-185 0
Stenotrophomonas_maltophilia_D457 0
Xanthomonas_oryzae_pv._oryzicola_BLS256 0
Xanthomonas_oryzae_pv._oryzae_MAFF_311018 0
Xanthomonas_campestris_pv._campestris_str._8004 0
Xanthomonas_campestris_pv._campestris_str._ATCC_33913 0
Salmonella_enterica_subsp._enterica_serovar_4,[5],12:i:-_str._08-1736 0
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_var._5-_str._CFSAN001921 0
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._UK-1 0
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._ST4/74 0
Salmonella_enterica_The_genome_of__subsp._enterica_serovar_Typhimurium_str._DT2 0
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._D23580 0
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._SL1344 0
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._14028S 0
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._LT2 0
Salmonella_enterica_subsp._enterica_serovar_Agona_str._24249 0
Escherichia_coli_E24377A 0
Escherichia_coli_LY180 0
Escherichia_coli_APEC_O78 0
Escherichia_coli_O104:H4_str._2009EL-2050 0
Escherichia_coli_O104:H4_str._2009EL-2071 0
Escherichia_coli_O104:H4_str._2011C-3493 0
Escherichia_coli_042 0
Escherichia_coli_Xuzhou21 0
Escherichia_coli_UMNK88 0
Escherichia_coli_KO11FL 0
Escherichia_coli_KO11FL 0
Escherichia_coli_UMN026 0
Escherichia_coli_55989 0
Escherichia_coli_IAI1 0
Escherichia_coli_DH1 0
Escherichia_coli_DH1 0
Escherichia_coli_ATCC_8739 0
Escherichia_coli_BL21(DE3) 0
Escherichia_coli_BL21(DE3) 0
Escherichia_coli_SE11 0
Escherichia_coli_O103:H2_str._12009 0
Escherichia_coli_HS 0
Escherichia_coli_ETEC_H10407 0
Escherichia_coli_O55:H7_str._RM12579 0
Escherichia_coli_O55:H7_str._CB9615 0
Escherichia_coli_O26:H11_str._11368 0
Escherichia_coli_O111:H-_str._11128 0
Escherichia_coli_O157:H7_str._TW14359 0
Escherichia_coli_O157:H7_str._EC4115 0
Escherichia_coli_O157:H7_str._Sakai 0
Escherichia_coli_O157:H7_str._EDL933 0
Escherichia_coli_str._K-12_substr._MDS42 0
Escherichia_coli_BW2952 0
Escherichia_coli_str._K-12_substr._MG1655 0
Escherichia_coli_str._K-12_substr._W3110 0
Escherichia_coli_str._K-12_substr._DH10B 0
Escherichia_coli_B_str._REL606 0
Enterobacter_cloacae_SCF1 0
Pseudomonas_fluorescens_A506 0
Pseudomonas_fluorescens_Pf0-1 0
Pseudomonas_resinovorans_NBRC_106553 1
Methanolobus_psychrophilus_R15 0
Candidatus_Methanomassiliicoccus_intestinalis_Issoire-Mx1 2
Methanobacterium_sp._SWAN-1 0

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Longest transcript per gene
Genome     Number
Pongo_abelii_69_2   (Sumatran orangutan)   1
Macaca_mulatta_69_1   (Rhesus monkey)   0
Rattus_norvegicus_69_3.4   (Norway rat)   1
Mus_musculus_69_38   (House mouse)   1
Oryctolagus_cuniculus_69_2   (Rabbit)   1
Canis_familiaris_69_3.1   (Dog)   1
Equus_caballus_69_2   (Horse)   1
Myotis_lucifugus_69_2.0   (Little brown bat)   0
Sorex_araneus_69_1   (European shrew)   0
Erinaceus_europaeus_69   (Western European hedgehog)   1
Loxodonta_africana_69_3   (African savanna elephant)   1
Gallus_gallus_69_2   (Chicken)   0

Others
Genome     Number
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   1
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   0
NCBI_plasmid_sequences_(Plasmids) 4
Protozoadb_2010_08_(Protozoadb) 3
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 1
STRING_v9.0.5_(STRING) 44
Uniprot_2018_03_genome 7464
NCBI_2017_08_genome 850
NCBI_viral_sequences_(Viral) 2
UniProt__viral_sequences_(Viral) 1
Protein_Data_Bank_(all_PDB_sequenc) 0

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