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  Home > SCOP hierarchy > Domain combination - _gap_,51197

Domain combinations for _gap_,51197 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

51197 - Clavaminate synthase-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   16
Pan_troglodytes_76_2.1.4   (Chimpanzee)   7
Gorilla_gorilla_76_3.1   (Western gorilla)   11
Pongo_abelii_76_2   (Sumatran orangutan)   8
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   6
Papio_anubis_76   (Olive baboon)   7
Macaca_mulatta_76_1   (Rhesus monkey)   11
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   11
Otolemur_garnettii_76_3   (Small-eared galago)   6
Microcebus_murinus_76_1   (Gray mouse lemur)   8
Rattus_norvegicus_76_5.0   (Norway rat)   8
Mus_musculus_76_38   (House mouse)   12
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   6
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   5
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   6
Cavia_porcellus_76_3   (Domestic guinea pig)   6
Oryctolagus_cuniculus_76_2   (Rabbit)   7
Ochotona_princeps_76   (American pika)   6
Tupaia_belangeri_76   (Northern tree shrew)   4
Sus_scrofa_76_10.2   (Pig)   8
Bos_taurus_76_3.1   (Cattle)   6
Ovis_aries_76_3.1   (Sheep)   9
Vicugna_pacos_76_1   (Alpaca)   6
Tursiops_truncatus_76_1   (Bottlenose dolphin)   9
Mustela_putorius_furo_76_1.0   (Domestic ferret)   8
Ailuropoda_melanoleuca_76_1   (Giant panda)   6
Canis_familiaris_76_3.1   (Dog)   9
Felis_catus_76_6.2   (Domestic cat)   7
Equus_caballus_76_2   (Horse)   7
Myotis_lucifugus_76_2.0   (Little brown bat)   7
Pteropus_vampyrus_76_1   (Large flying fox)   9
Sorex_araneus_76_1   (European shrew)   3
Erinaceus_europaeus_76   (Western European hedgehog)   8
Procavia_capensis_76_1   (Cape rock hyrax)   5
Loxodonta_africana_76_3   (African savanna elephant)   7
Echinops_telfairi_76   (Small Madagascar hedgehog)   5
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   10
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   7
Macropus_eugenii_76_1.0   (Tammar wallaby)   6
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   7
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   7
Ornithorhynchus_anatinus_76_5   (Platypus)   7
Saccoglossus_kowalevskii_v3.0 27
Petromyzon_marinus_76_7.0   (Sea lamprey)   2
Meleagris_gallopavo_76_2   (Turkey)   2
Gallus_gallus_76_4   (Chicken)   4
Anas_platyrhynchos_76_1.0   (Mallard)   3
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   6
Ficedula_albicollis_76_1.0   (Collared flycatcher)   3
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   8
Anolis_carolinensis_76_2.0   (Green anole)   3
Xenopus_laevis_   (African clawed frog)   6
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   5
Latimeria_chalumnae_76_1   (Coelacanth)   6
Lepisosteus_oculatus_76   (Spotted gar)   3
Gadus_morhua_76_1   (Atlantic cod)   4
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   4
Takifugu_rubripes_76_4   (Torafugu)   3
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   5
Oryzias_latipes_76_1   (Japanese medaka)   9
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   5
Poecilia_formosa_76   (Amazon molly)   7
Oreochromis_niloticus_76_1.0   (Nile tilapia)   6
Astyanax_mexicanus_76   (Mexican tetra)   5
Danio_rerio_76_9   (Zebrafish)   10
Oikopleura_dioica 5
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   6
Ciona_intestinalis_76   (Vase tunicate)   13
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   12
Adineta_vaga 17
Octopus_bimaculoides_280 7
Crassostrea_gigas_22   (Pacific oyster)   7
Lottia_gigantea_   (Owl limpet)   7
Helobdella_robusta_ 5
Capitella_sp._I_ 9
Danaus_plexippus_OGS1.0   (Monarch butterfly)   4
Heliconius_melpomene_   (Postman butterfly)   3
Bombyx_mori_   (Domestic silkworm)   1
Nasonia_vitripennis_   (Jewel wasp)   3
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   1
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   1
Linepithema_humile_v1.1   (Argentine ant)   3
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   3
Solenopsis_invicta_v.2.2.3   (Red fire ant)   2
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   2
Atta_cephalotes_v1.1 4
Camponotus_floridanus_v3.3   (Florida carpenter ant)   3
Lucilia_cuprina   (Australian sheep blowfly)   6
Drosophila_grimshawi_1.3 8
Drosophila_willistoni_1.3 6
Drosophila_pseudoobscura_2.13 7
Drosophila_persimilis_1.3 5
Drosophila_suzukii 4
Drosophila_yakuba_1.3 5
Drosophila_simulans_1.3 4
Drosophila_sechellia_1.3 6
Drosophila_melanogaster_76_5   (Fruit fly)   8
Drosophila_erecta_1.3 4
Drosophila_ananassae_1.3 5
Drosophila_virilis_1.2 7
Drosophila_mojavensis_1.3 7
Megaselia_scalaris_22 1
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   3
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   6
Anopheles_darlingi_22   (American malaria mosquito)   4
Anopheles_gambiae_49_3j   (African malaria mosquito)   4
Tribolium_castaneum_3.0   (Red flour beetle)   4
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   4
Acyrthosiphon_pisum_   (Pea aphid)   1
Rhodnius_prolixus_22 1
Daphnia_pulex_   (Common water flea)   6
Strigamia_maritima_22 8
Sarcoptes_scabiei 1
Tetranychus_urticae_   (Two-spotted spider mite)   3
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   3
Pristionchus_pacificus_ 3
Meloidogyne_incognita_   (Southern root-knot nematode)   3
Meloidogyne_hapla_ 5
Onchocerca_volvulus_22 0
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   3
Caenorhabditis_japonica_ 2
Caenorhabditis_brenneri_ 8
Caenorhabditis_remanei_ 6
Caenorhabditis_elegans_76_235   (Roundworm)   4
Caenorhabditis_briggsae_2 2
Trichinella_spiralis_22 1
Hymenolepis_microstoma_ 3
Echinococcus_multilocularis_ 1
Echinococcus_granulosus_ 1
Taenia_solium_   (Pork tapeworm)   2
Schistosoma_mansoni_ 0
Mnemiopsis_leidyi   (Sea walnut)   15
Thelohanellus_kitauei 1
Acropora_digitifera_v1.0 10
Nematostella_vectensis_1.0   (Starlet sea anemone)   19
Hydra_vulgaris 6
Amphimedon_queenslandica 14
Trichoplax_adhaerens_ 22
Proterospongia_sp._ATCC_50818_ 21
Monosiga_brevicollis_ 14
Sphaeroforma_arctica_JP610_ 6
Capsaspora_owczarzaki_ATCC_30864_ 8
Conidiobolus_coronatus_NRRL28638_v1.0 4
Mortierella_verticillata_NRRL_6337_ 8
Phycomyces_blakesleeanus_ 6
Rhizopus_oryzae_RA_99-880_ 7
Mucor_circinelloides_ 8
Rhizomucor_miehei_CAU432_ 6
Malassezia_globosa_CBS_7966_ 4
Sporisorium_reilianum_22 7
Ustilago_maydis_ 7
Mixia_osmundae_IAM_14324_v1.0 7
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 6
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 6
Melampsora_laricis-populina_ 9
Rhodotorula_graminis_WP1_v1.0 11
Sporobolomyces_roseus_IAM_13481_ 2
Microbotryum_violaceum_22 10
Wallemia_sebi_v1.0 5
Sphaerobolus_stellatus_v1.0 31
Piloderma_croceum_F_1598_v1.0 17
Serpula_lacrymans_var._lacrymans_S7.9_ 8
Coniophora_puteana 11
Hydnomerulius_pinastri_v2.0 12
Paxillus_rubicundulus_Ve08.2h10_v1.0 11
Pisolithus_microcarpus_441_v1.0 6
Pisolithus_tinctorius_Marx_270_v1.0 8
Scleroderma_citrinum_Foug_A_v1.0 8
Coprinopsis_cinerea_okayama7_130_v3 14
Pleurotus_ostreatus_   (Oyster mushroom)   7
Amanita_thiersii_Skay4041_v1.0 5
Amanita_muscaria_Koide_v1.0   (Fly agaric)   14
Galerina_marginata_v1.0 11
Hebeloma_cylindrosporum_h7_v2.0 8
Laccaria_bicolor_S238N-H82_ 12
Agaricus_bisporus_var._bisporus_ 7
Schizophyllum_commune_ 8
Stereum_hirsutum_FP-91666_SS1__v1.0 16
Heterobasidion_annosum_ 8
Gloeophyllum_trabeumv1.0 10
Punctularia_strigosozonata_v1.0 9
Sebacina_vermifera_MAFF_305830_v1.0 7
Fomitiporia_mediterranea_v1.0 11
Tulasnella_calospora_AL13/4D_v1.0 6
Postia_placenta_ 15
Wolfiporia_cocos_MD-104_SS10__v1.0 12
Fomitopsis_pinicolav1.0 10
Fomitopsis_pinicola_FP-58527_SS1_v3.0 12
Phanerochaete_chrysosporium_RP-78_2.1 9
Dichomitus_squalens 9
Trametes_versicolor_v1.0 9
Tremella_mesenterica_   (Witches' butter)   9
Daldinia_eschscholzii_EC12_v1.0 16
Apiospora_montagnei_NRRL_25634_v1.0 24
Magnaporthe_poae_ATCC_64411_22 9
Magnaporthe_grisea_70-15_ 10
Podospora_anserina_ 18
Sporotrichum_thermophile_ATCC_42464_ 12
Thielavia_terrestris_NRRL_8126_ 11
Chaetomium_globosum_CBS_148.51_ 11
Neurospora_tetrasperma_ 9
Neurospora_discreta_FGSC_8579_ 8
Neurospora_crassa_OR74A_ 10
Cryphonectria_parasitica_   (Chestnut blight fungus)   13
Verticillium_albo-atrum_VaMs.102_ 13
Verticillium_dahliae_VdLs.17_ 11
Acremonium_alcalophilumv_1.0 7
Glomerella_graminicola_22 17
Fusarium_graminearum_ 13
Nectria_haematococca_mpVI_ 17
Fusarium_oxysporum_f._sp._lycopersici_4286_ 13
Fusarium_verticillioides_7600_ 10
Trichoderma_asperellum_CBS_433.97_v1.0 15
Trichoderma_atroviride_ 11
Trichoderma_citrinoviride_v1.0 13
Trichoderma_reesei_1.2 11
Trichoderma_virens_Gv29-8_ 9
Trichoderma_longibrachiatum_ATCC_18648_v1.0 12
Trichoderma_harzianum_CBS_226.95_v1.0 11
Amorphotheca_resinae_v1.0   (Creosote fungus)   20
Botrytis_cinerea_B05.10_ 19
Sclerotinia_sclerotiorum_ 16
Blumeria_graminis_22 5
Didymella_exigua_CBS_183.55_v1.0 12
Leptosphaeria_maculans_22 13
Setosphaeria_turcica_v1.0 18
Cochliobolus_miyabeanus_ATCC_44560_v1.0 20
Cochliobolus_victoriae_FI3_v1.0 22
Cochliobolus_carbonum_26-R-13_v1.0 19
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   14
Alternaria_brassicicola_ 11
Cochliobolus_lunatus_m118_v2.0 22
Pyrenophora_teres_f._teres_22 15
Pyrenophora_tritici-repentis_ 16
Stagonospora_nodorum_ 16
Mycosphaerella_graminicola_IPO323_ 4
Zasmidium_cellare_ATCC_36951_v1.0 22
Dothistroma_septosporum 12
Septoria_musiva_v1.0 12
Mycosphaerella_fijiensis_CIRAD86_ 10
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 11
Paracoccidioides_brasiliensis_Pb18_ 5
Coccidioides_posadasii_RMSCC_3488_ 9
Coccidioides_immitis_RS_ 11
Ajellomyces_dermatitidis_SLH14081_ 5
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 3
Microsporum_canis_CBS_113480_ 6
Trichophyton_equinum_CBS_127.97_ 6
Trichophyton_verrucosum_HKI_0517_ 5
Arthroderma_benhamiae_CBS_112371_ 4
Trichophyton_tonsurans_CBS_112818_ 6
Trichophyton_rubrum_CBS_118892_ 5
Uncinocarpus_reesii_1704_ 7
Aspergillus_zonatus_v1.0 8
Penicillium_chrysogenum_Wisconsin_54-1255_ 17
Penicillium_chrysogenum_v1.0 17
Aspergillus_acidus_v1.0 12
Aspergillus_fumigatus_Af293 16
Aspergillus_brasiliensis_v1.0 14
Aspergillus_nidulans_FGSC_A4_ 17
Aspergillus_sydowii_v1.0 15
Aspergillus_versicolor_v1.0 17
Aspergillus_glaucus 16
Aspergillus_carbonarius_ITEM_5010_ 16
Neosartorya_fischeri_NRRL_181_ 13
Aspergillus_terreus_NIH2624_ 12
Aspergillus_tubingensis_v1.0 14
Aspergillus_wentii_v1.0 15
Aspergillus_oryzae_RIB40_ 13
Aspergillus_niger_22 17
Aspergillus_niger_ATCC_1015_ 11
Aspergillus_flavus_NRRL3357_ 13
Aspergillus_clavatus_NRRL_1_ 11
Penicillium_marneffei_ATCC_18224_ 14
Tuber_melanosporum_Mel28_22 10
Tuber_melanosporum_Vittad_   (Perigord truffle)   11
Hansenula_polymorpha_v2.0 5
Dekkera_bruxellensis_CBS_2499_v2.0 5
Pichia_membranifaciensv1.0 11
Candida_tanzawaensis_NRRL_Y-17324__v1.0 8
Candida_dubliniensis_CD36_ 9
Candida_tropicalis_MYA-3404_ 7
Candida_parapsilosis_ 8
Candida_albicans_SC5314 8
Lodderomyces_elongisporus_NRRL_YB-4239_ 9
Babjeviella_inositovora_NRRL_Y-12698_v1.0 15
Pichia_stipitis_CBS_6054_ 14
Candida_guilliermondii_ATCC_6260_ 8
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 10
Debaromyces_hansenii 9
Wickerhamomyces_anomalus 9
Pichia_pastoris_GS115_ 5
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 1
Yarrowia_lipolytica_CLIB122 8
Candida_lusitaniae_ATCC_42720_ 7
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 5
Vanderwaltozyma_polyspora_DSM_70294_ 0
Candida_glabrata_CBS138 1
Kluyveromyces_thermotolerans_CBS_6340 4
Lachancea_kluyveri_ 8
Kluyveromyces_waltii 4
Ashbya_gossypii_ATCC_10895_ 4
Zygosaccharomyces_rouxii_ 4
Saccharomyces_mikatae_MIT 1
Saccharomyces_paradoxus_MIT 3
Saccharomyces_cerevisiae_76   (Baker's yeast)   2
Saccharomyces_bayanus_MIT 2
Kluyveromyces_lactis 4
Schizosaccharomyces_cryophilus_OY26_22 6
Schizosaccharomyces_octosporus_yFS286_ 4
Schizosaccharomyces_japonicus_yFS275_ 2
Schizosaccharomyces_pombe   (Fission yeast)   2
Catenaria_anguillulae_PL171_v1.0 6
Allomyces_macrogynus_ATCC_38327_ 11
Spizellomyces_punctatus_DAOM_BR117_ 9
Dictyostelium_discoideum 8
Dictyostelium_purpureum_ 4
Selaginella_moellendorffii_ 7
Pinus_taeda   (Loblolly pine)   10
Picea_abies   (Norway spruce)   14
Eucalyptus_grandis_v201   (Rose gum)   10
Theobroma_cacao_B97-61/B2_v1   (Cacao)   8
Gossypium_raimondii_v221 33
Citrus_clementina_v165 15
Citrus_sinensis_v154   (Sweet orange)   21
Thellungiella_halophila_v173 13
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   13
Capsella_rubella_v183 10
Arabidopsis_lyrata_   (Lyrate rockcress)   7
Arabidopsis_thaliana_10   (Thale cress)   20
Carica_papaya_   (Papaya)   5
Medicago_truncatula_   (Barrel medic)   10
Phaseolus_vulgaris_v186   (French bean)   16
Glycine_max_v109   (Soybean)   16
Cucumis_sativus_v122   (Cucumber)   12
Fragaria_vesca_   (Wild strawberry)   13
Malus_domestica_v196   (Apple)   27
Prunus_persica_v139   (Peach)   7
Linum_usitatissimum_v200   (Flax)   18
Manihot_esculenta_v147   (Cassava)   10
Populus_trichocarpa_v156   (Black cottonwood)   10
Vitis_vinifera_   (Wine grape)   16
Mimulus_guttatus_v140   (Spotted monkey flower)   11
Solanum_lycopersicum_v.2.3   (Tomato)   10
Solanum_tuberosum_   (Potato)   10
Actinidia_chinensis_Hongyang_ 20
Aquilegia_coerulea_v195 15
Triticum_urartu_22 11
Triticum_aestivum_22   (Bread wheat)   19
Aegilops_tauschii_22 10
Brachypodium_distachyon_   (Stiff brome)   10
Oryza_barthii_22   (African wild rice)   6
Oryza_meridionalis_22 6
Oryza_glumaepatula_22 13
Oryza_glaberrima   (African rice)   12
Oryza_punctata_22 11
Oryza_nivara_22 18
Oryza_brachyantha_22   (Malo sina)   3
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   17
Oryza_sativa_v193   (Rice)   17
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   9
Panicum_virgatum_v202   (Switchgrass)   27
Setaria_italica_v164   (Foxtail millet)   19
Zea_mays_subsp._mays_   (Maize)   17
Zea_mays_v181   (Maize)   19
Sorghum_bicolor_   (Sorghum)   9
Musa_balbisiana   (Balbis banana)   14
Musa_acuminata_22   (Wild Malaysian banana)   14
Amborella_trichopoda_22 4
Physcomitrella_patens 7
Coccomyxa_subellipsoidea_sp._C-169_v2 7
Asterochloris_sp._Cgr/DA1pho_v1.0 1
Chlorella_variabilis_sp._NC64A_ 11
Chlorella_vulgaris_ 6
Volvox_carteri_f._nagariensis_ 6
Volvox_carteri_v199 6
Chlamydomonas_reinhardtii_4.0 5
Ostreococcus_sp._RCC809_ 8
Ostreococcus_lucimarinus_CCE9901_ 11
Ostreococcus_tauri_ 15
Bathycoccus_prasinos_ 20
Micromonas_sp._RCC299_ 24
Micromonas_pusilla_CCMP1545_v3.0 27
Cyanidioschyzon_merolae_strain_10D_22 1
Cyanidioschyzon_merolae 1
Porphyridium_purpureum_02_2012 8
Thecamonas_trahens_ATCC_50062_ 12
Bigelowiella_natans_CCMP2755_22 46
Cyanophora_paradoxa_ 6
Leishmania_mexicana_2.4 3
Leishmania_major_strain_Friedlin_ 2
Leishmania_infantum_JPCM5_2.4 3
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 3
Trypanosoma_vivax_ 4
Trypanosoma_cruzi_strain_CL_Brener 5
Trypanosoma_congolense_2.4 5
Trypanosoma_brucei_gambiense_v4.1 4
Trypanosoma_brucei_TREU927_v4.1 4
Ectocarpus_siliculosus 14
Aureococcus_anophagefferens_ 27
Albugo_laibachii_22 9
Pythium_iwayamai_DAOM_BR242034_22 15
Pythium_arrhenomanes_ATCC_12531_22 14
Pythium_ultimum_v1.7-2 15
Pythium_aphanidermatum_DAOM_BR444_22 10
Pythium_irregulare_DAOM_BR486_22 15
Pythium_vexans_DAOM_BR484_22 10
Phytophthora_ramorum_1.1   (Sudden oak death agent)   17
Phytophthora_sojae_1.1 11
Phytophthora_infestans_T30-4_ 10
Phytophthora_capsici_ 12
Hyaloperonospora_arabidopsidis_22 7
Phaeodactylum_tricornutumCCAP_1055/1 28
Fragilariopsis_cylindrus 34
Thalassiosira_pseudonana_CCMP1335 27
Perkinsus_marinus_ATCC_50983_ 4
Paramecium_tetraurelia_ 2
Tetrahymena_thermophila_SB210_1_ 9
Ichthyophthirius_multifiliis_strain_G5_ 5
Neospora_caninum 2
Toxoplasma_gondii_VEG 2
Toxoplasma_gondii_ME49 2
Toxoplasma_gondii_GT1 2
Babesia_bovis_T2Bo_ 2
Theileria_annulata 1
Plasmodium_falciparum_3D7_ 1
Plasmodium_vivax_SaI-1_7.0 1
Plasmodium_knowlesi_strain_H_ 1
Plasmodium_yoelii_ssp._yoelii_1_ 2
Plasmodium_chabaudi_ 1
Plasmodium_berghei_ANKA_ 1
Symbiodinium_minutum_clade_B1_v1.2 67
Naegleria_gruberi_ 11
Guillardia_theta_CCMP2712_v1.0_ 29
Emiliania_huxleyi_CCMP1516_ 84
Leptolyngbya_sp._PCC_7376 2
Pseudanabaena_sp._PCC_7367 2
Acaryochloris_marina_MBIC11017 3
Synechococcus_sp._PCC_7502 1
Microcoleus_sp._PCC_7113 2
Gloeocapsa_sp._PCC_7428 1
Halothece_sp._PCC_7418 1
Gloeobacter_violaceus_PCC_7421 1
Rivularia_sp._PCC_7116 4
Anabaena_variabilis_ATCC_29413 1
Nostoc_sp._PCC_7120 1
Acidothermus_cellulolyticus_11B 1
Geodermatophilus_obscurus_DSM_43160 1
Kineococcus_radiotolerans_SRS30216 1
Frankia_symbiont_of_Datisca_glomerata 1
Frankia_sp._EAN1pec 2
Kitasatospora_setae_KM-6054 0
Streptomyces_bingchenggensis_BCW-1 1
Streptomyces_violaceusniger_Tu_4113 1
Streptomyces_avermitilis_MA-4680 1
Streptomyces_scabiei_87.22 1
Actinosynnema_mirum_DSM_43827 2
Saccharopolyspora_erythraea_NRRL_2338 1
Microlunatus_phosphovorus_NM-1 0
Actinoplanes_sp._N902-109 1
Gordonia_polyisoprenivorans_VH2 1
Gordonia_bronchialis_DSM_43247 1
Rhodococcus_jostii_RHA1 1
Rhodococcus_opacus_B4 1
Rhodococcus_erythropolis_PR4 1
Mycobacterium_vanbaalenii_PYR-1 1
Mycobacterium_canettii_CIPT_140010059 0
Mycobacterium_africanum_GM041182 0
Mycobacterium_tuberculosis_KZN_1435 0
Mycobacterium_tuberculosis 0
Mycobacterium_bovis_BCG_str._Pasteur_1173P2 0
Mycobacterium_rhodesiae_NBB3 1
Mycobacterium_ulcerans_Agy99 0
Mycobacterium_chubuense_NBB4 1
Mycobacterium_marinum_M 0
Mycobacterium_smegmatis_str._MC2_155 1
Solitalea_canadensis_DSM_3403 1
Fluviicola_taffensis_DSM_16823 1
Lacinutrix_sp._5H-3-7-4 1
Cellulophaga_lytica_DSM_7489 1
Flavobacterium_indicum_GPTSA100-9 1
Flavobacterium_johnsoniae_UW101 1
Waddlia_chondrophila_WSU_86-1044 1
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Paris)' 1
Candidatus_Koribacter_versatilis_Ellin345 1
Haliangium_ochraceum_DSM_14365 1
Sorangium_cellulosum_'So_ce_56' 2
Stigmatella_aurantiaca_DW4/3-1 2
Corallococcus_coralloides_DSM_2259 3
Myxococcus_xanthus_DK_1622 1
Myxococcus_fulvus_HW-1 1
Methylibium_petroleiphilum_PM1 1
Burkholderia_rhizoxinica_HKI_454 2
Burkholderia_phytofirmans_PsJN 2
Burkholderia_phymatum_STM815 2
Burkholderia_xenovorans_LB400 1
Ralstonia_pickettii_12D 1
Burkholderia_thailandensis_E264 2
Burkholderia_pseudomallei_1106a 1
Burkholderia_mallei_SAVP1 1
Burkholderia_ambifaria_AMMD 1
Burkholderia_cenocepacia_HI2424 1
Burkholderia_vietnamiensis_G4 1
Burkholderia_gladioli_BSR3 2
Burkholderia_glumae_BGR1 1
Verminephrobacter_eiseniae_EF01-2 1
Acidovorax_avenae_subsp._avenae_ATCC_19860 1
Collimonas_fungivorans_Ter331 2
Bordetella_avium_197N 1
Nitrosospira_multiformis_ATCC_25196 1
Asticcacaulis_excentricus_CB_48 2
Caulobacter_crescentus_NA1000 1
Phenylobacterium_zucineum_HLK1 2
Sphingopyxis_alaskensis_RB2256 1
Novosphingobium_sp._PP1Y 1
Sphingobium_sp._SYK-6 1
Sphingobium_chlorophenolicum_L-1 1
Sphingomonas_sp._MM-1 1
Sphingomonas_wittichii_RW1 0
Hirschia_baltica_ATCC_49814 1
Phaeobacter_gallaeciensis_2.10 2
Ruegeria_sp._TM1040 4
Ruegeria_pomeroyi_DSS-3 1
Roseobacter_litoralis_Och_149 1
Roseobacter_denitrificans_OCh_114 1
Azospirillum_lipoferum_4B 3
Azospirillum_sp._B510 2
Gluconacetobacter_diazotrophicus_PAl_5 2
Acetobacter_pasteurianus_IFO_3283-01 1
alpha_proteobacterium_HIMB59 1
Brucella_microti_CCM_4915 1
Sinorhizobium_fredii_NGR234 1
Sinorhizobium_medicae_WSM419 1
Sinorhizobium_meliloti_AK83 1
Rhizobium_etli_CIAT_652 1
Rhizobium_leguminosarum_bv._viciae_3841 1
Agrobacterium_radiobacter_K84 2
Agrobacterium_vitis_S4 2
Mesorhizobium_opportunistum_WSM2075 1
Mesorhizobium_ciceri_biovar_biserrulae_WSM1271 2
Mesorhizobium_loti_MAFF303099 3
Rhodopseudomonas_palustris_BisA53 1
Nitrobacter_winogradskyi_Nb-255 1
Cellvibrio_japonicus_Ueda107 0
Aeromonas_hydrophila_subsp._hydrophila_ATCC_7966 0
Vibrio_anguillarum_775 1
Vibrio_cholerae_O395 1
Shewanella_piezotolerans_WP3 0
Shewanella_pealeana_ATCC_700345 1
Shewanella_oneidensis_MR-1 0
Shewanella_baltica_OS185 0
Shewanella_woodyi_ATCC_51908 1
Shewanella_putrefaciens_CN-32 1
Pseudoalteromonas_atlantica_T6c 2
Glaciecola_sp._4H-3-7+YE-5 3
Marinobacter_adhaerens_HP15 1
Alteromonas_sp._SN2 4
Alteromonas_macleodii_str._'Deep_ecotype' 1
Hahella_chejuensis_KCTC_2396 1
Marinomonas_mediterranea_MMB-1 2
Chromohalobacter_salexigens_DSM_3043 4
Halomonas_elongata_DSM_2581 3
Pseudoxanthomonas_suwonensis_11-1 0
Halothiobacillus_neapolitanus_c2 1
Photorhabdus_asymbiotica 1
Xenorhabdus_bovienii_SS-2004 1
Xenorhabdus_nematophila_ATCC_19061 1
Rahnella_sp._Y9602 0
Serratia_sp._ATCC_39006 1
Dickeya_zeae_Ech1591 1
Pantoea_sp._At-9b 1
Pantoea_vagans_C9-1 0
Pantoea_ananatis_LMG_20103 0
Erwinia_pyrifoliae_Ep1/96 1
Enterobacteriaceae_bacterium_strain_FGI_57 0
Shigella_sonnei_Ss046 0
Shigella_flexneri_5_str._8401 0
Shigella_dysenteriae_Sd197 0
Shigella_boydii_CDC_3083-94 0
Salmonella_bongori_NCTC_12419 0
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_C_strain_RKS4594 0
Klebsiella_oxytoca_E718 0
Klebsiella_variicola_At-22 0
Klebsiella_pneumoniae_NTUH-K2044 0
Enterobacter_aerogenes_KCTC_2190 0
Escherichia_coli_'BL21-Gold(DE3)pLysS_AG' 0
Enterobacter_sp._R4-368 0
Enterobacter_sp._638 0
Enterobacter_asburiae_LF7a 0
Enterobacter_cloacae_subsp._dissolvens_SDM 0
Citrobacter_rodentium_ICC168 0
Citrobacter_koseri_ATCC_BAA-895 0
Pseudomonas_sp._TKP 1
Pseudomonas_sp._UW4 1
Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421 1
Pseudomonas_entomophila_L48 1
Pseudomonas_protegens_Pf-5 1
Pseudomonas_fluorescens_SBW25 1
Pseudomonas_mendocina_ymp 1
Pseudomonas_sp._VLB120 1
Psychrobacter_sp._PRwf-1 1
Moraxella_catarrhalis_RH4 1
Acinetobacter_oleivorans_DR1 1
Acinetobacter_calcoaceticus_PHEA-2 1

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   10
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   6
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   5
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   2
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   3
Cryptococcus_neoformans_var._grubii_H99_ 12
Cryptococcus_neoformans_B-3501A_ 14
Cryptococcus_neoformans_JEC21_ 10
Paracoccidioides_brasiliensis_Pb01_ 4
Paracoccidioides_brasiliensis_Pb03_ 2
Coccidioides_posadasii_str._Silveira_ 9
Coccidioides_immitis_RMSCC_3703_ 10
Coccidioides_immitis_RMSCC_2394_ 12
Coccidioides_immitis_H538.4_ 11
Ajellomyces_dermatitidis_ER-3_ 5
Histoplasma_capsulatum_H143 5
Histoplasma_capsulatum_H88 6
Histoplasma_capsulatum_G186AR 3
Aspergillus_fumigatus_A1163_ 15
Candida_albicans_WO-1_ 9
Saccharomyces_cerevisiae_UC5 2
Saccharomyces_cerevisiae_PW5 2
Saccharomyces_cerevisiae_FL100 1
Saccharomyces_cerevisiae_CLIB382 1
Saccharomyces_cerevisiae_CLIB324 1
Saccharomyces_cerevisiae_CBS7960 2
Saccharomyces_cerevisiae_YJM269 2
Saccharomyces_cerevisiae_T7 2
Saccharomyces_cerevisiae_FostersB 2
Saccharomyces_cerevisiae_FostersO 2
Saccharomyces_cerevisiae_VL3 2
Saccharomyces_cerevisiae_Vin13 1
Saccharomyces_cerevisiae_LalvinQA23 1
Saccharomyces_cerevisiae_AWRI796 2
Saccharomyces_cerevisiae_Sigma1278b 2
Saccharomyces_cerevisiae_W303 2
Saccharomyces_cerevisiae_JAY291 2
Saccharomyces_cerevisiae_AWRI1631 1
Saccharomyces_cerevisiae_YPS163 1
Saccharomyces_cerevisiae_T73 1
Saccharomyces_cerevisiae_CLIB215 0
Saccharomyces_cerevisiae_Y10 2
Saccharomyces_cerevisiae_YJM789_ 2
Saccharomyces_cerevisiae_YJM789 2
Saccharomyces_cerevisiae_RM11-1a 2
Saccharomyces_cerevisiae_RM11-1a_ 2
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   2
Schizosaccharomyces_pombe_972h-_ 2
Batrachochytrium_dendrobatidis_JEL423_ 8
Batrachochytrium_dendrobatidis_JAM81_ 7
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   11
Hordeum_vulgare_22   (Domesticated barley)   20
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   10
Trypanosoma_brucei_Lister_427_v4.1 4
Neospora_caninum_Nc-Liverpool_6.2 2
Plasmodium_falciparum_HB3_ 1
Plasmodium_falciparum_Dd2_ 0
Chroococcidiopsis_thermalis_PCC_7203 3
Chamaesiphon_minutus_PCC_6605 1
Synechococcus_sp._CC9902 1
Synechococcus_sp._WH_8102 1
Prochlorococcus_marinus_str._MIT_9303 1
Oscillatoria_nigro-viridis_PCC_7112 1
Oscillatoria_acuminata_PCC_6304 2
Arthrospira_platensis_NIES-39 1
Cyanothece_sp._PCC_7425 1
Calothrix_parietina_Calothrix_sp._PCC_6303 2
Cylindrospermum_stagnale_PCC_7417 1
Frankia_sp._EuI1c 2
Streptomyces_rapamycinicus_NRRL_5491 1
Streptomyces_collinus_Tu_365 1
Rhodococcus_erythropolis_CCM2595 1
Mycobacterium_liflandii_128FXT 0
Mycobacterium_canettii_CIPT_140070017 0
Mycobacterium_canettii_CIPT_140060008 0
Mycobacterium_canettii_CIPT_140070008 0
Mycobacterium_canettii_CIPT_140070010 0
Mycobacterium_tuberculosis_EAI5/NITR206 0
Mycobacterium_tuberculosis_EAI5 0
Mycobacterium_tuberculosis_CAS/NITR204 0
Mycobacterium_tuberculosis_str._Beijing/NITR203 0
Mycobacterium_tuberculosis_UT205 0
Mycobacterium_tuberculosis_RGTB423 0
Mycobacterium_tuberculosis_RGTB327 0
Mycobacterium_tuberculosis_CTRI-2 0
Mycobacterium_tuberculosis_str._Erdman_=_ATCC_35801 0
Mycobacterium_tuberculosis_KZN_605 0
Mycobacterium_tuberculosis_KZN_4207 0
Mycobacterium_tuberculosis_CCDC5180 0
Mycobacterium_tuberculosis_CCDC5079 0
Mycobacterium_tuberculosis_CCDC5079 0
Mycobacterium_tuberculosis_H37Ra 0
Mycobacterium_tuberculosis_str._Haarlem/NITR202 0
Mycobacterium_tuberculosis_str._Haarlem 0
Mycobacterium_tuberculosis_F11 0
Mycobacterium_tuberculosis_H37Rv 0
Mycobacterium_tuberculosis_CDC1551 0
Mycobacterium_bovis_AF2122/97 0
Mycobacterium_bovis_BCG_str._Korea_1168P 0
Mycobacterium_bovis_BCG_str._Mexico 0
Mycobacterium_bovis_BCG_str._Tokyo_172 0
Mycobacterium_smegmatis_str._MC2_155 1
Mycobacterium_kansasii_ATCC_12478 2
Echinicola_vietnamensis_DSM_17526 1
Singulisphaera_acidiphila_DSM_18658 1
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Ames)' 1
Sorangium_cellulosum_So0157-2 3
Myxococcus_stipitatus_DSM_14675 4
Pandoraea_pnomenusa_3kgm 1
Ralstonia_solanacearum_PSI07 2
Ralstonia_solanacearum_CMR15 1
Burkholderia_sp._YI23 1
Burkholderia_sp._KJ006 1
Burkholderia_thailandensis_MSMB121 1
Burkholderia_pseudomallei_MSHR305 1
Burkholderia_pseudomallei_NCTC_13179 2
Burkholderia_pseudomallei_BPC006 1
Burkholderia_pseudomallei_1026b 1
Burkholderia_pseudomallei_668 1
Burkholderia_pseudomallei_1710b 4
Burkholderia_pseudomallei_K96243 1
Burkholderia_mallei_NCTC_10229 1
Burkholderia_mallei_ATCC_23344 1
Burkholderia_lata 1
Burkholderia_ambifaria_MC40-6 1
Burkholderia_cenocepacia_MC0-3 1
Burkholderia_cenocepacia_AU_1054 1
Burkholderia_cenocepacia_J2315 1
Burkholderia_cepacia_GG4 2
Phaeobacter_gallaeciensis_DSM_17395 2
Phaeobacter_gallaeciensis_DSM_26640 3
Leisingera_methylohalidivorans_DSM_14336 1
Octadecabacter_antarcticus_307 2
Octadecabacter_arcticus_238 2
Gluconacetobacter_diazotrophicus_PAl_5 2
Gluconobacter_oxydans_H24 1
Acetobacter_pasteurianus_IFO_3283-12 1
Acetobacter_pasteurianus_IFO_3283-01-42C 1
Acetobacter_pasteurianus_IFO_3283-32 1
Acetobacter_pasteurianus_IFO_3283-26 1
Acetobacter_pasteurianus_IFO_3283-22 1
Acetobacter_pasteurianus_IFO_3283-07 1
Acetobacter_pasteurianus_IFO_3283-03 1
Brucella_canis_HSK_A52141 1
Brucella_melitensis_M28 1
Brucella_abortus_A13334 1
Sinorhizobium_meliloti_2011 1
Sinorhizobium_meliloti_GR4 1
Sinorhizobium_meliloti_Rm41 1
Sinorhizobium_meliloti_SM11 2
Sinorhizobium_meliloti_BL225C 1
Sinorhizobium_meliloti_1021 1
Rhizobium_etli_CFN_42 1
Rhizobium_etli_bv._mimosae_str._Mim1 1
Rhizobium_tropici_CIAT_899 2
Rhizobium_leguminosarum_bv._trifolii_WSM2304 1
Rhizobium_leguminosarum_bv._trifolii_WSM1325 1
Mesorhizobium_australicum_WSM2073 1
Rhodopseudomonas_palustris_TIE-1 1
Rhodopseudomonas_palustris_HaA2 1
Rhodopseudomonas_palustris_BisB5 1
Rhodopseudomonas_palustris_BisB18 1
Rhodopseudomonas_palustris_CGA009 1
Simiduia_agarivorans_SA1_=_DSM_21679 1
Vibrio_anguillarum_Listonella_anguillarum_M3 1
Vibrio_nigripulchritudo_VibrioScope 1
Vibrio_cholerae_LMA3984-4 1
Vibrio_cholerae_M66-2 1
Vibrio_cholerae_O395 1
Vibrio_cholerae_IEC224 1
Vibrio_cholerae_O1_str._2010EL-1786 1
Vibrio_cholerae_MJ-1236 1
Vibrio_cholerae_O1_biovar_El_Tor_str._N16961 1
Shewanella_sp._W3-18-1 1
Shewanella_sp._ANA-3 0
Shewanella_baltica_BA175 0
Shewanella_baltica_OS678 0
Shewanella_baltica_OS117 0
Shewanella_baltica_OS195 0
Shewanella_baltica_OS155 0
Shewanella_putrefaciens_200 1
Alteromonas_macleodii_str._'Ionian_Sea_UM4b' 1
Alteromonas_macleodii_str._'Ionian_Sea_UM7' 1
Alteromonas_macleodii_str._'Ionian_Sea_U8' 1
Alteromonas_macleodii_str._'Ionian_Sea_U7' 1
Alteromonas_macleodii_str._'Ionian_Sea_U4' 1
Alteromonas_macleodii_str._'Aegean_Sea_MED64' 1
Alteromonas_macleodii_str._'English_Channel_615' 1
Alteromonas_macleodii_AltDE1 1
Alteromonas_macleodii_str._'English_Channel_673' 1
Alteromonas_macleodii_str._'Black_Sea_11' 1
Xanthomonas_oryzae_pv._oryzae_KACC_10331 1
Thioflavicoccus_mobilis_8321 1
Rahnella_aquatilis_HX2 0
Yersinia_enterocolitica_subsp._palearctica_105.5R(r) 0
Yersinia_enterocolitica_subsp._palearctica_Y11 0
Dickeya_dadantii_3937 2
Pantoea_ananatis_LMG_5342 0
Pantoea_ananatis_PA13 0
Pantoea_ananatis_AJ13355 0
Erwinia_pyrifoliae_DSM_12163 1
Raoultella_ornithinolytica_B6 0
Shigella_sonnei_53G 0
Shigella_flexneri_2002017 0
Shigella_flexneri_2a_str._2457T 0
Shigella_flexneri_2a_str._301 0
Shigella_boydii_Sb227 0
Salmonella_bongori_N268-08 0
Salmonella_enterica_subsp._arizonae_serovar_62:z4,z23:--_str._RSK2980 0
Salmonella_enterica_subsp._enterica_serovar_4,[5],12:i:-_str._08-1736 0
Salmonella_enterica_subsp._enterica_serovar_Javiana_str._CFSAN001992 0
Salmonella_enterica_subsp._enterica_serovar_Schwarzengrund_str._CVM19633 0
Salmonella_enterica_subsp._enterica_Serovar_Cubana_str._CFSAN002050 0
Salmonella_enterica_subsp._enterica_serovar_Enteritidis_str._P125109 0
Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67 0
Salmonella_enterica_subsp._enterica_serovar_Newport_str._USMARC-S3124.1 0
Salmonella_enterica_subsp._enterica_serovar_Newport_str._SL254 0
Salmonella_enterica_subsp._enterica_serovar_Dublin_str._CT_02021853 0
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_var._5-_str._CFSAN001921 0
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._U288 0
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._798 0
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._UK-1 0
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._ST4/74 0
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._T000240 0
Salmonella_enterica_The_genome_of__subsp._enterica_serovar_Typhimurium_str._DT2 0
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._D23580 0
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._SL1344 0
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._14028S 0
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._LT2 0
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_Definitive_Type_104 0
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._P-stx-12 0
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty21a 0
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18 0
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2 0
Salmonella_enterica_serovar_Bovismorbificans_genomics 0
Salmonella_enterica_subsp._enterica_serovar_Bareilly_str._CFSAN000189 0
Salmonella_enterica_subsp._enterica_serovar_Agona_str._24249 0
Salmonella_enterica_subsp._enterica_serovar_Agona_str._SL483 0
Salmonella_enterica_subsp._enterica_serovar_Weltevreden_str._2007-60-3289-1 0
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_B_str._SPB7 0
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_A_str._AKU_12601 0
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_A_str._ATCC_9150 0
Salmonella_enterica_subsp._enterica_Serovar_Heidelberg_str._CFSAN002069 0
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._B182 0
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._41578 0
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._SL476 0
Salmonella_enterica_subsp._enterica_serovar_Pullorum_str._S06004 0
Salmonella_enterica_subsp._enterica_serovar_Gallinarum/pullorum_str._CDC1983-67 0
Salmonella_enterica_subsp._enterica_serovar_Gallinarum/pullorum_str._RKS5078 0
Salmonella_enterica_subsp._enterica_serovar_Thompson_str._RM6836 0
Salmonella_enterica_subsp._enterica_serovar_Gallinarum_str._287/91 0
Klebsiella_oxytoca_KCTC_1686 0
Klebsiella_pneumoniae_JM45 0
Klebsiella_pneumoniae_CG43 0
Klebsiella_pneumoniae_KCTC_2242 0
Klebsiella_pneumoniae_342 0
Klebsiella_pneumoniae_subsp._pneumoniae_1084 0
Klebsiella_pneumoniae_subsp._pneumoniae_HS11286 0
Klebsiella_pneumoniae_subsp._pneumoniae_MGH_78578 0
Klebsiella_pneumoniae_subsp._rhinoscleromatis_SB3432 0
Enterobacter_aerogenes_EA1509E 0
Escherichia_coli_E24377A 0
Escherichia_coli_LY180 0
Escherichia_coli_APEC_O78 0
Escherichia_coli_O7:K1_str._CE10 0
Escherichia_coli_O104:H4_str._2009EL-2050 0
Escherichia_coli_O104:H4_str._2009EL-2071 0
Escherichia_coli_O104:H4_str._2011C-3493 0
Escherichia_coli_P12b 0
Escherichia_coli_042 0
Escherichia_coli_Xuzhou21 0
Escherichia_coli_UMNK88 0
Escherichia_coli_KO11FL 0
Escherichia_coli_KO11FL 0
Escherichia_coli_IAI39 0
Escherichia_coli_UMN026 0
Escherichia_coli_55989 0
Escherichia_coli_IAI1 0
Escherichia_coli_W 0
Escherichia_coli_W 0
Escherichia_coli_DH1 0
Escherichia_coli_DH1 0
Escherichia_coli_BL21(DE3) 0
Escherichia_coli_BL21(DE3) 0
Escherichia_coli_SMS-3-5 0
Escherichia_coli_SE11 0
Escherichia_coli_O103:H2_str._12009 0
Escherichia_coli_HS 0
Escherichia_coli_ETEC_H10407 0
Escherichia_coli_O55:H7_str._RM12579 0
Escherichia_coli_O55:H7_str._CB9615 0
Escherichia_coli_O26:H11_str._11368 0
Escherichia_coli_O111:H-_str._11128 0
Escherichia_coli_O157:H7_str._TW14359 0
Escherichia_coli_O157:H7_str._EC4115 0
Escherichia_coli_O157:H7_str._Sakai 0
Escherichia_coli_O157:H7_str._EDL933 0
Escherichia_coli_str._K-12_substr._MDS42 0
Escherichia_coli_BW2952 0
Escherichia_coli_str._K-12_substr._MG1655 0
Escherichia_coli_str._K-12_substr._W3110 0
Escherichia_coli_str._K-12_substr._DH10B 0
Escherichia_coli_B_str._REL606 0
Enterobacter_cloacae_SCF1 0
Enterobacter_cloacae_EcWSU1 0
Enterobacter_cloacae_subsp._cloacae_ENHKU01 0
Enterobacter_cloacae_subsp._cloacae_NCTC_9394 0
Enterobacter_cloacae_subsp._cloacae_ATCC_13047 0
Pseudomonas_protegens_CHA0 1
Pseudomonas_fluorescens_F113 1
Pseudomonas_fluorescens_R124 0
Pseudomonas_fluorescens_Pf0-1 1
Pseudomonas_mendocina_NK-01 1
Acinetobacter_sp.__SH024 1
Acinetobacter_calcoaceticus_ruh2202 1

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   8
Pan_troglodytes_69_2.1.4   (Chimpanzee)   7
Gorilla_gorilla_69_3.1   (Western gorilla)   9
Pongo_abelii_69_2   (Sumatran orangutan)   7
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   7
Macaca_mulatta_69_1   (Rhesus monkey)   8
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   7
Otolemur_garnettii_69_3   (Small-eared galago)   6
Microcebus_murinus_69_1   (Gray mouse lemur)   8
Rattus_norvegicus_69_3.4   (Norway rat)   7
Mus_musculus_69_38   (House mouse)   8
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   6
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   5
Cavia_porcellus_69_3   (Domestic guinea pig)   6
Oryctolagus_cuniculus_69_2   (Rabbit)   7
Ochotona_princeps_69   (American pika)   6
Tupaia_belangeri_69   (Northern tree shrew)   4
Sus_scrofa_69_10.2   (Pig)   8
Bos_taurus_69_3.1   (Cattle)   6
Vicugna_pacos_69_1   (Alpaca)   6
Tursiops_truncatus_69_1   (Bottlenose dolphin)   9
Mustela_putorius_furo_69_1.0   (Domestic ferret)   8
Ailuropoda_melanoleuca_69_1   (Giant panda)   6
Canis_familiaris_69_3.1   (Dog)   8
Felis_catus_69   (Domestic cat)   8
Equus_caballus_69_2   (Horse)   7
Myotis_lucifugus_69_2.0   (Little brown bat)   7
Pteropus_vampyrus_69_1   (Large flying fox)   9
Sorex_araneus_69_1   (European shrew)   3
Erinaceus_europaeus_69   (Western European hedgehog)   8
Procavia_capensis_69_1   (Cape rock hyrax)   5
Loxodonta_africana_69_3   (African savanna elephant)   7
Echinops_telfairi_69   (Small Madagascar hedgehog)   5
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   5
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   7
Macropus_eugenii_69_1.0   (Tammar wallaby)   6
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   7
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   7
Ornithorhynchus_anatinus_69_5   (Platypus)   6
Petromyzon_marinus_69_7.0   (Sea lamprey)   2
Meleagris_gallopavo_69_2   (Turkey)   2
Gallus_gallus_69_2   (Chicken)   4
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   5
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   6
Anolis_carolinensis_69_2.0   (Green anole)   3
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   5
Latimeria_chalumnae_69_1   (Coelacanth)   6
Gadus_morhua_69_1   (Atlantic cod)   4
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   4
Takifugu_rubripes_69_4   (Torafugu)   3
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   5
Oryzias_latipes_69_1   (Japanese medaka)   5
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   5
Oreochromis_niloticus_69_1.0   (Nile tilapia)   5
Danio_rerio_69_9   (Zebrafish)   5
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   4
Ciona_intestinalis_69   (Vase tunicate)   13
Drosophila_melanogaster_69_5   (Fruit fly)   6
Caenorhabditis_elegans_69_215   (Roundworm)   3
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   2
Arabidopsis_thaliana_10   (Thale cress)   11

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   19
Homo_sapiens__(NCBI_version)   (Human)   10
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   8
Heliconius_numata__(Incomplete) 0
Loa_loa_v3.3_(Request)   (Eye worm)   1
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   1
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   1
Moniliophthora_perniciosa_FA553__(Genome_survey) 3
Lotus_japonicus__(Early_assembly) 9
Malus_x_domestica_(Duplicate)   (Apple)   27
Ricinus_communis__(Early_assembly)   (Castor bean)   7
Nicotiana_benthamiana_0.4.4_(Early_draft) 16
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   10
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   10
Phoenix_dactylifera__(Early_draft)   (Date palm)   2
Mycobacterium_tuberculosis_H37Rv_(Duplicate_of_ex) 0
NCBI_plasmid_sequences_(Plasmids) 17
Protozoadb_2010_08_(Protozoadb) 40
UniProt__viral_sequences_(Viral) 3
Protein_Data_Bank_(all_PDB_sequenc) 380
STRING_v9.0.5_(STRING) 1072
Uniprot_2018_03_genome 51591
PDB_chains_(SCOP_1.75)_(PDB) 0
NCBI_2017_08_genome 15324
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 1
NCBI_viral_sequences_(Viral) 7
TargetDB__(Targets) 48

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.