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Domain combinations for _gap_,51366 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

51366 - Ribulose-phoshate binding barrel

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Macaca_mulatta_76_1   (Rhesus monkey)   1
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   1
Adineta_vaga 0
Octopus_bimaculoides_280 0
Drosophila_suzukii 1
Caenorhabditis_remanei_ 1
Nematostella_vectensis_1.0   (Starlet sea anemone)   1
Amphimedon_queenslandica 1
Proterospongia_sp._ATCC_50818_ 0
Monosiga_brevicollis_ 1
Sphaeroforma_arctica_JP610_ 0
Capsaspora_owczarzaki_ATCC_30864_ 2
Mortierella_verticillata_NRRL_6337_ 0
Malassezia_globosa_CBS_7966_ 2
Sporisorium_reilianum_22 1
Ustilago_maydis_ 1
Mixia_osmundae_IAM_14324_v1.0 1
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 1
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 1
Melampsora_laricis-populina_ 1
Rhodotorula_graminis_WP1_v1.0 0
Microbotryum_violaceum_22 1
Wallemia_sebi_v1.0 0
Piloderma_croceum_F_1598_v1.0 1
Serpula_lacrymans_var._lacrymans_S7.9_ 1
Coniophora_puteana 1
Hydnomerulius_pinastri_v2.0 1
Paxillus_rubicundulus_Ve08.2h10_v1.0 1
Pisolithus_microcarpus_441_v1.0 1
Scleroderma_citrinum_Foug_A_v1.0 1
Coprinopsis_cinerea_okayama7_130_v3 1
Pleurotus_ostreatus_   (Oyster mushroom)   1
Amanita_thiersii_Skay4041_v1.0 1
Amanita_muscaria_Koide_v1.0   (Fly agaric)   1
Galerina_marginata_v1.0 1
Laccaria_bicolor_S238N-H82_ 1
Agaricus_bisporus_var._bisporus_ 1
Schizophyllum_commune_ 2
Stereum_hirsutum_FP-91666_SS1__v1.0 1
Heterobasidion_annosum_ 1
Gloeophyllum_trabeumv1.0 1
Punctularia_strigosozonata_v1.0 1
Sebacina_vermifera_MAFF_305830_v1.0 1
Fomitiporia_mediterranea_v1.0 1
Tulasnella_calospora_AL13/4D_v1.0 1
Postia_placenta_ 2
Wolfiporia_cocos_MD-104_SS10__v1.0 1
Fomitopsis_pinicolav1.0 1
Fomitopsis_pinicola_FP-58527_SS1_v3.0 1
Phanerochaete_chrysosporium_RP-78_2.1 0
Dichomitus_squalens 1
Trametes_versicolor_v1.0 1
Tremella_mesenterica_   (Witches' butter)   1
Verticillium_dahliae_VdLs.17_ 1
Didymella_exigua_CBS_183.55_v1.0 1
Leptosphaeria_maculans_22 0
Alternaria_brassicicola_ 0
Zasmidium_cellare_ATCC_36951_v1.0 1
Septoria_musiva_v1.0 1
Mycosphaerella_fijiensis_CIRAD86_ 1
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 0
Trichophyton_verrucosum_HKI_0517_ 2
Arthroderma_benhamiae_CBS_112371_ 1
Aspergillus_fumigatus_Af293 1
Candida_tanzawaensis_NRRL_Y-17324__v1.0 0
Candida_dubliniensis_CD36_ 0
Candida_tropicalis_MYA-3404_ 1
Candida_parapsilosis_ 1
Candida_albicans_SC5314 0
Lodderomyces_elongisporus_NRRL_YB-4239_ 0
Pichia_stipitis_CBS_6054_ 0
Candida_guilliermondii_ATCC_6260_ 0
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 0
Debaromyces_hansenii 0
Yarrowia_lipolytica_CLIB122 1
Candida_lusitaniae_ATCC_42720_ 0
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 0
Saccharomyces_bayanus_MIT 1
Catenaria_anguillulae_PL171_v1.0 0
Allomyces_macrogynus_ATCC_38327_ 0
Spizellomyces_punctatus_DAOM_BR117_ 0
Selaginella_moellendorffii_ 3
Pinus_taeda   (Loblolly pine)   7
Picea_abies   (Norway spruce)   2
Eucalyptus_grandis_v201   (Rose gum)   12
Theobroma_cacao_B97-61/B2_v1   (Cacao)   5
Gossypium_raimondii_v221 10
Citrus_clementina_v165 3
Citrus_sinensis_v154   (Sweet orange)   5
Thellungiella_halophila_v173 4
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   6
Capsella_rubella_v183 5
Arabidopsis_lyrata_   (Lyrate rockcress)   5
Arabidopsis_thaliana_10   (Thale cress)   6
Carica_papaya_   (Papaya)   1
Medicago_truncatula_   (Barrel medic)   12
Phaseolus_vulgaris_v186   (French bean)   4
Glycine_max_v109   (Soybean)   9
Cucumis_sativus_v122   (Cucumber)   9
Fragaria_vesca_   (Wild strawberry)   5
Malus_domestica_v196   (Apple)   6
Prunus_persica_v139   (Peach)   7
Linum_usitatissimum_v200   (Flax)   8
Manihot_esculenta_v147   (Cassava)   4
Populus_trichocarpa_v156   (Black cottonwood)   7
Vitis_vinifera_   (Wine grape)   5
Mimulus_guttatus_v140   (Spotted monkey flower)   5
Solanum_lycopersicum_v.2.3   (Tomato)   3
Solanum_tuberosum_   (Potato)   3
Actinidia_chinensis_Hongyang_ 4
Aquilegia_coerulea_v195 11
Triticum_urartu_22 4
Triticum_aestivum_22   (Bread wheat)   19
Aegilops_tauschii_22 5
Brachypodium_distachyon_   (Stiff brome)   12
Oryza_barthii_22   (African wild rice)   7
Oryza_meridionalis_22 4
Oryza_glumaepatula_22 9
Oryza_glaberrima   (African rice)   8
Oryza_punctata_22 10
Oryza_nivara_22 8
Oryza_brachyantha_22   (Malo sina)   2
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   8
Oryza_sativa_v193   (Rice)   8
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   6
Panicum_virgatum_v202   (Switchgrass)   21
Setaria_italica_v164   (Foxtail millet)   15
Zea_mays_subsp._mays_   (Maize)   23
Zea_mays_v181   (Maize)   25
Sorghum_bicolor_   (Sorghum)   9
Musa_balbisiana   (Balbis banana)   2
Musa_acuminata_22   (Wild Malaysian banana)   5
Amborella_trichopoda_22 4
Physcomitrella_patens 3
Coccomyxa_subellipsoidea_sp._C-169_v2 2
Chlorella_variabilis_sp._NC64A_ 1
Chlorella_vulgaris_ 1
Volvox_carteri_f._nagariensis_ 3
Volvox_carteri_v199 3
Chlamydomonas_reinhardtii_4.0 1
Ostreococcus_sp._RCC809_ 1
Ostreococcus_lucimarinus_CCE9901_ 1
Bathycoccus_prasinos_ 4
Micromonas_sp._RCC299_ 2
Micromonas_pusilla_CCMP1545_v3.0 4
Cyanidioschyzon_merolae_strain_10D_22 6
Cyanidioschyzon_merolae 6
Porphyridium_purpureum_02_2012 4
Bigelowiella_natans_CCMP2755_22 3
Cyanophora_paradoxa_ 4
Ectocarpus_siliculosus 3
Aureococcus_anophagefferens_ 0
Pythium_arrhenomanes_ATCC_12531_22 1
Pythium_aphanidermatum_DAOM_BR444_22 1
Pythium_vexans_DAOM_BR484_22 0
Phytophthora_capsici_ 0
Phaeodactylum_tricornutumCCAP_1055/1 2
Fragilariopsis_cylindrus 3
Thalassiosira_pseudonana_CCMP1335 2
Neospora_caninum 0
Toxoplasma_gondii_VEG 0
Toxoplasma_gondii_ME49 0
Toxoplasma_gondii_GT1 0
Theileria_annulata 0
Plasmodium_falciparum_3D7_ 0
Plasmodium_vivax_SaI-1_7.0 0
Plasmodium_knowlesi_strain_H_ 0
Plasmodium_yoelii_ssp._yoelii_1_ 0
Plasmodium_chabaudi_ 0
Plasmodium_berghei_ANKA_ 0
Symbiodinium_minutum_clade_B1_v1.2 1
Naegleria_gruberi_ 1
Guillardia_theta_CCMP2712_v1.0_ 1
Emiliania_huxleyi_CCMP1516_ 1
Thermobaculum_terrenum_ATCC_BAA-798 1
Pseudanabaena_sp._PCC_7367 1
Microcoleus_sp._PCC_7113 1
Geitlerinema_sp._PCC_7407 1
Rivularia_sp._PCC_7116 1
Anabaena_variabilis_ATCC_29413 1
Nostoc_sp._PCC_7524 1
Acidothermus_cellulolyticus_11B 1
Frankia_symbiont_of_Datisca_glomerata 1
Frankia_sp._EAN1pec 2
Thermobifida_fusca_YX 1
Actinosynnema_mirum_DSM_43827 1
Mycobacterium_abscessus_ATCC_19977 1
Mycobacterium_sp._JLS 1
Mycobacterium_gilvum_PYR-GCK 1
Corynebacterium_glutamicum_R 1
Arthrobacter_phenanthrenivorans_Sphe3 1
Arthrobacter_aurescens_TC1 1
Actinomyces_sp._F0330 0
Deinococcus_radiodurans_R1 2
Ruminococcus_albus_7 0
Thermaerobacter_marianensis_DSM_12885 3
Clostridium_lentocellum_DSM_5427 0
Acetohalobium_arabaticum_DSM_5501 0
Pirellula_staleyi_DSM_6068 1
Brachyspira_intermedia_PWS/A 1
Spirochaeta_caldaria_DSM_7334 0
Helicobacter_cinaedi_PAGU611 1
Cupriavidus_necator_N-1 1
Rhodospirillum_photometricum_DSM_122 1
Granulibacter_bethesdensis_CGDNIH1 1
Gluconobacter_oxydans_621H 1
Brucella_ovis_ATCC_25840 1
Cellvibrio_japonicus_Ueda107 1
Shewanella_violacea_DSS12 0
Methylomonas_methanica_MC09 0
Enterobacteriaceae_bacterium_strain_FGI_57 1
Candidatus_Korarchaeum_cryptofilum_OPF8 1
Pyrolobus_fumarii_1A 1
Hyperthermus_butylicus_DSM_5456 1
Thermogladius_cellulolyticus_1633 1
Ignisphaera_aggregans_DSM_17230 1
Aeropyrum_pernix_K1 1
Ignicoccus_hospitalis_KIN4/I 1
Thermosphaera_aggregans_DSM_11486 1
Staphylothermus_marinus_F1 1
Desulfurococcus_fermentans_DSM_16532 1
Desulfurococcus_kamchatkensis_1221n 1
Desulfurococcus_mucosus_DSM_2162 1
Metallosphaera_cuprina_Ar-4 1
Metallosphaera_sedula_DSM_5348 1
Acidianus_hospitalis_W1 1
Sulfolobus_tokodaii_str._7 1
Sulfolobus_islandicus_Y.N.15.51 1
Sulfolobus_solfataricus_P2 1
Sulfolobus_acidocaldarius_DSM_639 1
Vulcanisaeta_distributa_DSM_14429 1
Caldivirga_maquilingensis_IC-167 1
Pyrobaculum_sp._1860 1
Pyrobaculum_calidifontis_JCM_11548 1
Pyrobaculum_arsenaticum_DSM_13514 1
Pyrobaculum_oguniense_TE7 1
Thermoproteus_neutrophilus_V24Sta 1
Pyrobaculum_aerophilum_str._IM2 1
Pyrobaculum_islandicum_DSM_4184 1
Thermoproteus_tenax_Kra_1 1
Methanosarcina_acetivorans_C2A 1
Thermococcus_gammatolerans_EJ3 1
Methanothermobacter_thermautotrophicus_str._Delta_H 1

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   1
Cryptococcus_neoformans_var._grubii_H99_ 1
Cryptococcus_neoformans_B-3501A_ 1
Cryptococcus_neoformans_JEC21_ 1
Coccidioides_immitis_RMSCC_3703_ 1
Histoplasma_capsulatum_G186AR 0
Aspergillus_fumigatus_A1163_ 1
Candida_albicans_WO-1_ 0
Batrachochytrium_dendrobatidis_JEL423_ 0
Batrachochytrium_dendrobatidis_JAM81_ 0
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   4
Hordeum_vulgare_22   (Domesticated barley)   7
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   5
Neospora_caninum_Nc-Liverpool_6.2 0
Plasmodium_falciparum_HB3_ 0
Plasmodium_falciparum_Dd2_ 0
Synechococcus_sp._JA-2-3B'a(2-13) 1
Synechococcus_sp._JA-3-3Ab 1
Gloeobacter_kilaueensis_Gloeobacter_sp._JS 1
Frankia_sp._CcI3 1
Streptomyces_venezuelae_ATCC_10712 1
Saccharothrix_espanaensis_DSM_44229 1
Rhodococcus_erythropolis_CCM2595 1
Mycobacterium_sp._KMS 1
Mycobacterium_sp._MCS 1
Corynebacterium_pseudotuberculosis_C231 1
Bifidobacterium_longum_NCC2705 1
Bifidobacterium_animalis_subsp._lactis_CNCM_I-2494 1
Bifidobacterium_animalis_subsp._lactis_BB-12 1
Actinomyces_viscosus_C505 0
Deinococcus_peraridilitoris_DSM_19664 1
Enterococcus_faecalis_OG1RF 1
Desulfovibrio_vulgaris_RCH1 2
Gluconobacter_oxydans_H24 1
Hyphomicrobium_nitrativorans_NL23 1
Mannheimia_haemolytica_M42548 0
Mannheimia_haemolytica_USDA-ARS-USMARC-185 0
Escherichia_coli_CFT073 1
Aeropyrum_camini_SY1_=_JCM_12091 1
Sulfolobus_islandicus_LAL14/1 1
Sulfolobus_islandicus_REY15A 1
Sulfolobus_islandicus_HVE10/4 1
Sulfolobus_islandicus_Y.G.57.14 1
Sulfolobus_islandicus_L.S.2.15 1
Sulfolobus_islandicus_M.16.27 1
Sulfolobus_islandicus_M.14.25 1
Sulfolobus_islandicus_M.16.4 1
Sulfolobus_islandicus_L.D.8.5 1
Sulfolobus_solfataricus_98/2 1
Sulfolobus_acidocaldarius_SUSAZ 1
Sulfolobus_acidocaldarius_Ron12/I 1
Sulfolobus_acidocaldarius_N8 1
Candidatus_Methanomassiliicoccus_intestinalis_Issoire-Mx1 1

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Longest transcript per gene
Genome     Number
Felis_catus_69   (Domestic cat)   1
Arabidopsis_thaliana_10   (Thale cress)   4

Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   1
Picea_sitchensis__(Incomplete)   (Sitka spruce)   3
Lotus_japonicus__(Early_assembly) 4
Malus_x_domestica_(Duplicate)   (Apple)   6
Ricinus_communis__(Early_assembly)   (Castor bean)   3
Nicotiana_benthamiana_0.4.4_(Early_draft) 6
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   3
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   3
Phoenix_dactylifera__(Early_draft)   (Date palm)   2
Protein_Data_Bank_(all_PDB_sequenc) 118
STRING_v9.0.5_(STRING) 116
Uniprot_2018_03_genome 5145
NCBI_2017_08_genome 2284
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 0
Protozoadb_2010_08_(Protozoadb) 0
TargetDB__(Targets) 7
PDB_chains_(SCOP_1.75)_(PDB) 3

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