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Domain combinations for _gap_,52047,52058,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

52047 - RNI-like
52058 - L domain-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   1
Gorilla_gorilla_76_3.1   (Western gorilla)   0
Papio_anubis_76   (Olive baboon)   2
Macaca_mulatta_76_1   (Rhesus monkey)   1
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   0
Rattus_norvegicus_76_5.0   (Norway rat)   1
Mus_musculus_76_38   (House mouse)   1
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   1
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   0
Mustela_putorius_furo_76_1.0   (Domestic ferret)   1
Ailuropoda_melanoleuca_76_1   (Giant panda)   0
Equus_caballus_76_2   (Horse)   0
Pteropus_vampyrus_76_1   (Large flying fox)   0
Erinaceus_europaeus_76   (Western European hedgehog)   0
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   1
Ornithorhynchus_anatinus_76_5   (Platypus)   0
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   0
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   0
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   0
Poecilia_formosa_76   (Amazon molly)   1
Danio_rerio_76_9   (Zebrafish)   0
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   4
Octopus_bimaculoides_280 0
Helobdella_robusta_ 1
Danaus_plexippus_OGS1.0   (Monarch butterfly)   0
Heliconius_melpomene_   (Postman butterfly)   0
Bombyx_mori_   (Domestic silkworm)   2
Nasonia_vitripennis_   (Jewel wasp)   0
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   1
Linepithema_humile_v1.1   (Argentine ant)   1
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   1
Solenopsis_invicta_v.2.2.3   (Red fire ant)   1
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   0
Atta_cephalotes_v1.1 1
Drosophila_willistoni_1.3 1
Drosophila_pseudoobscura_2.13 0
Drosophila_persimilis_1.3 0
Drosophila_suzukii 1
Drosophila_yakuba_1.3 0
Drosophila_simulans_1.3 1
Drosophila_melanogaster_76_5   (Fruit fly)   3
Drosophila_erecta_1.3 0
Drosophila_virilis_1.2 0
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   0
Anopheles_gambiae_49_3j   (African malaria mosquito)   1
Tribolium_castaneum_3.0   (Red flour beetle)   0
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   0
Rhodnius_prolixus_22 0
Echinococcus_multilocularis_ 0
Taenia_solium_   (Pork tapeworm)   0
Acropora_digitifera_v1.0 0
Proterospongia_sp._ATCC_50818_ 0
Stereum_hirsutum_FP-91666_SS1__v1.0 0
Trichoderma_asperellum_CBS_433.97_v1.0 0
Aspergillus_terreus_NIH2624_ 0
Candida_tropicalis_MYA-3404_ 1
Candida_albicans_SC5314 1
Babjeviella_inositovora_NRRL_Y-12698_v1.0 2
Pichia_stipitis_CBS_6054_ 2
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 0
Selaginella_moellendorffii_ 1
Pinus_taeda   (Loblolly pine)   1
Picea_abies   (Norway spruce)   1
Eucalyptus_grandis_v201   (Rose gum)   16
Theobroma_cacao_B97-61/B2_v1   (Cacao)   9
Gossypium_raimondii_v221 11
Citrus_clementina_v165 9
Citrus_sinensis_v154   (Sweet orange)   10
Thellungiella_halophila_v173 5
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   4
Capsella_rubella_v183 5
Arabidopsis_lyrata_   (Lyrate rockcress)   3
Arabidopsis_thaliana_10   (Thale cress)   3
Carica_papaya_   (Papaya)   0
Medicago_truncatula_   (Barrel medic)   11
Phaseolus_vulgaris_v186   (French bean)   6
Glycine_max_v109   (Soybean)   17
Cucumis_sativus_v122   (Cucumber)   1
Fragaria_vesca_   (Wild strawberry)   7
Malus_domestica_v196   (Apple)   18
Prunus_persica_v139   (Peach)   6
Linum_usitatissimum_v200   (Flax)   2
Manihot_esculenta_v147   (Cassava)   5
Populus_trichocarpa_v156   (Black cottonwood)   4
Vitis_vinifera_   (Wine grape)   2
Mimulus_guttatus_v140   (Spotted monkey flower)   3
Solanum_lycopersicum_v.2.3   (Tomato)   4
Solanum_tuberosum_   (Potato)   3
Actinidia_chinensis_Hongyang_ 2
Aquilegia_coerulea_v195 5
Triticum_urartu_22 5
Triticum_aestivum_22   (Bread wheat)   8
Aegilops_tauschii_22 14
Brachypodium_distachyon_   (Stiff brome)   2
Oryza_barthii_22   (African wild rice)   5
Oryza_meridionalis_22 5
Oryza_glumaepatula_22 5
Oryza_glaberrima   (African rice)   6
Oryza_punctata_22 5
Oryza_nivara_22 3
Oryza_brachyantha_22   (Malo sina)   4
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   4
Oryza_sativa_v193   (Rice)   4
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   3
Panicum_virgatum_v202   (Switchgrass)   10
Setaria_italica_v164   (Foxtail millet)   3
Zea_mays_subsp._mays_   (Maize)   1
Zea_mays_v181   (Maize)   0
Sorghum_bicolor_   (Sorghum)   9
Musa_balbisiana   (Balbis banana)   0
Musa_acuminata_22   (Wild Malaysian banana)   6
Amborella_trichopoda_22 1
Physcomitrella_patens 0
Chlorella_variabilis_sp._NC64A_ 0
Chlamydomonas_reinhardtii_4.0 0
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 1
Trypanosoma_vivax_ 4
Trypanosoma_brucei_gambiense_v4.1 2
Trypanosoma_brucei_TREU927_v4.1 2
Ectocarpus_siliculosus 2
Pythium_irregulare_DAOM_BR486_22 1
Fragilariopsis_cylindrus 2
Tetrahymena_thermophila_SB210_1_ 1
Symbiodinium_minutum_clade_B1_v1.2 0
Naegleria_gruberi_ 1
Parabacteroides_distasonis_ATCC_8503 0
Pseudomonas_syringae_pv._tomato_str._DC3000 1

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Strains
Genome     Number
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   3
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   1
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   5
Hordeum_vulgare_22   (Domesticated barley)   7
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   6
Trypanosoma_brucei_Lister_427_v4.1 1
Roseburia_intestinalis_XB6B4 0
Enterococcus_faecalis_V583 1
Listeria_monocytogenes_J1-220 0
Listeria_monocytogenes_ATCC_19117 0

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   1
Gorilla_gorilla_69_3.1   (Western gorilla)   0
Macaca_mulatta_69_1   (Rhesus monkey)   1
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   0
Mus_musculus_69_38   (House mouse)   0
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   1
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   0
Mustela_putorius_furo_69_1.0   (Domestic ferret)   1
Ailuropoda_melanoleuca_69_1   (Giant panda)   0
Equus_caballus_69_2   (Horse)   0
Pteropus_vampyrus_69_1   (Large flying fox)   0
Erinaceus_europaeus_69   (Western European hedgehog)   0
Ornithorhynchus_anatinus_69_5   (Platypus)   0
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   0
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   0
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   0
Danio_rerio_69_9   (Zebrafish)   0
Drosophila_melanogaster_69_5   (Fruit fly)   0
Arabidopsis_thaliana_10   (Thale cress)   3

Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   1
Homo_sapiens__(NCBI_version)   (Human)   1
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   0
Lotus_japonicus__(Early_assembly) 2
Malus_x_domestica_(Duplicate)   (Apple)   18
Ricinus_communis__(Early_assembly)   (Castor bean)   3
Nicotiana_benthamiana_0.4.4_(Early_draft) 2
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   5
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   4
Phoenix_dactylifera__(Early_draft)   (Date palm)   1
NCBI_plasmid_sequences_(Plasmids) 1
STRING_v9.0.5_(STRING) 51
Uniprot_2018_03_genome 6210
NCBI_2017_08_genome 833
Protozoadb_2010_08_(Protozoadb) 4

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