SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

  Home > SCOP hierarchy > Domain combination - _gap_,52058

Domain combinations for _gap_,52058 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

52058 - L domain-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

Jump to [ Top of page · Domain combinations in individual genomes ]

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   54
Pan_troglodytes_76_2.1.4   (Chimpanzee)   20
Gorilla_gorilla_76_3.1   (Western gorilla)   21
Pongo_abelii_76_2   (Sumatran orangutan)   18
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   18
Papio_anubis_76   (Olive baboon)   20
Macaca_mulatta_76_1   (Rhesus monkey)   23
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   33
Otolemur_garnettii_76_3   (Small-eared galago)   19
Microcebus_murinus_76_1   (Gray mouse lemur)   18
Rattus_norvegicus_76_5.0   (Norway rat)   18
Mus_musculus_76_38   (House mouse)   35
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   15
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   20
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   20
Cavia_porcellus_76_3   (Domestic guinea pig)   21
Oryctolagus_cuniculus_76_2   (Rabbit)   23
Ochotona_princeps_76   (American pika)   14
Tupaia_belangeri_76   (Northern tree shrew)   16
Sus_scrofa_76_10.2   (Pig)   22
Bos_taurus_76_3.1   (Cattle)   22
Ovis_aries_76_3.1   (Sheep)   20
Vicugna_pacos_76_1   (Alpaca)   12
Tursiops_truncatus_76_1   (Bottlenose dolphin)   20
Mustela_putorius_furo_76_1.0   (Domestic ferret)   17
Ailuropoda_melanoleuca_76_1   (Giant panda)   18
Canis_familiaris_76_3.1   (Dog)   25
Felis_catus_76_6.2   (Domestic cat)   16
Equus_caballus_76_2   (Horse)   18
Myotis_lucifugus_76_2.0   (Little brown bat)   15
Pteropus_vampyrus_76_1   (Large flying fox)   20
Sorex_araneus_76_1   (European shrew)   8
Erinaceus_europaeus_76   (Western European hedgehog)   11
Procavia_capensis_76_1   (Cape rock hyrax)   12
Loxodonta_africana_76_3   (African savanna elephant)   18
Echinops_telfairi_76   (Small Madagascar hedgehog)   9
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   20
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   12
Macropus_eugenii_76_1.0   (Tammar wallaby)   13
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   18
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   15
Ornithorhynchus_anatinus_76_5   (Platypus)   19
Saccoglossus_kowalevskii_v3.0 10
Petromyzon_marinus_76_7.0   (Sea lamprey)   9
Meleagris_gallopavo_76_2   (Turkey)   12
Gallus_gallus_76_4   (Chicken)   15
Anas_platyrhynchos_76_1.0   (Mallard)   18
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   11
Ficedula_albicollis_76_1.0   (Collared flycatcher)   17
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   19
Anolis_carolinensis_76_2.0   (Green anole)   20
Xenopus_laevis_   (African clawed frog)   33
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   20
Latimeria_chalumnae_76_1   (Coelacanth)   21
Lepisosteus_oculatus_76   (Spotted gar)   22
Gadus_morhua_76_1   (Atlantic cod)   16
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   17
Takifugu_rubripes_76_4   (Torafugu)   29
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   23
Oryzias_latipes_76_1   (Japanese medaka)   22
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   22
Poecilia_formosa_76   (Amazon molly)   12
Oreochromis_niloticus_76_1.0   (Nile tilapia)   23
Astyanax_mexicanus_76   (Mexican tetra)   29
Danio_rerio_76_9   (Zebrafish)   32
Oikopleura_dioica 13
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   7
Ciona_intestinalis_76   (Vase tunicate)   8
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   14
Adineta_vaga 16
Octopus_bimaculoides_280 12
Crassostrea_gigas_22   (Pacific oyster)   12
Lottia_gigantea_   (Owl limpet)   9
Helobdella_robusta_ 8
Capitella_sp._I_ 18
Danaus_plexippus_OGS1.0   (Monarch butterfly)   5
Heliconius_melpomene_   (Postman butterfly)   7
Bombyx_mori_   (Domestic silkworm)   11
Nasonia_vitripennis_   (Jewel wasp)   3
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   17
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   5
Linepithema_humile_v1.1   (Argentine ant)   3
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   11
Solenopsis_invicta_v.2.2.3   (Red fire ant)   6
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   5
Atta_cephalotes_v1.1 6
Camponotus_floridanus_v3.3   (Florida carpenter ant)   5
Lucilia_cuprina   (Australian sheep blowfly)   5
Drosophila_grimshawi_1.3 1
Drosophila_willistoni_1.3 7
Drosophila_pseudoobscura_2.13 5
Drosophila_persimilis_1.3 8
Drosophila_suzukii 3
Drosophila_yakuba_1.3 7
Drosophila_simulans_1.3 4
Drosophila_sechellia_1.3 8
Drosophila_melanogaster_76_5   (Fruit fly)   1
Drosophila_erecta_1.3 3
Drosophila_ananassae_1.3 2
Drosophila_virilis_1.2 2
Drosophila_mojavensis_1.3 4
Megaselia_scalaris_22 8
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   15
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   9
Anopheles_darlingi_22   (American malaria mosquito)   10
Anopheles_gambiae_49_3j   (African malaria mosquito)   11
Tribolium_castaneum_3.0   (Red flour beetle)   23
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   5
Acyrthosiphon_pisum_   (Pea aphid)   6
Rhodnius_prolixus_22 6
Daphnia_pulex_   (Common water flea)   19
Strigamia_maritima_22 12
Sarcoptes_scabiei 5
Tetranychus_urticae_   (Two-spotted spider mite)   10
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   22
Pristionchus_pacificus_ 4
Meloidogyne_incognita_   (Southern root-knot nematode)   2
Meloidogyne_hapla_ 4
Onchocerca_volvulus_22 5
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   3
Caenorhabditis_japonica_ 12
Caenorhabditis_brenneri_ 4
Caenorhabditis_remanei_ 4
Caenorhabditis_elegans_76_235   (Roundworm)   3
Caenorhabditis_briggsae_2 8
Trichinella_spiralis_22 2
Hymenolepis_microstoma_ 0
Echinococcus_multilocularis_ 2
Echinococcus_granulosus_ 2
Taenia_solium_   (Pork tapeworm)   2
Schistosoma_mansoni_ 1
Mnemiopsis_leidyi   (Sea walnut)   3
Thelohanellus_kitauei 0
Acropora_digitifera_v1.0 5
Nematostella_vectensis_1.0   (Starlet sea anemone)   11
Hydra_vulgaris 2
Amphimedon_queenslandica 14
Trichoplax_adhaerens_ 9
Proterospongia_sp._ATCC_50818_ 16
Monosiga_brevicollis_ 8
Sphaeroforma_arctica_JP610_ 8
Capsaspora_owczarzaki_ATCC_30864_ 4
Conidiobolus_coronatus_NRRL28638_v1.0 22
Mortierella_verticillata_NRRL_6337_ 2
Phycomyces_blakesleeanus_ 2
Rhizopus_oryzae_RA_99-880_ 1
Mucor_circinelloides_ 2
Rhizomucor_miehei_CAU432_ 2
Malassezia_globosa_CBS_7966_ 2
Sporisorium_reilianum_22 1
Ustilago_maydis_ 0
Mixia_osmundae_IAM_14324_v1.0 0
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 4
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 1
Melampsora_laricis-populina_ 3
Rhodotorula_graminis_WP1_v1.0 2
Sporobolomyces_roseus_IAM_13481_ 1
Microbotryum_violaceum_22 2
Wallemia_sebi_v1.0 0
Sphaerobolus_stellatus_v1.0 8
Piloderma_croceum_F_1598_v1.0 4
Serpula_lacrymans_var._lacrymans_S7.9_ 2
Coniophora_puteana 12
Hydnomerulius_pinastri_v2.0 3
Paxillus_rubicundulus_Ve08.2h10_v1.0 1
Pisolithus_microcarpus_441_v1.0 3
Pisolithus_tinctorius_Marx_270_v1.0 2
Scleroderma_citrinum_Foug_A_v1.0 3
Coprinopsis_cinerea_okayama7_130_v3 2
Pleurotus_ostreatus_   (Oyster mushroom)   4
Amanita_thiersii_Skay4041_v1.0 1
Amanita_muscaria_Koide_v1.0   (Fly agaric)   6
Galerina_marginata_v1.0 7
Hebeloma_cylindrosporum_h7_v2.0 5
Laccaria_bicolor_S238N-H82_ 6
Agaricus_bisporus_var._bisporus_ 3
Schizophyllum_commune_ 5
Stereum_hirsutum_FP-91666_SS1__v1.0 4
Heterobasidion_annosum_ 4
Gloeophyllum_trabeumv1.0 3
Punctularia_strigosozonata_v1.0 4
Sebacina_vermifera_MAFF_305830_v1.0 17
Fomitiporia_mediterranea_v1.0 4
Tulasnella_calospora_AL13/4D_v1.0 6
Postia_placenta_ 5
Wolfiporia_cocos_MD-104_SS10__v1.0 2
Fomitopsis_pinicolav1.0 3
Fomitopsis_pinicola_FP-58527_SS1_v3.0 2
Phanerochaete_chrysosporium_RP-78_2.1 0
Dichomitus_squalens 3
Trametes_versicolor_v1.0 5
Tremella_mesenterica_   (Witches' butter)   2
Daldinia_eschscholzii_EC12_v1.0 1
Apiospora_montagnei_NRRL_25634_v1.0 1
Magnaporthe_poae_ATCC_64411_22 1
Magnaporthe_grisea_70-15_ 1
Podospora_anserina_ 1
Sporotrichum_thermophile_ATCC_42464_ 1
Thielavia_terrestris_NRRL_8126_ 1
Chaetomium_globosum_CBS_148.51_ 2
Neurospora_tetrasperma_ 1
Neurospora_discreta_FGSC_8579_ 1
Neurospora_crassa_OR74A_ 1
Cryphonectria_parasitica_   (Chestnut blight fungus)   1
Verticillium_albo-atrum_VaMs.102_ 2
Verticillium_dahliae_VdLs.17_ 2
Acremonium_alcalophilumv_1.0 2
Glomerella_graminicola_22 1
Fusarium_graminearum_ 3
Nectria_haematococca_mpVI_ 3
Fusarium_oxysporum_f._sp._lycopersici_4286_ 1
Fusarium_verticillioides_7600_ 3
Trichoderma_asperellum_CBS_433.97_v1.0 1
Trichoderma_atroviride_ 2
Trichoderma_citrinoviride_v1.0 2
Trichoderma_reesei_1.2 1
Trichoderma_virens_Gv29-8_ 2
Trichoderma_longibrachiatum_ATCC_18648_v1.0 1
Trichoderma_harzianum_CBS_226.95_v1.0 2
Amorphotheca_resinae_v1.0   (Creosote fungus)   1
Botrytis_cinerea_B05.10_ 1
Sclerotinia_sclerotiorum_ 1
Blumeria_graminis_22 0
Didymella_exigua_CBS_183.55_v1.0 1
Leptosphaeria_maculans_22 0
Setosphaeria_turcica_v1.0 2
Cochliobolus_miyabeanus_ATCC_44560_v1.0 3
Cochliobolus_victoriae_FI3_v1.0 2
Cochliobolus_carbonum_26-R-13_v1.0 2
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   2
Alternaria_brassicicola_ 2
Cochliobolus_lunatus_m118_v2.0 2
Pyrenophora_teres_f._teres_22 1
Pyrenophora_tritici-repentis_ 1
Stagonospora_nodorum_ 1
Mycosphaerella_graminicola_IPO323_ 2
Zasmidium_cellare_ATCC_36951_v1.0 2
Dothistroma_septosporum 1
Septoria_musiva_v1.0 1
Mycosphaerella_fijiensis_CIRAD86_ 1
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 1
Paracoccidioides_brasiliensis_Pb18_ 1
Coccidioides_posadasii_RMSCC_3488_ 1
Coccidioides_immitis_RS_ 1
Ajellomyces_dermatitidis_SLH14081_ 1
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 1
Microsporum_canis_CBS_113480_ 1
Trichophyton_equinum_CBS_127.97_ 2
Trichophyton_verrucosum_HKI_0517_ 0
Arthroderma_benhamiae_CBS_112371_ 1
Trichophyton_tonsurans_CBS_112818_ 1
Trichophyton_rubrum_CBS_118892_ 1
Uncinocarpus_reesii_1704_ 1
Aspergillus_zonatus_v1.0 0
Penicillium_chrysogenum_Wisconsin_54-1255_ 1
Penicillium_chrysogenum_v1.0 1
Aspergillus_acidus_v1.0 0
Aspergillus_fumigatus_Af293 0
Aspergillus_brasiliensis_v1.0 1
Aspergillus_nidulans_FGSC_A4_ 0
Aspergillus_sydowii_v1.0 0
Aspergillus_versicolor_v1.0 0
Aspergillus_glaucus 1
Aspergillus_carbonarius_ITEM_5010_ 0
Neosartorya_fischeri_NRRL_181_ 0
Aspergillus_terreus_NIH2624_ 1
Aspergillus_tubingensis_v1.0 0
Aspergillus_wentii_v1.0 0
Aspergillus_oryzae_RIB40_ 1
Aspergillus_niger_22 1
Aspergillus_niger_ATCC_1015_ 0
Aspergillus_flavus_NRRL3357_ 0
Aspergillus_clavatus_NRRL_1_ 1
Penicillium_marneffei_ATCC_18224_ 1
Tuber_melanosporum_Mel28_22 1
Tuber_melanosporum_Vittad_   (Perigord truffle)   1
Hansenula_polymorpha_v2.0 1
Dekkera_bruxellensis_CBS_2499_v2.0 1
Pichia_membranifaciensv1.0 0
Candida_tanzawaensis_NRRL_Y-17324__v1.0 4
Candida_dubliniensis_CD36_ 2
Candida_tropicalis_MYA-3404_ 12
Candida_parapsilosis_ 4
Candida_albicans_SC5314 6
Lodderomyces_elongisporus_NRRL_YB-4239_ 1
Babjeviella_inositovora_NRRL_Y-12698_v1.0 7
Pichia_stipitis_CBS_6054_ 6
Candida_guilliermondii_ATCC_6260_ 14
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 5
Debaromyces_hansenii 4
Wickerhamomyces_anomalus 4
Pichia_pastoris_GS115_ 1
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 1
Yarrowia_lipolytica_CLIB122 2
Candida_lusitaniae_ATCC_42720_ 2
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 1
Vanderwaltozyma_polyspora_DSM_70294_ 1
Candida_glabrata_CBS138 1
Kluyveromyces_thermotolerans_CBS_6340 1
Lachancea_kluyveri_ 1
Kluyveromyces_waltii 1
Ashbya_gossypii_ATCC_10895_ 1
Zygosaccharomyces_rouxii_ 1
Saccharomyces_mikatae_MIT 1
Saccharomyces_paradoxus_MIT 1
Saccharomyces_cerevisiae_76   (Baker's yeast)   1
Saccharomyces_bayanus_MIT 2
Kluyveromyces_lactis 1
Schizosaccharomyces_cryophilus_OY26_22 0
Schizosaccharomyces_octosporus_yFS286_ 0
Schizosaccharomyces_japonicus_yFS275_ 0
Schizosaccharomyces_pombe   (Fission yeast)   0
Catenaria_anguillulae_PL171_v1.0 5
Allomyces_macrogynus_ATCC_38327_ 14
Spizellomyces_punctatus_DAOM_BR117_ 2
Dictyostelium_discoideum 21
Dictyostelium_purpureum_ 52
Entamoeba_dispar_1.2 99
Entamoeba_invadens_1.2 251
Entamoeba_histolytica_1 45
Selaginella_moellendorffii_ 24
Pinus_taeda   (Loblolly pine)   152
Picea_abies   (Norway spruce)   88
Eucalyptus_grandis_v201   (Rose gum)   62
Theobroma_cacao_B97-61/B2_v1   (Cacao)   55
Gossypium_raimondii_v221 88
Citrus_clementina_v165 70
Citrus_sinensis_v154   (Sweet orange)   126
Thellungiella_halophila_v173 25
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   45
Capsella_rubella_v183 25
Arabidopsis_lyrata_   (Lyrate rockcress)   30
Arabidopsis_thaliana_10   (Thale cress)   25
Carica_papaya_   (Papaya)   20
Medicago_truncatula_   (Barrel medic)   87
Phaseolus_vulgaris_v186   (French bean)   57
Glycine_max_v109   (Soybean)   54
Cucumis_sativus_v122   (Cucumber)   28
Fragaria_vesca_   (Wild strawberry)   56
Malus_domestica_v196   (Apple)   161
Prunus_persica_v139   (Peach)   43
Linum_usitatissimum_v200   (Flax)   65
Manihot_esculenta_v147   (Cassava)   51
Populus_trichocarpa_v156   (Black cottonwood)   71
Vitis_vinifera_   (Wine grape)   38
Mimulus_guttatus_v140   (Spotted monkey flower)   61
Solanum_lycopersicum_v.2.3   (Tomato)   36
Solanum_tuberosum_   (Potato)   58
Actinidia_chinensis_Hongyang_ 48
Aquilegia_coerulea_v195 51
Triticum_urartu_22 47
Triticum_aestivum_22   (Bread wheat)   178
Aegilops_tauschii_22 72
Brachypodium_distachyon_   (Stiff brome)   41
Oryza_barthii_22   (African wild rice)   44
Oryza_meridionalis_22 49
Oryza_glumaepatula_22 62
Oryza_glaberrima   (African rice)   47
Oryza_punctata_22 54
Oryza_nivara_22 52
Oryza_brachyantha_22   (Malo sina)   40
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   72
Oryza_sativa_v193   (Rice)   71
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   39
Panicum_virgatum_v202   (Switchgrass)   89
Setaria_italica_v164   (Foxtail millet)   42
Zea_mays_subsp._mays_   (Maize)   42
Zea_mays_v181   (Maize)   52
Sorghum_bicolor_   (Sorghum)   41
Musa_balbisiana   (Balbis banana)   42
Musa_acuminata_22   (Wild Malaysian banana)   38
Amborella_trichopoda_22 33
Physcomitrella_patens 26
Coccomyxa_subellipsoidea_sp._C-169_v2 1
Asterochloris_sp._Cgr/DA1pho_v1.0 2
Chlorella_variabilis_sp._NC64A_ 11
Chlorella_vulgaris_ 3
Volvox_carteri_f._nagariensis_ 6
Volvox_carteri_v199 5
Chlamydomonas_reinhardtii_4.0 12
Ostreococcus_sp._RCC809_ 2
Ostreococcus_lucimarinus_CCE9901_ 1
Ostreococcus_tauri_ 2
Bathycoccus_prasinos_ 1
Micromonas_sp._RCC299_ 5
Micromonas_pusilla_CCMP1545_v3.0 4
Cyanidioschyzon_merolae_strain_10D_22 0
Cyanidioschyzon_merolae 0
Porphyridium_purpureum_02_2012 1
Thecamonas_trahens_ATCC_50062_ 9
Bigelowiella_natans_CCMP2755_22 13
Giardia_lamblia_2.3 1
Cyanophora_paradoxa_ 9
Leishmania_mexicana_2.4 9
Leishmania_major_strain_Friedlin_ 15
Leishmania_infantum_JPCM5_2.4 9
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 7
Trypanosoma_vivax_ 4
Trypanosoma_cruzi_strain_CL_Brener 2
Trypanosoma_congolense_2.4 5
Trypanosoma_brucei_gambiense_v4.1 4
Trypanosoma_brucei_TREU927_v4.1 4
Ectocarpus_siliculosus 31
Aureococcus_anophagefferens_ 8
Albugo_laibachii_22 2
Pythium_iwayamai_DAOM_BR242034_22 69
Pythium_arrhenomanes_ATCC_12531_22 28
Pythium_ultimum_v1.7-2 38
Pythium_aphanidermatum_DAOM_BR444_22 51
Pythium_irregulare_DAOM_BR486_22 55
Pythium_vexans_DAOM_BR484_22 37
Phytophthora_ramorum_1.1   (Sudden oak death agent)   6
Phytophthora_sojae_1.1 14
Phytophthora_infestans_T30-4_ 13
Phytophthora_capsici_ 17
Hyaloperonospora_arabidopsidis_22 1
Phaeodactylum_tricornutumCCAP_1055/1 13
Fragilariopsis_cylindrus 22
Thalassiosira_pseudonana_CCMP1335 13
Perkinsus_marinus_ATCC_50983_ 4
Paramecium_tetraurelia_ 10
Tetrahymena_thermophila_SB210_1_ 4
Ichthyophthirius_multifiliis_strain_G5_ 2
Cryptosporidium_muris 1
Cryptosporidium_parvum_Iowa_II 0
Neospora_caninum 1
Toxoplasma_gondii_VEG 4
Toxoplasma_gondii_ME49 4
Toxoplasma_gondii_GT1 3
Babesia_bovis_T2Bo_ 2
Theileria_annulata 0
Plasmodium_falciparum_3D7_ 1
Plasmodium_vivax_SaI-1_7.0 2
Plasmodium_knowlesi_strain_H_ 2
Plasmodium_yoelii_ssp._yoelii_1_ 4
Plasmodium_chabaudi_ 0
Plasmodium_berghei_ANKA_ 1
Symbiodinium_minutum_clade_B1_v1.2 40
Naegleria_gruberi_ 14
Trichomonas_vaginalis_ 44
Guillardia_theta_CCMP2712_v1.0_ 15
Emiliania_huxleyi_CCMP1516_ 19
Leptolyngbya_sp._PCC_7376 0
Pseudanabaena_sp._PCC_7367 1
Acaryochloris_marina_MBIC11017 0
Microcoleus_sp._PCC_7113 0
Trichodesmium_erythraeum_IMS101 1
Geitlerinema_sp._PCC_7407 0
Cyanothece_sp._PCC_8802 1
Rivularia_sp._PCC_7116 3
Calothrix_sp._PCC_7507 1
Nostoc_punctiforme_PCC_73102 0
Anabaena_sp._90 0
Mycoplasma_fermentans_M64 0
Mycoplasma_hominis_ATCC_23114 0
Eggerthella_lenta_DSM_2243 1
Slackia_heliotrinireducens_DSM_20476 0
Coriobacterium_glomerans_PW2 0
Catenulispora_acidiphila_DSM_44928 0
Stackebrandtia_nassauensis_DSM_44728 0
Thermomonospora_curvata_DSM_43183 0
Streptosporangium_roseum_DSM_43021 0
Streptomyces_coelicolor_A3(2) 0
Streptomyces_sp._SirexAA-E 0
Streptomyces_griseus_subsp._griseus_NBRC_13350 0
Streptomyces_bingchenggensis_BCW-1 0
Streptomyces_violaceusniger_Tu_4113 0
Saccharopolyspora_erythraea_NRRL_2338 0
Amycolatopsis_mediterranei_U32 1
Propionibacterium_propionicum_F0230a 0
Sanguibacter_keddieii_DSM_10542 1
Intrasporangium_calvum_DSM_43043 1
Cellulomonas_fimi_ATCC_484 0
Arthrobacter_chlorophenolicus_A6 1
Arcanobacterium_haemolyticum_DSM_20595 0
Herpetosiphon_aurantiacus_DSM_785 0
Marinithermus_hydrothermalis_DSM_14884 0
Finegoldia_magna_ATCC_29328 0
Erysipelothrix_rhusiopathiae_str._Fujisawa 0
Natranaerobius_thermophilus_JW/NM-WN-LF 0
Clostridiales_genomosp._BVAB3_str._UPII9-5 0
Clostridium_clariflavum_DSM_19732 0
Eubacterium_siraeum 0
Ethanoligenens_harbinense_YUAN-3 1
Faecalibacterium_prausnitzii 0
Ruminococcus_sp. 2
Ruminococcus_bromii 0
Ruminococcus_albus_7 2
Desulfosporosinus_acidiphilus_SJ4 1
Desulfosporosinus_orientis_DSM_765 1
Syntrophobotulus_glycolicus_DSM_8271 0
Desulfitobacterium_hafniense_Y51 1
Desulfitobacterium_dehalogenans_ATCC_51507 2
Desulfotomaculum_acetoxidans_DSM_771 0
Acetobacterium_woodii_DSM_1030 2
Eubacterium_limosum_KIST612 1
Filifactor_alocis_ATCC_35896 1
Clostridium_phytofermentans_ISDg 1
Clostridium_lentocellum_DSM_5427 0
[Ruminococcus]_obeum 1
Eubacterium_rectale_M104/1 1
Eubacterium_rectale_ATCC_33656 1
Roseburia_intestinalis 0
Syntrophomonas_wolfei_subsp._wolfei_str._Goettingen 0
Clostridium_sp._BNL1100 0
Clostridium_kluyveri_DSM_555 2
Clostridium_beijerinckii_NCIMB_8052 0
Clostridium_tetani_E88 0
Clostridium_cellulovorans_743B 0
Clostridium_botulinum_A_str._ATCC_3502 2
Clostridium_acetobutylicum_ATCC_824 0
Halothermothrix_orenii_H_168 1
Halanaerobium_hydrogeniformans 1
Halanaerobium_praevalens_DSM_2228 0
Enterococcus_sp._7L76 0
Enterococcus_hirae_ATCC_9790 0
Enterococcus_faecalis_62 0
Leuconostoc_sp._C2 0
Leuconostoc_kimchii_IMSNU_11154 0
Leuconostoc_mesenteroides_subsp._mesenteroides_ATCC_8293 0
Lactobacillus_casei_ATCC_334 0
Lactobacillus_sakei_subsp._sakei_23K 0
Lactobacillus_plantarum_JDM1 1
Lactobacillus_buchneri_NRRL_B-30929 0
Lactobacillus_buchneri 0
Lactobacillus_brevis_ATCC_367 0
Pediococcus_claussenii_ATCC_BAA-344 0
Lactococcus_lactis_subsp._cremoris_MG1363 0
Streptococcus_sp._I-P16 1
Streptococcus_intermedius_JTH08 0
Streptococcus_equi_subsp._equi_4047 0
Streptococcus_dysgalactiae_subsp._equisimilis_GGS_124 0
Streptococcus_uberis_0140J 0
Streptococcus_pyogenes_str._Manfredo 0
Streptococcus_agalactiae_A909 0
Streptococcus_suis_P1/7 0
Paenibacillus_mucilaginosus_3016 2
Paenibacillus_polymyxa_M1 1
Listeria_welshimeri_serovar_6b_str._SLCC5334 1
Listeria_innocua_Clip11262 1
Listeria_seeligeri_serovar_1/2b_str._SLCC3954 5
Listeria_monocytogenes_serotype_4b_str._CLIP_80459 1
Listeria_ivanovii_subsp._ivanovii_PAM_55 0
Solibacillus_silvestris_StLB046 0
Lysinibacillus_sphaericus_C3-41 0
Bacillus_weihenstephanensis_KBAB4 0
Bacillus_thuringiensis_str._Al_Hakam 0
Bacillus_cereus_03BB102 0
Bacillus_anthracis_str._A0248 0
Bacillus_cellulosilyticus_DSM_2522 0
Candidatus_Cloacamonas_acidaminovorans 0
Pelodictyon_phaeoclathratiforme_BU-1 1
Chlorobium_luteolum_DSM_273 1
Chlorobium_chlorochromatii_CaD3 1
Chlorobium_phaeobacteroides_DSM_266 1
Chlorobium_phaeovibrioides_DSM_265 1
Chlorobium_limicola_DSM_245 1
Chlorobaculum_parvum_NCIB_8327 1
Chlorobium_tepidum_TLS 1
Chloroherpeton_thalassium_ATCC_35110 1
Prosthecochloris_aestuarii_DSM_271 1
Haliscomenobacter_hydrossis_DSM_1100 2
Saprospira_grandis_str._Lewin 10
Chitinophaga_pinensis_DSM_2588 2
Flexibacter_litoralis_DSM_6794 2
Candidatus_Amoebophilus_asiaticus_5a2 0
Belliella_baltica_DSM_15883 0
Cyclobacterium_marinum_DSM_745 0
Marivirga_tractuosa_DSM_4126 1
Fibrella_aestuarina 0
Leadbetterella_byssophila_DSM_17132 1
Dyadobacter_fermentans_DSM_18053 0
Cytophaga_hutchinsonii_ATCC_33406 1
Spirosoma_linguale_DSM_74 0
Runella_slithyformis_DSM_19594 0
Parabacteroides_distasonis_ATCC_8503 0
Tannerella_forsythia_ATCC_43037 0
Paludibacter_propionicigenes_WB4 0
Odoribacter_splanchnicus_DSM_20712 2
Bacteroides_sp._CF50 0
Prevotella_melaninogenica_ATCC_25845 0
Prevotella_intermedia_17 1
Prevotella_denticola_F0289 0
Prevotella_ruminicola_23 0
Porphyromonas_asaccharolytica_DSM_20707 3
Porphyromonas_gingivalis_ATCC_33277 0
Alistipes_finegoldii_DSM_17242 2
Bacteroides_salanitronis_DSM_18170 0
Bacteroides_helcogenes_P_36-108 2
Bacteroides_vulgatus_ATCC_8482 1
Bacteroides_thetaiotaomicron_VPI-5482 4
Bacteroides_fragilis_YCH46 1
Pedobacter_saltans_DSM_12145 1
Fluviicola_taffensis_DSM_16823 1
Owenweeksia_hongkongensis_DSM_17368 1
Zunongwangia_profunda_SM-A87 1
Maribacter_sp._HTCC2170 1
Robiginitalea_biformata_HTCC2501 1
Croceibacter_atlanticus_HTCC2559 1
Zobellia_galactanivorans 1
Muricauda_ruestringensis_DSM_13258 0
Cellulophaga_algicola_DSM_14237 1
Cellulophaga_lytica_DSM_7489 4
Flavobacteriaceae_bacterium_3519-10 1
Riemerella_anatipestifer_ATCC_11845_=_DSM_15868 0
Capnocytophaga_canimorsus_Cc5 2
Capnocytophaga_ochracea_DSM_7271 3
Flavobacterium_indicum_GPTSA100-9 0
Flavobacterium_psychrophilum_JIP02/86 0
Flavobacterium_branchiophilum_FL-15 0
Flavobacterium_columnare_ATCC_49512 1
Flavobacterium_johnsoniae_UW101 4
Candidatus_Protochlamydia_amoebophila_UWE25 1
Parachlamydia_acanthamoebae_UV-7 0
Simkania_negevensis_Z 2
Planctomyces_brasiliensis_DSM_5305 1
Planctomyces_limnophilus_DSM_3776 1
Rhodopirellula_baltica_SH_1 1
Pirellula_staleyi_DSM_6068 0
Coraliomargarita_akajimensis_DSM_45221 0
Turneriella_parva_DSM_21527 1
Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._L550 2
Leptospira_interrogans_serovar_Lai_str._IPAV 4
Brachyspira_murdochii_DSM_12563 3
Brachyspira_intermedia_PWS/A 7
Brachyspira_pilosicoli_95/1000 9
Brachyspira_hyodysenteriae_WA1 6
Spirochaeta_smaragdinae_DSM_11293 2
Sphaerochaeta_coccoides_DSM_17374 0
Spirochaeta_caldaria_DSM_7334 1
Treponema_azotonutricium_ZAS-9 1
Treponema_primitia_ZAS-2 4
Treponema_succinifaciens_DSM_2489 2
Treponema_denticola_ATCC_35405 4
Spirochaeta_africana_DSM_8902 1
Desulfurispirillum_indicum_S5 0
Granulicella_tundricola_MP5ACTX9 0
Fusobacterium_nucleatum_subsp._nucleatum_ATCC_25586 0
candidate_division_SR1_bacterium_RAAC1_SR1_1 0
Bacteriovorax_marinus_SJ 0
Arcobacter_sp._L 1
Arcobacter_nitrofigilis_DSM_7299 2
Helicobacter_hepaticus_ATCC_51449 0
Syntrophobacter_fumaroxidans_MPOB 2
Desulfatibacillum_alkenivorans_AK-01 0
Babela_massiliensis 0
Haliangium_ochraceum_DSM_14365 1
Sorangium_cellulosum_'So_ce_56' 2
Corallococcus_coralloides_DSM_2259 1
Myxococcus_xanthus_DK_1622 0
Myxococcus_fulvus_HW-1 1
Dechloromonas_aromatica_RCB 1
Ralstonia_solanacearum_CFBP2957 0
Polaromonas_naphthalenivorans_CJ2 1
Acidovorax_citrulli_AAC00-1 0
Acidovorax_avenae_subsp._avenae_ATCC_19860 0
Comamonas_testosteroni_CNB-2 1
Methylotenera_versatilis_301 0
Methylobacillus_flagellatus_KT 1
Pseudovibrio_sp._FO-BEG1 2
Magnetospirillum_magneticum_AMB-1 1
Rhodospirillum_rubrum_F11 0
Polymorphum_gilvum_SL003B-26A1 0
Sinorhizobium_fredii_NGR234 0
Rhizobium_etli_CIAT_652 1
Candidatus_Liberibacter_asiaticus_str._psy62 0
Bradyrhizobium_japonicum_USDA_110 0
Aeromonas_hydrophila_subsp._hydrophila_ATCC_7966 0
Vibrio_vulnificus_MO6-24/O 0
Photobacterium_profundum_SS9 0
Ferrimonas_balearica_DSM_9799 0
Shewanella_loihica_PV-4 1
Shewanella_halifaxensis_HAW-EB4 1
Shewanella_sediminis_HAW-EB3 0
Shewanella_pealeana_ATCC_700345 2
Shewanella_woodyi_ATCC_51908 1
Shewanella_putrefaciens_CN-32 1
Colwellia_psychrerythraea_34H 1
Pseudoalteromonas_sp._SM9913 0
Marinobacter_aquaeolei_VT8 1
Hahella_chejuensis_KCTC_2396 2
Methylomonas_methanica_MC09 0
Xanthomonas_axonopodis_pv._citri_str._306 0
Xanthomonas_oryzae_pv._oryzae_PXO99A 0
Xanthomonas_campestris_pv._campestris_str._B100 0
Thioalkalivibrio_sp._K90mix 0
Coxiella_burnetii_Dugway_5J108-111 1
Providencia_stuartii_MRSN_2154 1
Edwardsiella_ictaluri_93-146 0
Yersinia_pseudotuberculosis_IP_31758 3
Yersinia_pestis_Pestoides_F 1
Yersinia_enterocolitica_subsp._enterocolitica_8081 1
Erwinia_amylovora_ATCC_49946 0
Cronobacter_sakazakii_ES15 1
Candidatus_Hamiltonella_defensa_5AT_(Acyrthosiphon_pisum) 0
Shigella_sonnei_Ss046 0
Shigella_flexneri_5_str._8401 2
Shigella_dysenteriae_Sd197 0
Shigella_boydii_CDC_3083-94 0
Salmonella_bongori_NCTC_12419 0
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_C_strain_RKS4594 0
Escherichia_fergusonii_ATCC_35469 1
Pseudomonas_sp._TKP 1
Pseudomonas_sp._UW4 0
Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421 0
Pseudomonas_entomophila_L48 2
Pseudomonas_putida_F1 0
Pseudomonas_protegens_Pf-5 1
Pseudomonas_fluorescens_SBW25 0
Pseudomonas_sp._VLB120 0
Psychrobacter_cryohalolentis_K5 1
Methanosaeta_concilii_GP6 0
Methanosarcina_acetivorans_C2A 0
Methanosarcina_mazei_Go1 0
Methanosarcina_barkeri_str._Fusaro 0
Thermoplasmatales_archaeon_BRNA1 0
Methanobrevibacter_ruminantium_M1 0
Acholeplasma_laidlawii_PG-8A 0

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   33
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   1
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   15
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   4
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   3
Cryptococcus_neoformans_var._grubii_H99_ 2
Cryptococcus_neoformans_B-3501A_ 1
Cryptococcus_neoformans_JEC21_ 1
Paracoccidioides_brasiliensis_Pb01_ 1
Paracoccidioides_brasiliensis_Pb03_ 1
Coccidioides_posadasii_str._Silveira_ 1
Coccidioides_immitis_RMSCC_3703_ 1
Coccidioides_immitis_RMSCC_2394_ 1
Coccidioides_immitis_H538.4_ 2
Ajellomyces_dermatitidis_ER-3_ 1
Histoplasma_capsulatum_H143 2
Histoplasma_capsulatum_H88 1
Histoplasma_capsulatum_G186AR 1
Aspergillus_fumigatus_A1163_ 0
Candida_albicans_WO-1_ 4
Saccharomyces_cerevisiae_UC5 1
Saccharomyces_cerevisiae_PW5 1
Saccharomyces_cerevisiae_FL100 1
Saccharomyces_cerevisiae_CLIB324 1
Saccharomyces_cerevisiae_CBS7960 2
Saccharomyces_cerevisiae_YJM269 1
Saccharomyces_cerevisiae_T7 1
Saccharomyces_cerevisiae_FostersB 0
Saccharomyces_cerevisiae_FostersO 3
Saccharomyces_cerevisiae_VL3 2
Saccharomyces_cerevisiae_Vin13 1
Saccharomyces_cerevisiae_LalvinQA23 1
Saccharomyces_cerevisiae_AWRI796 1
Saccharomyces_cerevisiae_Sigma1278b 1
Saccharomyces_cerevisiae_W303 1
Saccharomyces_cerevisiae_JAY291 1
Saccharomyces_cerevisiae_AWRI1631 1
Saccharomyces_cerevisiae_YPS163 0
Saccharomyces_cerevisiae_CLIB215 1
Saccharomyces_cerevisiae_Y10 1
Saccharomyces_cerevisiae_YJM789_ 1
Saccharomyces_cerevisiae_YJM789 1
Saccharomyces_cerevisiae_RM11-1a 1
Saccharomyces_cerevisiae_RM11-1a_ 1
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   1
Schizosaccharomyces_pombe_972h-_ 0
Batrachochytrium_dendrobatidis_JEL423_ 4
Batrachochytrium_dendrobatidis_JAM81_ 2
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   40
Hordeum_vulgare_22   (Domesticated barley)   93
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   68
Trypanosoma_brucei_Lister_427_v4.1 3
Neospora_caninum_Nc-Liverpool_6.2 1
Plasmodium_falciparum_HB3_ 1
Chamaesiphon_minutus_PCC_6605 3
Crinalium_epipsammum_PCC_9333 6
Oscillatoria_nigro-viridis_PCC_7112 2
Oscillatoria_acuminata_PCC_6304 1
Cyanothece_sp._PCC_7822 1
Cyanothece_sp._PCC_7425 0
Cyanothece_sp._PCC_7424 1
Cyanothece_sp._PCC_8801 1
Stanieria_cyanosphaera_PCC_7437 0
Calothrix_parietina_Calothrix_sp._PCC_6303 1
Cylindrospermum_stagnale_PCC_7417 1
Anabaena_cylindrica_PCC_7122 1
Mycoplasma_fermentans_JER 0
Mycoplasma_fermentans_PG18 0
Mycoplasma_hyopneumoniae_7448 1
Mycoplasma_hyopneumoniae_J 1
Adlercreutzia_equolifaciens_DSM_19450 0
Nocardiopsis_alba_ATCC_BAA-2165 0
Streptomyces_rapamycinicus_NRRL_5491 1
Streptomyces_davawensis_JCM_4913 0
Streptomyces_fulvissimus_DSM_40593 0
Saccharothrix_espanaensis_DSM_44229 1
Amycolatopsis_mediterranei_RB 1
Amycolatopsis_mediterranei_S699 1
Amycolatopsis_mediterranei_S699 1
Propionibacterium_acidipropionici_ATCC_4875 0
Actinomyces_odontolyticus_ATCC_17982 0
Eubacterium_siraeum_V10Sc8a 0
[Clostridium]_stercorarium_Clostridiu_subsp._stercorarium_DSM_8532 0
Faecalibacterium_prausnitzii_L2-6 0
Ruminococcus_champanellensis_18P13 0
Desulfosporosinus_meridiei_DSM_13257 1
Desulfitobacterium_dichloroeliminans_LMG_P-21439 0
Desulfitobacterium_hafniense_DCB-2 1
Desulfotomaculum_gibsoniae_DSM_7213 0
Clostridium_difficile_BI1 0
Clostridium_difficile_R20291 0
Clostridium_difficile_CD196 0
Roseburia_intestinalis_XB6B4 2
Clostridium_sp._SY8519 0
Clostridium_saccharobutylicum_DSM_13864 1
Clostridium_saccharoperbutylacetonicum_N1-4(HMT) 2
Clostridium_kluyveri_NBRC_12016 1
Clostridium_tetani_genome_12124569 0
Clostridium_pasteurianum_BC1 0
Clostridium_botulinum_H04402_065 2
Clostridium_botulinum_BKT015925 0
Clostridium_botulinum_F_str._230613 0
Clostridium_botulinum_F_str._Langeland 2
Clostridium_botulinum_B1_str._Okra 2
Clostridium_botulinum_Ba4_str._657 2
Clostridium_botulinum_A2_str._Kyoto 2
Clostridium_botulinum_A3_str._Loch_Maree 2
Clostridium_botulinum_A_str._Hall 1
Clostridium_botulinum_A_str._ATCC_19397 2
Clostridium_acetobutylicum_DSM_1731 0
Clostridium_acetobutylicum_EA_2018 0
Halobacteroides_halobius_DSM_5150 1
Carnobacterium_maltaromaticum_LMA28 0
Enterococcus_mundtii_QU_25 0
Enterococcus_faecalis_str._Symbioflor_1 0
Enterococcus_faecalis_D32 0
Enterococcus_faecalis_OG1RF 0
Enterococcus_faecalis_V583 0
Leuconostoc_mesenteroides_subsp._mesenteroides_J18 0
Lactobacillus_amylovorus_GRL_1112 0
Lactobacillus_plantarum_16 0
Lactobacillus_plantarum_ZJ316 1
Lactobacillus_plantarum_subsp._plantarum_ST-III 0
Lactobacillus_plantarum_subsp._plantarum_P-8 1
Lactobacillus_plantarum_WCFS1 0
Lactobacillus_brevis_KB290 0
Lactococcus_lactis_subsp._lactis_KLDS_4.0325 0
Lactococcus_lactis_subsp._lactis_IO-1 0
Lactococcus_lactis_subsp._lactis_CV56 0
Lactococcus_lactis_subsp._lactis_Il1403 0
Lactococcus_lactis_subsp._cremoris_KW2 0
Lactococcus_lactis_subsp._cremoris_UC509.9 0
Lactococcus_lactis_subsp._cremoris_A76 0
Lactococcus_lactis_subsp._cremoris_NZ9000 0
Lactococcus_lactis_subsp._cremoris_SK11 0
Streptococcus_constellatus_subsp._pharyngis_C1050 0
Streptococcus_constellatus_subsp._pharyngis_C818 0
Streptococcus_constellatus_subsp._pharyngis_C232 0
Streptococcus_intermedius_B196 0
Streptococcus_intermedius_C270 0
Streptococcus_anginosus_C238 0
Streptococcus_equi_subsp._zooepidemicus_ATCC_35246 0
Streptococcus_equi_subsp._zooepidemicus_MGCS10565 0
Streptococcus_equi_subsp._zooepidemicus 0
Streptococcus_dysgalactiae_subsp._equisimilis_167 0
Streptococcus_dysgalactiae_subsp._equisimilis_AC-2713 0
Streptococcus_dysgalactiae_subsp._equisimilis_ATCC_12394 0
Streptococcus_dysgalactiae_subsp._equisimilis_RE378 0
Streptococcus_iniae_SF1 0
Streptococcus_pyogenes_HSC5 0
Streptococcus_pyogenes_A20 0
Streptococcus_pyogenes_MGAS1882 0
Streptococcus_pyogenes_MGAS15252 0
Streptococcus_pyogenes_Alab49 0
Streptococcus_pyogenes_MGAS10750 0
Streptococcus_pyogenes_MGAS10270 0
Streptococcus_pyogenes_MGAS2096 0
Streptococcus_pyogenes_MGAS9429 0
Streptococcus_pyogenes_MGAS6180 0
Streptococcus_pyogenes_NZ131 0
Streptococcus_pyogenes_MGAS8232 0
Streptococcus_pyogenes_MGAS10394 0
Streptococcus_pyogenes_MGAS315 0
Streptococcus_pyogenes_SSI-1 0
Streptococcus_pyogenes_M1_476 0
Streptococcus_pyogenes_MGAS5005 0
Streptococcus_pyogenes_M1_GAS 0
Streptococcus_pneumoniae_A026 0
Streptococcus_pneumoniae_ST556 0
Streptococcus_pneumoniae_SPNA45 0
Streptococcus_pneumoniae_INV104 0
Streptococcus_pneumoniae_INV200 0
Streptococcus_pneumoniae_ATCC_700669 0
Streptococcus_pneumoniae_TCH8431/19A 0
Streptococcus_pneumoniae_CGSP14 0
Streptococcus_pneumoniae_G54 0
Streptococcus_pneumoniae_JJA 0
Streptococcus_pneumoniae_70585 0
Streptococcus_pneumoniae_Hungary19A-6 0
Streptococcus_pneumoniae_Taiwan19F-14 0
Streptococcus_pneumoniae_670-6B 0
Streptococcus_pneumoniae_TIGR4 0
Streptococcus_agalactiae_ILRI112 0
Streptococcus_agalactiae_ILRI005 0
Streptococcus_agalactiae_09mas018883 0
Streptococcus_agalactiae_2-22 0
Streptococcus_agalactiae_GD201008-001 0
Streptococcus_agalactiae_NEM316 0
Streptococcus_agalactiae_2603V/R 0
Streptococcus_suis_T15 0
Streptococcus_suis_TL13 0
Streptococcus_suis_SC070731 0
Streptococcus_suis_S735 0
Streptococcus_suis_ST3 0
Streptococcus_suis_D9 0
Streptococcus_suis_SS12 0
Streptococcus_suis_D12 0
Streptococcus_suis_ST1 0
Streptococcus_suis_A7 0
Streptococcus_suis_JS14 0
Streptococcus_suis_BM407 0
Streptococcus_suis_SC84 0
Streptococcus_suis_GZ1 0
Streptococcus_suis_98HAH33 0
Streptococcus_suis_05ZYH33 0
Paenibacillus_sp._Y412MC10 2
Paenibacillus_mucilaginosus_KNP414 2
Paenibacillus_mucilaginosus_K02 2
Paenibacillus_polymyxa_CR1 1
Paenibacillus_polymyxa_SC2 1
Listeria_monocytogenes_EGD_sequence 0
Listeria_monocytogenes_N53-1 3
Listeria_monocytogenes_La111 3
Listeria_monocytogenes_serotype_4b_str._LL195 0
Listeria_monocytogenes_07PF0776 2
Listeria_monocytogenes_M7 2
Listeria_monocytogenes_J1-220 0
Listeria_monocytogenes_J1816 0
Listeria_monocytogenes_SLCC2376 0
Listeria_monocytogenes_SLCC5850 0
Listeria_monocytogenes_ATCC_19117 2
Listeria_monocytogenes_L312 1
Listeria_monocytogenes_SLCC2479 0
Listeria_monocytogenes_SLCC7179 0
Listeria_monocytogenes_SLCC2540 0
Listeria_monocytogenes_SLCC2378 0
Listeria_monocytogenes_serotype_1/2b_str._SLCC2755 0
Listeria_monocytogenes_serotype_1/2c_str._SLCC2372 1
Listeria_monocytogenes_serotype_7_str._SLCC2482 0
Listeria_monocytogenes_08-5578 0
Listeria_monocytogenes_08-5923 0
Listeria_monocytogenes_L99 1
Listeria_monocytogenes_HCC23 1
Listeria_monocytogenes_10403S 0
Listeria_monocytogenes_J0161 0
Listeria_monocytogenes_Finland_1998 0
Listeria_monocytogenes_FSL_R2-561 0
Listeria_monocytogenes_serotype_4b_str._F2365 0
Listeria_monocytogenes_EGD-e 0
Bacillus_thuringiensis_HD-771 0
Bacillus_thuringiensis_HD-789 0
Bacillus_thuringiensis_serovar_chinensis_CT-43 0
Bacillus_thuringiensis_YBT-1518 0
Bacillus_thuringiensis_Bt407 0
Bacillus_thuringiensis_serovar_konkukian_str._97-27 0
Bacillus_thuringiensis_serovar_kurstaki_str._HD73 0
Bacillus_thuringiensis_BMB171 0
Bacillus_thuringiensis_serovar_finitimus_YBT-020 0
Bacillus_thuringiensis_serovar_thuringiensis_str._IS5056 0
Bacillus_cereus_FRI-35 0
Bacillus_cereus_biovar_anthracis_str._CI 0
Bacillus_cereus_AH820 0
Bacillus_cereus_AH187 0
Bacillus_cereus_B4264 1
Bacillus_cereus_G9842 0
Bacillus_cereus_Q1 0
Bacillus_cereus_F837/76 0
Bacillus_cereus_NC7401 0
Bacillus_cereus_E33L 0
Bacillus_cereus_ATCC_14579 2
Bacillus_cereus_ATCC_10987 0
Bacillus_anthracis_str._H9401 0
Bacillus_anthracis_str._CDC_684 0
Bacillus_anthracis_str._'Ames_Ancestor' 0
Bacillus_anthracis_str._Sterne 0
Bacillus_anthracis_str._Ames 0
Chlorobium_phaeobacteroides_BS1 1
Echinicola_vietnamensis_DSM_17526 1
Emticicia_oligotrophica_DSM_17448 1
Prevotella_sp._oral_taxon_299_str._F0039 1
Prevotella_dentalis_DSM_3688 0
Porphyromonas_gingivalis_TDC60 0
Porphyromonas_gingivalis_W83 0
Alistipes_shahii_WAL_8301 3
Bacteroides_xylanisolvens_XB1A 4
Bacteroides_fragilis_638R 1
Bacteroides_fragilis_NCTC_9343 2
Nonlabens_dokdonensis_DSW-6 1
Psychroflexus_torquis_ATCC_700755 1
Riemerella_anatipestifer_RA-CH-2 0
Riemerella_anatipestifer_RA-CH-1 0
Riemerella_anatipestifer_RA-GD 0
Riemerella_anatipestifer_ATCC_11845_=_DSM_15868 0
Singulisphaera_acidiphila_DSM_18658 2
Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._JB197 1
Leptospira_interrogans_serovar_Lai_str._56601 4
Leptospira_interrogans_serovar_Copenhageni_str._Fiocruz_L1-130 3
Brachyspira_pilosicoli_WesB 5
Brachyspira_pilosicoli_B2904 4
Brachyspira_pilosicoli_P43/6/78 8
Treponema_pedis_str._T_A4 6
Bdellovibrio_bacteriovorus_str._Tiberius 1
Desulfovibrio_gigas_DSM_1382_=_ATCC_19364 0
Sorangium_cellulosum_So0157-2 1
Myxococcus_stipitatus_DSM_14675 1
Ralstonia_solanacearum_FQY_4 0
Ralstonia_solanacearum_Po82 0
Ralstonia_solanacearum_PSI07 0
Ralstonia_solanacearum_CMR15 0
Ralstonia_solanacearum_GMI1000 0
Leisingera_methylohalidivorans_DSM_14336 0
Rhodospirillum_rubrum_ATCC_11170 0
Sinorhizobium_fredii_USDA_257 0
Sinorhizobium_fredii_HH103 0
Bradyrhizobium_japonicum_USDA_6 0
Aeromonas_hydrophila_ML09-119 1
Vibrio_vulnificus_CMCP6 0
Vibrio_vulnificus_YJ016 0
Shewanella_putrefaciens_200 1
Alteromonas_macleodii_str._'Ionian_Sea_UM4b' 0
Alteromonas_macleodii_str._'Ionian_Sea_UM7' 0
Alteromonas_macleodii_AltDE1 0
Thalassolituus_oleivorans_MIL-1 1
Xanthomonas_citri_subsp._citri_Aw12879 0
Xanthomonas_campestris_pv._vesicatoria_str._85-10 0
Xanthomonas_axonopodis_pv._citrumelo_F1 0
Xanthomonas_axonopodis_Xac29-1 0
Xanthomonas_oryzae_pv._oryzicola_BLS256 0
Xanthomonas_oryzae_pv._oryzae_MAFF_311018 0
Xanthomonas_oryzae_pv._oryzae_KACC_10331 0
Xanthomonas_campestris_pv._raphani_756C 0
Xanthomonas_campestris_pv._campestris_str._8004 0
Xanthomonas_campestris_pv._campestris_str._ATCC_33913 0
Thioalkalivibrio_nitratireducens_DSM_14787 0
Thioflavicoccus_mobilis_8321 0
Coxiella_burnetii_CbuK_Q154 1
Yersinia_pseudotuberculosis_PB1/+ 1
Yersinia_pseudotuberculosis_YPIII 1
Yersinia_pseudotuberculosis_IP_32953 1
Yersinia_pestis_biovar_Microtus_str._91001 3
Yersinia_pestis_A1122 1
Yersinia_pestis_Z176003 2
Yersinia_pestis_D182038 2
Yersinia_pestis_D106004 1
Yersinia_pestis_biovar_Medievalis_str._Harbin_35 2
Yersinia_pestis_Nepal516 2
Yersinia_pestis_Antiqua 2
Yersinia_pestis_Angola 2
Yersinia_pestis_CO92 1
Yersinia_pestis_KIM10+ 2
Yersinia_enterocolitica_subsp._palearctica_105.5R(r) 1
Yersinia_enterocolitica_subsp._palearctica_Y11 1
Erwinia_amylovora_CFBP1430 0
Cronobacter_sakazakii_CMCC_45402 1
Shigella_sonnei_53G 0
Shigella_flexneri_2002017 1
Shigella_flexneri_2a_str._2457T 1
Shigella_flexneri_2a_str._301 1
Shigella_dysenteriae_1617 2
Shigella_boydii_Sb227 0
Salmonella_bongori_N268-08 0
Salmonella_enterica_subsp._arizonae_serovar_62:z4,z23:--_str._RSK2980 0
Salmonella_enterica_subsp._enterica_serovar_4,[5],12:i:-_str._08-1736 0
Salmonella_enterica_subsp._enterica_serovar_Javiana_str._CFSAN001992 0
Salmonella_enterica_subsp._enterica_serovar_Schwarzengrund_str._CVM19633 0
Salmonella_enterica_subsp._enterica_Serovar_Cubana_str._CFSAN002050 0
Salmonella_enterica_subsp._enterica_serovar_Enteritidis_str._P125109 0
Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67 0
Salmonella_enterica_subsp._enterica_serovar_Newport_str._USMARC-S3124.1 0
Salmonella_enterica_subsp._enterica_serovar_Newport_str._SL254 0
Salmonella_enterica_subsp._enterica_serovar_Dublin_str._CT_02021853 0
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_var._5-_str._CFSAN001921 0
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._U288 0
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._798 0
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._UK-1 0
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._ST4/74 0
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._T000240 0
Salmonella_enterica_The_genome_of__subsp._enterica_serovar_Typhimurium_str._DT2 0
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._D23580 0
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._SL1344 0
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._14028S 0
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._LT2 0
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_Definitive_Type_104 0
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._P-stx-12 0
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty21a 0
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18 0
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2 0
Salmonella_enterica_serovar_Bovismorbificans_genomics 0
Salmonella_enterica_subsp._enterica_serovar_Bareilly_str._CFSAN000189 0
Salmonella_enterica_subsp._enterica_serovar_Agona_str._24249 0
Salmonella_enterica_subsp._enterica_serovar_Agona_str._SL483 0
Salmonella_enterica_subsp._enterica_serovar_Weltevreden_str._2007-60-3289-1 0
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_B_str._SPB7 0
Salmonella_enterica_subsp._enterica_Serovar_Heidelberg_str._CFSAN002069 0
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._B182 0
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._41578 0
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._SL476 0
Salmonella_enterica_subsp._enterica_serovar_Thompson_str._RM6836 0
Escherichia_coli_E24377A 0
Escherichia_coli_LY180 0
Escherichia_coli_APEC_O78 1
Escherichia_coli_O7:K1_str._CE10 0
Escherichia_coli_042 0
Escherichia_coli_Xuzhou21 3
Escherichia_coli_KO11FL 0
Escherichia_coli_KO11FL 0
Escherichia_coli_IAI39 0
Escherichia_coli_UMN026 0
Escherichia_coli_W 0
Escherichia_coli_W 0
Escherichia_coli_DH1 1
Escherichia_coli_DH1 1
Escherichia_coli_SMS-3-5 1
Escherichia_coli_SE11 0
Escherichia_coli_HS 0
Escherichia_coli_O55:H7_str._RM12579 3
Escherichia_coli_O55:H7_str._CB9615 3
Escherichia_coli_O157:H7_str._TW14359 2
Escherichia_coli_O157:H7_str._EC4115 2
Escherichia_coli_O157:H7_str._Sakai 1
Escherichia_coli_O157:H7_str._EDL933 3
Pseudomonas_monteilii_SB3101 1
Pseudomonas_monteilii_SB3078 1
Pseudomonas_putida_H8234 0
Pseudomonas_putida_HB3267 1
Pseudomonas_putida_NBRC_14164 1
Pseudomonas_putida_DOT-T1E 0
Pseudomonas_putida_S16 1
Pseudomonas_putida_BIRD-1 0
Pseudomonas_putida_W619 1
Pseudomonas_putida_ND6 1
Pseudomonas_putida_KT2440 0
Pseudomonas_putida_GB-1 1
Pseudomonas_protegens_CHA0 1
Pseudomonas_poae_RE*1-1-14 0
Pseudomonas_fluorescens_F113 0
Pseudomonas_fluorescens_A506 0
Pseudomonas_fluorescens_R124 0
Pseudomonas_fluorescens_Pf0-1 0
Pseudomonas_aeruginosa_MTB-1 0
Methanolobus_psychrophilus_R15 0
Methanosarcina_mazei_Tuc01 0
Candidatus_Methanomassiliicoccus_intestinalis_Issoire-Mx1 0

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   18
Pan_troglodytes_69_2.1.4   (Chimpanzee)   19
Gorilla_gorilla_69_3.1   (Western gorilla)   20
Pongo_abelii_69_2   (Sumatran orangutan)   18
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   18
Macaca_mulatta_69_1   (Rhesus monkey)   17
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   20
Otolemur_garnettii_69_3   (Small-eared galago)   18
Microcebus_murinus_69_1   (Gray mouse lemur)   18
Rattus_norvegicus_69_3.4   (Norway rat)   16
Mus_musculus_69_38   (House mouse)   16
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   15
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   17
Cavia_porcellus_69_3   (Domestic guinea pig)   21
Oryctolagus_cuniculus_69_2   (Rabbit)   21
Ochotona_princeps_69   (American pika)   14
Tupaia_belangeri_69   (Northern tree shrew)   16
Sus_scrofa_69_10.2   (Pig)   16
Bos_taurus_69_3.1   (Cattle)   18
Vicugna_pacos_69_1   (Alpaca)   12
Tursiops_truncatus_69_1   (Bottlenose dolphin)   20
Mustela_putorius_furo_69_1.0   (Domestic ferret)   17
Ailuropoda_melanoleuca_69_1   (Giant panda)   18
Canis_familiaris_69_3.1   (Dog)   22
Felis_catus_69   (Domestic cat)   19
Equus_caballus_69_2   (Horse)   18
Myotis_lucifugus_69_2.0   (Little brown bat)   15
Pteropus_vampyrus_69_1   (Large flying fox)   20
Sorex_araneus_69_1   (European shrew)   8
Erinaceus_europaeus_69   (Western European hedgehog)   11
Procavia_capensis_69_1   (Cape rock hyrax)   12
Loxodonta_africana_69_3   (African savanna elephant)   15
Echinops_telfairi_69   (Small Madagascar hedgehog)   9
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   15
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   12
Macropus_eugenii_69_1.0   (Tammar wallaby)   13
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   16
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   14
Ornithorhynchus_anatinus_69_5   (Platypus)   19
Petromyzon_marinus_69_7.0   (Sea lamprey)   9
Meleagris_gallopavo_69_2   (Turkey)   11
Gallus_gallus_69_2   (Chicken)   12
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   11
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   17
Anolis_carolinensis_69_2.0   (Green anole)   21
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   14
Latimeria_chalumnae_69_1   (Coelacanth)   19
Gadus_morhua_69_1   (Atlantic cod)   16
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   15
Takifugu_rubripes_69_4   (Torafugu)   13
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   16
Oryzias_latipes_69_1   (Japanese medaka)   18
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   22
Oreochromis_niloticus_69_1.0   (Nile tilapia)   21
Danio_rerio_69_9   (Zebrafish)   23
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   5
Ciona_intestinalis_69   (Vase tunicate)   6
Drosophila_melanogaster_69_5   (Fruit fly)   1
Caenorhabditis_elegans_69_215   (Roundworm)   2
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   1
Arabidopsis_thaliana_10   (Thale cress)   22

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   56
Homo_sapiens__(NCBI_version)   (Human)   23
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   16
Heliconius_numata__(Incomplete) 0
Loa_loa_v3.3_(Request)   (Eye worm)   6
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   5
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   2
Encephalitozoon_intestinalis__(endoparasite) 1
Encephalitozoon_cuniculi_(endoparasite) 1
Picea_sitchensis__(Incomplete)   (Sitka spruce)   5
Lotus_japonicus__(Early_assembly) 75
Malus_x_domestica_(Duplicate)   (Apple)   161
Ricinus_communis__(Early_assembly)   (Castor bean)   30
Nicotiana_benthamiana_0.4.4_(Early_draft) 69
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   35
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   36
Phoenix_dactylifera__(Early_draft)   (Date palm)   20
Acholeplasma_laidlawii_PG-8A_(duplicate) 0
NCBI_plasmid_sequences_(Plasmids) 10
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 71
TargetDB__(Targets) 62
NCBI_viral_sequences_(Viral) 44
UniProt__viral_sequences_(Viral) 4
Protozoadb_2010_08_(Protozoadb) 457
STRING_v9.0.5_(STRING) 1498
Uniprot_2018_03_genome 65082
PDB_chains_(SCOP_1.75)_(PDB) 2
NCBI_2017_08_genome 25442
Protein_Data_Bank_(all_PDB_sequenc) 53

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

Please send feedback, comments or questions to superfamily@cs.bris.ac.uk or use the feedback form.

© Copyright 2013 The SUPERFAMILY authors and Julian Gough.