SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

  Home > SCOP hierarchy > Domain combination - _gap_,52058,_gap_,52058,_gap_

Domain combinations for _gap_,52058,_gap_,52058,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

52058 - L domain-like
52058 - L domain-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

Jump to [ Top of page · Domain combinations in individual genomes ]

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   1
Pan_troglodytes_76_2.1.4   (Chimpanzee)   1
Gorilla_gorilla_76_3.1   (Western gorilla)   2
Pongo_abelii_76_2   (Sumatran orangutan)   1
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   0
Papio_anubis_76   (Olive baboon)   1
Macaca_mulatta_76_1   (Rhesus monkey)   0
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   1
Otolemur_garnettii_76_3   (Small-eared galago)   2
Microcebus_murinus_76_1   (Gray mouse lemur)   1
Rattus_norvegicus_76_5.0   (Norway rat)   1
Mus_musculus_76_38   (House mouse)   1
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   0
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   1
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   0
Oryctolagus_cuniculus_76_2   (Rabbit)   0
Ochotona_princeps_76   (American pika)   0
Sus_scrofa_76_10.2   (Pig)   1
Bos_taurus_76_3.1   (Cattle)   1
Ovis_aries_76_3.1   (Sheep)   0
Vicugna_pacos_76_1   (Alpaca)   1
Tursiops_truncatus_76_1   (Bottlenose dolphin)   1
Mustela_putorius_furo_76_1.0   (Domestic ferret)   1
Ailuropoda_melanoleuca_76_1   (Giant panda)   0
Canis_familiaris_76_3.1   (Dog)   1
Felis_catus_76_6.2   (Domestic cat)   1
Equus_caballus_76_2   (Horse)   0
Myotis_lucifugus_76_2.0   (Little brown bat)   0
Pteropus_vampyrus_76_1   (Large flying fox)   1
Sorex_araneus_76_1   (European shrew)   1
Erinaceus_europaeus_76   (Western European hedgehog)   0
Loxodonta_africana_76_3   (African savanna elephant)   1
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   1
Macropus_eugenii_76_1.0   (Tammar wallaby)   1
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   2
Ornithorhynchus_anatinus_76_5   (Platypus)   1
Saccoglossus_kowalevskii_v3.0 0
Petromyzon_marinus_76_7.0   (Sea lamprey)   0
Meleagris_gallopavo_76_2   (Turkey)   2
Gallus_gallus_76_4   (Chicken)   1
Ficedula_albicollis_76_1.0   (Collared flycatcher)   1
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   1
Anolis_carolinensis_76_2.0   (Green anole)   0
Xenopus_laevis_   (African clawed frog)   0
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   1
Latimeria_chalumnae_76_1   (Coelacanth)   1
Lepisosteus_oculatus_76   (Spotted gar)   0
Gadus_morhua_76_1   (Atlantic cod)   0
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   1
Takifugu_rubripes_76_4   (Torafugu)   2
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   1
Oryzias_latipes_76_1   (Japanese medaka)   1
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   1
Poecilia_formosa_76   (Amazon molly)   1
Oreochromis_niloticus_76_1.0   (Nile tilapia)   1
Astyanax_mexicanus_76   (Mexican tetra)   1
Danio_rerio_76_9   (Zebrafish)   3
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   1
Adineta_vaga 0
Capitella_sp._I_ 1
Heliconius_melpomene_   (Postman butterfly)   1
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   0
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   1
Lucilia_cuprina   (Australian sheep blowfly)   0
Drosophila_grimshawi_1.3 0
Drosophila_willistoni_1.3 0
Drosophila_pseudoobscura_2.13 0
Drosophila_suzukii 0
Drosophila_simulans_1.3 0
Drosophila_sechellia_1.3 0
Drosophila_melanogaster_76_5   (Fruit fly)   0
Drosophila_erecta_1.3 0
Drosophila_ananassae_1.3 0
Drosophila_virilis_1.2 0
Drosophila_mojavensis_1.3 0
Anopheles_gambiae_49_3j   (African malaria mosquito)   0
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   0
Strigamia_maritima_22 0
Caenorhabditis_japonica_ 0
Caenorhabditis_brenneri_ 1
Proterospongia_sp._ATCC_50818_ 1
Coniophora_puteana 0
Sebacina_vermifera_MAFF_305830_v1.0 3
Magnaporthe_grisea_70-15_ 0
Chaetomium_globosum_CBS_148.51_ 0
Neurospora_discreta_FGSC_8579_ 0
Fusarium_graminearum_ 0
Blumeria_graminis_22 0
Pichia_membranifaciensv1.0 0
Spizellomyces_punctatus_DAOM_BR117_ 1
Dictyostelium_purpureum_ 1
Entamoeba_dispar_1.2 1
Entamoeba_invadens_1.2 2
Selaginella_moellendorffii_ 0
Pinus_taeda   (Loblolly pine)   2
Picea_abies   (Norway spruce)   2
Eucalyptus_grandis_v201   (Rose gum)   14
Theobroma_cacao_B97-61/B2_v1   (Cacao)   5
Gossypium_raimondii_v221 5
Citrus_clementina_v165 0
Citrus_sinensis_v154   (Sweet orange)   3
Thellungiella_halophila_v173 5
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   2
Capsella_rubella_v183 2
Arabidopsis_lyrata_   (Lyrate rockcress)   0
Arabidopsis_thaliana_10   (Thale cress)   2
Carica_papaya_   (Papaya)   0
Medicago_truncatula_   (Barrel medic)   6
Phaseolus_vulgaris_v186   (French bean)   5
Glycine_max_v109   (Soybean)   7
Cucumis_sativus_v122   (Cucumber)   0
Fragaria_vesca_   (Wild strawberry)   1
Malus_domestica_v196   (Apple)   10
Prunus_persica_v139   (Peach)   5
Linum_usitatissimum_v200   (Flax)   2
Manihot_esculenta_v147   (Cassava)   1
Populus_trichocarpa_v156   (Black cottonwood)   5
Vitis_vinifera_   (Wine grape)   0
Solanum_lycopersicum_v.2.3   (Tomato)   1
Solanum_tuberosum_   (Potato)   6
Actinidia_chinensis_Hongyang_ 1
Aquilegia_coerulea_v195 1
Triticum_urartu_22 4
Triticum_aestivum_22   (Bread wheat)   8
Aegilops_tauschii_22 7
Brachypodium_distachyon_   (Stiff brome)   1
Oryza_barthii_22   (African wild rice)   3
Oryza_meridionalis_22 4
Oryza_glumaepatula_22 3
Oryza_glaberrima   (African rice)   1
Oryza_punctata_22 5
Oryza_nivara_22 5
Oryza_brachyantha_22   (Malo sina)   0
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   4
Oryza_sativa_v193   (Rice)   4
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   2
Panicum_virgatum_v202   (Switchgrass)   6
Setaria_italica_v164   (Foxtail millet)   4
Zea_mays_subsp._mays_   (Maize)   1
Zea_mays_v181   (Maize)   1
Sorghum_bicolor_   (Sorghum)   3
Musa_balbisiana   (Balbis banana)   1
Amborella_trichopoda_22 0
Physcomitrella_patens 0
Coccomyxa_subellipsoidea_sp._C-169_v2 0
Chlorella_vulgaris_ 2
Ostreococcus_tauri_ 1
Bathycoccus_prasinos_ 0
Bigelowiella_natans_CCMP2755_22 2
Giardia_lamblia_2.3 1
Leishmania_mexicana_2.4 1
Trypanosoma_vivax_ 1
Albugo_laibachii_22 1
Pythium_iwayamai_DAOM_BR242034_22 0
Pythium_ultimum_v1.7-2 1
Pythium_vexans_DAOM_BR484_22 0
Phytophthora_ramorum_1.1   (Sudden oak death agent)   1
Phytophthora_sojae_1.1 0
Phytophthora_infestans_T30-4_ 1
Hyaloperonospora_arabidopsidis_22 1
Paramecium_tetraurelia_ 1
Symbiodinium_minutum_clade_B1_v1.2 1
Trichomonas_vaginalis_ 15
Mycoplasma_hominis_ATCC_23114 0
Slackia_heliotrinireducens_DSM_20476 0
Finegoldia_magna_ATCC_29328 1
Ruminococcus_sp. 1
Ruminococcus_albus_7 0
Syntrophomonas_wolfei_subsp._wolfei_str._Goettingen 0
Candidatus_Cloacamonas_acidaminovorans 0
Tannerella_forsythia_ATCC_43037 1
Prevotella_melaninogenica_ATCC_25845 1
Prevotella_intermedia_17 1
Prevotella_denticola_F0289 0
Prevotella_ruminicola_23 0
Porphyromonas_asaccharolytica_DSM_20707 6
Flavobacterium_johnsoniae_UW101 0
Thioalkalivibrio_sp._K90mix 0

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   1
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   0
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   3
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   1
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   4
Hordeum_vulgare_22   (Domesticated barley)   4
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   1
Clostridium_sp._SY8519 0
Clostridium_saccharoperbutylacetonicum_N1-4(HMT) 0
Clostridium_botulinum_F_str._230613 1
Clostridium_botulinum_F_str._Langeland 1
Listeria_monocytogenes_L99 0
Pseudomonas_fluorescens_A506 1
Pseudomonas_fluorescens_R124 1
Methanolobus_psychrophilus_R15 1

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   1
Pan_troglodytes_69_2.1.4   (Chimpanzee)   1
Gorilla_gorilla_69_3.1   (Western gorilla)   1
Pongo_abelii_69_2   (Sumatran orangutan)   1
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   0
Macaca_mulatta_69_1   (Rhesus monkey)   0
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   0
Otolemur_garnettii_69_3   (Small-eared galago)   2
Microcebus_murinus_69_1   (Gray mouse lemur)   1
Mus_musculus_69_38   (House mouse)   1
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   0
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   1
Ochotona_princeps_69   (American pika)   0
Sus_scrofa_69_10.2   (Pig)   1
Bos_taurus_69_3.1   (Cattle)   1
Vicugna_pacos_69_1   (Alpaca)   1
Tursiops_truncatus_69_1   (Bottlenose dolphin)   1
Mustela_putorius_furo_69_1.0   (Domestic ferret)   1
Ailuropoda_melanoleuca_69_1   (Giant panda)   0
Canis_familiaris_69_3.1   (Dog)   1
Felis_catus_69   (Domestic cat)   0
Equus_caballus_69_2   (Horse)   0
Myotis_lucifugus_69_2.0   (Little brown bat)   0
Pteropus_vampyrus_69_1   (Large flying fox)   1
Sorex_araneus_69_1   (European shrew)   1
Erinaceus_europaeus_69   (Western European hedgehog)   0
Loxodonta_africana_69_3   (African savanna elephant)   1
Macropus_eugenii_69_1.0   (Tammar wallaby)   1
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   2
Ornithorhynchus_anatinus_69_5   (Platypus)   1
Petromyzon_marinus_69_7.0   (Sea lamprey)   0
Meleagris_gallopavo_69_2   (Turkey)   2
Gallus_gallus_69_2   (Chicken)   0
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   1
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   1
Latimeria_chalumnae_69_1   (Coelacanth)   1
Gadus_morhua_69_1   (Atlantic cod)   0
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   1
Takifugu_rubripes_69_4   (Torafugu)   2
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   1
Oryzias_latipes_69_1   (Japanese medaka)   1
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   1
Oreochromis_niloticus_69_1.0   (Nile tilapia)   1
Danio_rerio_69_9   (Zebrafish)   3
Drosophila_melanogaster_69_5   (Fruit fly)   0
Arabidopsis_thaliana_10   (Thale cress)   2

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   1
Homo_sapiens__(NCBI_version)   (Human)   1
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   1
Lotus_japonicus__(Early_assembly) 0
Malus_x_domestica_(Duplicate)   (Apple)   10
Ricinus_communis__(Early_assembly)   (Castor bean)   1
Nicotiana_benthamiana_0.4.4_(Early_draft) 4
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   1
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   1
NCBI_plasmid_sequences_(Plasmids) 0
Uniprot_2018_03_genome 8793
NCBI_2017_08_genome 1147
Protein_Data_Bank_(all_PDB_sequenc) 2
TargetDB__(Targets) 0
Protozoadb_2010_08_(Protozoadb) 32
STRING_v9.0.5_(STRING) 61

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

Please send feedback, comments or questions to superfamily@cs.bris.ac.uk or use the feedback form.

© Copyright 2013 The SUPERFAMILY authors and Julian Gough.